Wall clock time and date at job start Tue Mar 31 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.32099 * 2 1 4 4 C 1.54911 * 110.45981 * 237.70343 * 2 1 3 5 5 C 1.55162 * 101.57697 * 204.10515 * 4 2 1 6 6 H 1.08999 * 110.71723 * 276.95901 * 5 4 2 7 7 C 1.52998 * 110.71586 * 153.86836 * 5 4 2 8 8 C 1.54331 * 103.02295 * 35.30780 * 5 4 2 9 9 N 1.47023 * 107.26464 * 338.14060 * 8 5 4 10 10 C 1.34774 * 125.64760 * 178.85013 * 9 8 5 11 11 O 1.21355 * 120.00193 * 179.69412 * 10 9 8 12 12 C 1.49447 * 120.00011 * 359.68846 * 10 9 8 13 13 O 1.21352 * 120.00169 * 4.95286 * 12 10 9 14 14 N 1.34777 * 119.99950 * 184.94576 * 12 10 9 15 15 C 1.46510 * 119.99833 * 174.98324 * 14 12 10 16 16 C 1.52998 * 109.46720 * 185.10520 * 15 14 12 17 17 C 1.50702 * 115.55957 * 270.39564 * 16 15 14 18 18 H 1.08004 * 119.99493 * 142.64560 * 17 16 15 19 19 C 1.37874 * 120.00191 * 322.64057 * 17 16 15 20 20 N 1.31508 * 120.00090 * 343.36192 * 19 17 16 21 21 Si 1.86808 * 119.99807 * 163.36397 * 19 17 16 22 22 H 1.48493 * 109.47022 * 90.00032 * 21 19 17 23 23 H 1.48498 * 109.46934 * 209.99938 * 21 19 17 24 24 H 1.48496 * 109.46991 * 329.99802 * 21 19 17 25 25 C 1.52996 * 117.50310 * 56.09022 * 16 15 14 26 26 C 1.53000 * 60.03479 * 107.49883 * 25 16 15 27 27 H 1.08993 * 109.47308 * 299.21294 * 1 2 3 28 28 H 1.09000 * 109.47128 * 59.22049 * 1 2 3 29 29 H 1.09002 * 109.46793 * 179.20969 * 1 2 3 30 30 H 1.09000 * 111.00547 * 322.17812 * 4 2 1 31 31 H 1.08999 * 111.00339 * 86.03022 * 4 2 1 32 32 H 1.09003 * 109.47396 * 59.99863 * 7 5 4 33 33 H 1.08998 * 109.46556 * 180.02562 * 7 5 4 34 34 H 1.09003 * 109.47220 * 299.99647 * 7 5 4 35 35 H 1.08995 * 109.99448 * 218.66762 * 8 5 4 36 36 H 1.08996 * 109.77823 * 97.49334 * 8 5 4 37 37 H 0.97001 * 120.00241 * 354.98386 * 14 12 10 38 38 H 1.08994 * 109.46881 * 65.10419 * 15 14 12 39 39 H 1.08999 * 109.46649 * 305.10272 * 15 14 12 40 40 H 0.97002 * 120.00207 * 185.01456 * 20 19 17 41 41 H 1.08997 * 117.49469 * 359.97438 * 25 16 15 42 42 H 1.08999 * 117.50191 * 215.00204 * 25 16 15 43 43 H 1.09000 * 117.49994 * 107.47461 * 26 25 16 44 44 H 1.09000 * 117.49730 * 252.48073 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0716 -0.7755 -1.2269 5 6 3.4804 -1.1970 -0.7318 6 1 4.1966 -0.3875 -0.8723 7 6 3.9501 -2.4634 -1.4504 8 6 3.2540 -1.4696 0.7703 9 7 2.0431 -0.7373 1.1690 10 6 1.4960 -0.7356 2.4007 11 8 0.4936 -0.0872 2.6186 12 6 2.1237 -1.5324 3.4983 13 8 3.1744 -2.1082 3.3055 14 7 1.5230 -1.6113 4.7022 15 6 2.0793 -2.4796 5.7429 16 6 1.1462 -2.4845 6.9554 17 6 1.4177 -1.4221 7.9891 18 1 0.5954 -0.9418 8.4986 19 6 2.7158 -1.0635 8.2846 20 7 3.7114 -1.8454 7.9284 21 14 3.0604 0.5333 9.1909 22 1 3.0596 0.2818 10.6544 23 1 4.3867 1.0595 8.7797 24 1 2.0087 1.5277 8.8589 25 6 -0.3111 -2.8887 6.7237 26 6 0.6394 -3.8408 7.4522 27 1 -0.3633 0.5015 0.8969 28 1 -0.3633 0.5259 -0.8829 29 1 -0.3633 -1.0276 -0.0142 30 1 1.4551 -1.6486 -1.4404 31 1 2.1421 -0.1261 -2.0995 32 1 3.9951 -2.2769 -2.5234 33 1 4.9397 -2.7411 -1.0876 34 1 3.2498 -3.2748 -1.2518 35 1 4.1084 -1.1145 1.3464 36 1 3.1120 -2.5378 0.9340 37 1 0.7223 -1.0932 4.8796 38 1 3.0597 -2.1078 6.0404 39 1 2.1773 -3.4937 5.3557 40 1 4.6177 -1.6306 8.1991 41 1 -0.6052 -3.1507 5.7074 42 1 -1.0736 -2.3859 7.3187 43 1 0.5027 -3.9641 8.5265 44 1 0.9705 -4.7298 6.9153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326143894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:20 Heat of formation + Delta-G solvation = -45.198912 kcal Electronic energy + Delta-G solvation = -24414.388325 eV Core-core repulsion = 20946.535003 eV Total energy + Delta-G solvation = -3467.853322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59255 -38.75096 -37.48938 -36.74305 -33.48207 -32.87719 -32.28496 -31.79427 -27.30593 -26.86821 -25.82566 -25.43230 -23.65281 -21.44208 -20.89440 -20.61532 -19.42727 -18.97897 -17.40145 -17.06730 -16.10571 -15.92456 -15.31065 -14.88342 -14.60515 -14.42553 -14.18700 -13.81827 -13.63327 -13.41555 -13.10272 -12.98375 -12.66201 -12.55874 -12.28051 -11.95009 -11.80076 -11.72086 -11.60932 -11.18817 -10.99613 -10.94209 -10.83507 -10.82856 -10.57262 -10.52028 -10.32966 -9.59331 -9.26335 -8.93816 -8.83742 -8.69796 -8.36253 -8.01930 -6.15422 -4.16794 1.88531 2.63204 3.23482 3.32711 3.37095 3.68897 3.88939 4.29514 4.30972 4.45168 4.58562 4.85760 5.01619 5.05279 5.10950 5.15589 5.32718 5.41878 5.45878 5.47560 5.64954 5.66890 5.71074 5.85892 5.94794 5.96720 6.01397 6.08987 6.15350 6.27150 6.43340 6.46222 6.59704 6.61949 6.83969 6.98284 7.13915 7.27791 7.37245 7.54334 7.85253 7.91109 8.24156 8.31231 8.63721 8.79600 9.41653 10.86723 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.003959 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.249729 B = 7071.531868 C = 7206.355141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 H 0.078 0.922 4 C -0.126 4.126 5 C -0.110 4.110 6 H 0.084 0.916 7 C -0.141 4.141 8 C 0.113 3.887 9 N -0.594 5.594 10 C 0.523 3.477 11 O -0.522 6.522 12 C 0.494 3.506 13 O -0.532 6.532 14 N -0.673 5.673 15 C 0.141 3.859 16 C 0.038 3.962 17 C -0.495 4.495 18 H 0.064 0.936 19 C 0.072 3.928 20 N -0.871 5.871 21 Si 0.891 3.109 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.209 4.209 26 C -0.191 4.191 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.407 0.593 38 H 0.125 0.875 39 H 0.042 0.958 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 1.132 -18.121 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.029 3.971 3 H 0.095 0.905 4 C -0.164 4.164 5 C -0.129 4.129 6 H 0.102 0.898 7 C -0.198 4.198 8 C -0.010 4.010 9 N -0.329 5.329 10 C 0.307 3.693 11 O -0.398 6.398 12 C 0.273 3.727 13 O -0.410 6.410 14 N -0.323 5.323 15 C 0.020 3.980 16 C 0.037 3.963 17 C -0.532 4.532 18 H 0.083 0.917 19 C -0.132 4.132 20 N -0.508 5.508 21 Si 0.718 3.282 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.246 4.246 26 C -0.230 4.230 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.243 0.757 38 H 0.143 0.857 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.010 1.061 -18.057 18.117 hybrid contribution -0.131 0.916 0.644 1.128 sum -1.141 1.977 -17.413 17.562 Atomic orbital electron populations 1.22192 0.93680 1.02800 1.03755 1.21999 0.95458 0.95576 0.84049 0.90454 1.22967 0.96023 1.00569 0.96798 1.22309 0.97063 0.99119 0.94364 0.89755 1.21736 1.01705 0.96456 0.99911 1.22245 0.87239 0.97589 0.93903 1.48326 1.28063 1.47990 1.08563 1.20279 0.84113 0.82345 0.82578 1.90672 1.24619 1.42904 1.81584 1.19827 0.85736 0.83016 0.84117 1.90703 1.21728 1.46579 1.82029 1.46085 1.29884 1.44758 1.11576 1.21549 1.01282 0.91364 0.83820 1.19162 0.88805 0.93898 0.94457 1.20524 0.92220 1.19170 1.21297 0.91747 1.24988 0.96090 0.96694 0.95430 1.69797 1.00288 1.36291 1.44418 0.86591 0.77932 0.84000 0.79640 1.20533 1.20937 1.19546 1.22878 0.95410 1.06861 0.99459 1.22985 1.06210 0.94774 0.98982 0.89258 0.92049 0.92602 0.90327 0.89865 0.92270 0.92057 0.92288 0.90202 0.90368 0.75702 0.85740 0.93946 0.92379 0.91262 0.90306 0.90038 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.71 37.16 0.32 -1.59 16 2 C 0.13 1.49 3.76 -66.41 -0.25 1.24 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.06 5.96 -24.58 -0.15 -1.20 16 5 C -0.11 -0.98 3.54 -88.78 -0.31 -1.30 16 6 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 7 C -0.14 -1.07 9.16 37.16 0.34 -0.73 16 8 C 0.11 1.45 5.10 -3.06 -0.02 1.43 16 9 N -0.59 -8.63 3.24 -163.55 -0.53 -9.16 16 10 C 0.52 9.32 7.69 -11.59 -0.09 9.23 16 11 O -0.52 -9.88 14.14 5.49 0.08 -9.80 16 12 C 0.49 9.97 7.84 -11.59 -0.09 9.88 16 13 O -0.53 -11.48 14.16 5.50 0.08 -11.40 16 14 N -0.67 -14.27 5.40 -60.73 -0.33 -14.60 16 15 C 0.14 3.34 5.43 -4.04 -0.02 3.32 16 16 C 0.04 0.90 1.83 -155.62 -0.28 0.62 16 17 C -0.50 -13.04 9.00 -34.44 -0.31 -13.35 16 18 H 0.06 1.69 7.87 -52.48 -0.41 1.28 16 19 C 0.07 1.90 5.07 -17.82 -0.09 1.81 16 20 N -0.87 -23.88 11.00 55.43 0.61 -23.27 16 21 Si 0.89 20.65 29.57 -169.99 -5.03 15.63 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.21 -4.36 9.54 -26.73 -0.25 -4.62 16 26 C -0.19 -4.23 9.88 -26.69 -0.26 -4.50 16 27 H 0.09 1.26 5.89 -51.93 -0.31 0.96 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.66 7.96 -51.93 -0.41 0.25 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.08 1.13 7.61 -51.93 -0.39 0.73 16 36 H 0.08 1.08 7.31 -51.93 -0.38 0.70 16 37 H 0.41 8.38 7.73 -40.82 -0.32 8.06 16 38 H 0.13 3.36 5.28 -51.93 -0.27 3.09 16 39 H 0.04 1.00 7.88 -51.93 -0.41 0.59 16 40 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 43 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 44 H 0.07 1.39 8.04 -51.93 -0.42 0.98 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -28.74 354.73 -8.35 -37.08 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.11 Total: 9.92 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.47 Total: 0.26 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.25 Total: -47.03 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.16 Total: -21.20 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.74 -8.35 -37.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.115 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds