Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.88466 * 2 1 4 4 C 1.55156 * 111.00736 * 123.92188 * 2 1 3 5 5 C 1.54334 * 103.01796 * 153.37997 * 4 2 1 6 6 H 1.09000 * 109.98953 * 218.66574 * 5 4 2 7 7 C 1.53007 * 109.77589 * 97.50043 * 5 4 2 8 8 N 1.47013 * 107.26943 * 338.14608 * 5 4 2 9 9 C 1.34781 * 125.65023 * 178.84790 * 8 5 4 10 10 O 1.21350 * 119.99803 * 359.71887 * 9 8 5 11 11 C 1.49450 * 120.00233 * 179.71205 * 9 8 5 12 12 O 1.21351 * 119.99839 * 354.35675 * 11 9 8 13 13 N 1.34774 * 119.99904 * 174.35472 * 11 9 8 14 14 C 1.46503 * 119.99938 * 184.55060 * 13 11 9 15 15 C 1.52996 * 109.47460 * 175.27118 * 14 13 11 16 16 C 1.50698 * 115.55220 * 282.46331 * 15 14 13 17 17 H 1.07995 * 120.00633 * 143.69653 * 16 15 14 18 18 C 1.37877 * 119.99738 * 323.69507 * 16 15 14 19 19 N 1.31518 * 119.99835 * 338.22527 * 18 16 15 20 20 Si 1.86794 * 120.00289 * 158.23216 * 18 16 15 21 21 H 1.48504 * 109.47493 * 59.99332 * 20 18 16 22 22 H 1.48501 * 109.47656 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46864 * 299.99602 * 20 18 16 24 24 C 1.52997 * 117.50005 * 136.74854 * 15 14 13 25 25 C 1.53001 * 60.00106 * 252.51348 * 24 15 14 26 26 C 1.47428 * 108.70441 * 358.58276 * 8 5 4 27 27 H 1.08999 * 109.47377 * 182.42808 * 1 2 3 28 28 H 1.09005 * 109.47416 * 302.42557 * 1 2 3 29 29 H 1.09004 * 109.47500 * 62.42812 * 1 2 3 30 30 H 1.08995 * 110.72104 * 271.93847 * 4 2 1 31 31 H 1.09005 * 110.71399 * 35.03723 * 4 2 1 32 32 H 1.09001 * 109.46861 * 300.80383 * 7 5 4 33 33 H 1.09002 * 109.46886 * 60.80739 * 7 5 4 34 34 H 1.09000 * 109.47048 * 180.80458 * 7 5 4 35 35 H 0.96996 * 120.00200 * 4.54646 * 13 11 9 36 36 H 1.09002 * 109.46836 * 295.27724 * 14 13 11 37 37 H 1.09000 * 109.47259 * 55.27243 * 14 13 11 38 38 H 0.97000 * 119.99800 * 185.02299 * 19 18 16 39 39 H 1.09000 * 117.49757 * 0.02562 * 24 15 14 40 40 H 1.08995 * 117.50096 * 145.02472 * 24 15 14 41 41 H 1.08998 * 117.49690 * 252.50964 * 25 24 15 42 42 H 1.09008 * 117.51663 * 107.48215 * 25 24 15 43 43 H 1.08996 * 110.37027 * 143.19724 * 26 8 5 44 44 H 1.08996 * 110.36380 * 265.41087 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0862 -0.8083 1.2019 5 6 3.4657 -1.2796 0.6953 6 1 3.6601 -2.2967 1.0356 7 6 4.5559 -0.3379 1.2110 8 7 3.4271 -1.2426 -0.7738 9 6 4.4476 -1.5608 -1.5947 10 8 5.5134 -1.9095 -1.1308 11 6 4.2668 -1.4842 -3.0763 12 8 3.1742 -1.2355 -3.5420 13 7 5.3171 -1.6913 -3.8950 14 6 5.1635 -1.5185 -5.3416 15 6 6.5213 -1.6970 -6.0237 16 6 7.4591 -0.5217 -5.9222 17 1 8.5210 -0.6860 -5.8132 18 6 6.9615 0.7633 -5.9686 19 7 5.7872 0.9944 -6.5137 20 14 7.9553 2.1759 -5.2573 21 1 9.2581 2.2700 -5.9639 22 1 7.2055 3.4458 -5.4315 23 1 8.1928 1.9352 -3.8112 24 6 6.5627 -2.5254 -7.3093 25 6 7.1391 -3.0967 -6.0122 26 6 2.0852 -0.8061 -1.2007 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3634 0.5511 0.8675 29 1 -0.3634 0.4757 -0.9110 30 1 2.1922 -0.1707 2.0795 31 1 1.4451 -1.6619 1.4223 32 1 4.3567 0.6748 0.8607 33 1 4.5615 -0.3510 2.3010 34 1 5.5261 -0.6669 0.8388 35 1 6.1748 -1.9548 -3.5264 36 1 4.4642 -2.2621 -5.7241 37 1 4.7810 -0.5192 -5.5496 38 1 5.4691 1.9054 -6.6123 39 1 5.6224 -2.9430 -7.6694 40 1 7.2682 -2.2204 -8.0821 41 1 8.2238 -3.1674 -5.9318 42 1 6.5782 -3.8904 -5.5185 43 1 2.1558 -0.1711 -2.0838 44 1 1.4525 -1.6698 -1.4050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326143892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -63.871003 kcal Electronic energy + Delta-G solvation = -24551.273287 eV Core-core repulsion = 21082.610283 eV Total energy + Delta-G solvation = -3468.663005 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91354 -40.17108 -38.83232 -38.50845 -35.06685 -34.27802 -33.89007 -32.79781 -28.69059 -27.92893 -27.50098 -26.78408 -25.14023 -23.06179 -22.32899 -21.38755 -21.19326 -20.43082 -19.07350 -17.97376 -17.89953 -17.34233 -16.76312 -16.68602 -16.29724 -15.91603 -15.28708 -15.23798 -14.74978 -14.71811 -14.41582 -14.26526 -13.80952 -13.70966 -13.51431 -13.47307 -13.22335 -12.96375 -12.85379 -12.77652 -12.57432 -12.46993 -12.36003 -12.09742 -11.76130 -11.58671 -11.46128 -11.39365 -11.24042 -10.66884 -10.52956 -10.20204 -9.95871 -9.80306 -8.19349 -6.19960 0.37393 1.28366 1.35944 1.41531 1.46982 2.15448 2.35986 2.52078 2.92609 3.33949 3.49097 3.62822 3.66812 3.90645 4.08652 4.17434 4.29109 4.37143 4.46539 4.48945 4.63338 4.64056 4.71746 4.79295 4.82155 4.86861 4.91360 4.93323 5.01949 5.03643 5.11085 5.22090 5.22568 5.26988 5.37000 5.44117 5.47210 5.50488 5.57157 5.87937 6.06607 6.30101 6.34997 6.69614 6.78765 7.01914 7.38113 8.82693 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.004488 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.484947 B = 6236.695146 C = 6595.487481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.081 0.919 4 C -0.110 4.110 5 C 0.122 3.878 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.586 5.586 9 C 0.520 3.480 10 O -0.543 6.543 11 C 0.492 3.508 12 O -0.548 6.548 13 N -0.671 5.671 14 C 0.155 3.845 15 C 0.007 3.993 16 C -0.514 4.514 17 H 0.058 0.942 18 C 0.038 3.962 19 N -0.891 5.891 20 Si 0.936 3.064 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.277 1.277 24 C -0.189 4.189 25 C -0.183 4.183 26 C 0.098 3.902 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.410 0.590 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 -2.766 16.117 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.147 4.147 5 C 0.020 3.980 6 H 0.099 0.901 7 C -0.219 4.219 8 N -0.320 5.320 9 C 0.303 3.697 10 O -0.422 6.422 11 C 0.273 3.727 12 O -0.428 6.428 13 N -0.320 5.320 14 C 0.033 3.967 15 C 0.006 3.994 16 C -0.551 4.551 17 H 0.077 0.923 18 C -0.164 4.164 19 N -0.527 5.527 20 Si 0.762 3.238 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.203 1.203 24 C -0.227 4.227 25 C -0.220 4.220 26 C -0.024 4.024 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.193 -2.629 15.967 19.124 hybrid contribution 1.179 0.648 -0.283 1.374 sum -9.014 -1.981 15.684 18.198 Atomic orbital electron populations 1.21663 0.91774 1.02980 1.02824 1.22413 0.97662 0.98870 0.93129 0.90049 1.22830 0.92548 1.01135 0.98223 1.22005 0.98254 1.00508 0.77204 0.90115 1.22138 0.98173 0.98862 1.02696 1.48490 1.12446 1.63392 1.07649 1.19808 0.83814 0.78964 0.87134 1.90701 1.26293 1.47807 1.77364 1.20272 0.85144 0.79297 0.87996 1.90655 1.25324 1.49116 1.77687 1.45854 1.13012 1.65023 1.08110 1.21080 0.96593 1.02532 0.76531 1.19145 0.93293 0.90024 0.96916 1.20658 0.92931 0.90004 1.51460 0.92346 1.25523 0.95871 1.00768 0.94285 1.69963 1.21007 1.21158 1.40614 0.85940 0.79423 0.78926 0.79478 1.19213 1.21025 1.20266 1.22935 1.01338 1.06444 0.92001 1.22904 0.99802 0.97396 1.01919 1.22812 0.81307 0.99381 0.98899 0.91571 0.90274 0.92661 0.87283 0.88568 0.92838 0.88478 0.94009 0.75437 0.94163 0.89187 0.92612 0.90293 0.90607 0.89684 0.89356 0.91051 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.29 71.98 0.67 -1.03 16 2 C -0.10 -1.73 3.64 -9.40 -0.03 -1.76 16 3 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 4 C -0.11 -1.50 5.95 31.79 0.19 -1.31 16 5 C 0.12 2.65 3.51 45.35 0.16 2.81 16 6 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.16 -3.54 9.05 71.98 0.65 -2.89 16 8 N -0.59 -17.33 3.08 -789.60 -2.43 -19.76 16 9 C 0.52 19.42 7.70 87.27 0.67 20.09 16 10 O -0.54 -21.86 15.38 -3.25 -0.05 -21.91 16 11 C 0.49 20.69 7.83 87.27 0.68 21.38 16 12 O -0.55 -24.33 13.87 -3.25 -0.05 -24.38 16 13 N -0.67 -29.36 5.54 -464.41 -2.57 -31.93 16 14 C 0.16 7.42 5.30 86.38 0.46 7.88 16 15 C 0.01 0.34 1.71 -52.93 -0.09 0.25 16 16 C -0.51 -27.22 8.97 25.60 0.23 -26.99 16 17 H 0.06 3.09 7.91 -2.91 -0.02 3.06 16 18 C 0.04 2.02 5.05 84.65 0.43 2.44 16 19 N -0.89 -49.76 11.15 21.45 0.24 -49.52 16 20 Si 0.94 42.99 29.59 68.60 2.03 45.02 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 C -0.19 -8.21 9.88 30.59 0.30 -7.90 16 25 C -0.18 -7.39 9.94 30.59 0.30 -7.09 16 26 C 0.10 2.52 5.44 86.85 0.47 2.99 16 27 H 0.07 0.75 8.11 -2.39 -0.02 0.73 16 28 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.11 1.02 7.83 -2.39 -0.02 1.00 16 31 H 0.10 1.02 8.01 -2.38 -0.02 1.00 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.19 6.74 -2.39 -0.02 1.18 16 35 H 0.41 17.47 7.96 -92.71 -0.74 16.74 16 36 H 0.04 1.86 7.98 -2.39 -0.02 1.85 16 37 H 0.09 4.96 5.49 -2.39 -0.01 4.95 16 38 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 39 H 0.08 3.20 8.10 -2.39 -0.02 3.19 16 40 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.08 3.32 8.14 -2.39 -0.02 3.31 16 42 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 43 H 0.07 2.27 6.32 -2.39 -0.02 2.26 16 44 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 Total: -1.00 -63.11 357.30 2.52 -60.59 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.25 Total: 33.02 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.09 Total: 8.87 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.76 Total: -101.20 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.10 Total: -46.29 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.11 2.52 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.286 kcal (2) G-P(sol) polarization free energy of solvation -63.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds