Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.32099 * 2 1 4 4 C 1.54911 * 110.45981 * 237.70343 * 2 1 3 5 5 C 1.55162 * 101.57697 * 204.10515 * 4 2 1 6 6 H 1.08999 * 110.71723 * 276.95901 * 5 4 2 7 7 C 1.52998 * 110.71586 * 153.86836 * 5 4 2 8 8 C 1.54331 * 103.02295 * 35.30780 * 5 4 2 9 9 N 1.47023 * 107.26464 * 338.14060 * 8 5 4 10 10 C 1.34774 * 125.64760 * 178.85013 * 9 8 5 11 11 O 1.21355 * 120.00193 * 179.69412 * 10 9 8 12 12 C 1.49447 * 120.00011 * 359.68846 * 10 9 8 13 13 O 1.21352 * 120.00169 * 4.95286 * 12 10 9 14 14 N 1.34777 * 119.99950 * 184.94576 * 12 10 9 15 15 C 1.46510 * 119.99833 * 174.98324 * 14 12 10 16 16 C 1.52998 * 109.46720 * 185.10520 * 15 14 12 17 17 C 1.50702 * 115.55957 * 270.39564 * 16 15 14 18 18 H 1.08004 * 119.99493 * 142.64560 * 17 16 15 19 19 C 1.37874 * 120.00191 * 322.64057 * 17 16 15 20 20 N 1.31508 * 120.00090 * 343.36192 * 19 17 16 21 21 Si 1.86808 * 119.99807 * 163.36397 * 19 17 16 22 22 H 1.48493 * 109.47022 * 90.00032 * 21 19 17 23 23 H 1.48498 * 109.46934 * 209.99938 * 21 19 17 24 24 H 1.48496 * 109.46991 * 329.99802 * 21 19 17 25 25 C 1.52996 * 117.50310 * 56.09022 * 16 15 14 26 26 C 1.53000 * 60.03479 * 107.49883 * 25 16 15 27 27 H 1.08993 * 109.47308 * 299.21294 * 1 2 3 28 28 H 1.09000 * 109.47128 * 59.22049 * 1 2 3 29 29 H 1.09002 * 109.46793 * 179.20969 * 1 2 3 30 30 H 1.09000 * 111.00547 * 322.17812 * 4 2 1 31 31 H 1.08999 * 111.00339 * 86.03022 * 4 2 1 32 32 H 1.09003 * 109.47396 * 59.99863 * 7 5 4 33 33 H 1.08998 * 109.46556 * 180.02562 * 7 5 4 34 34 H 1.09003 * 109.47220 * 299.99647 * 7 5 4 35 35 H 1.08995 * 109.99448 * 218.66762 * 8 5 4 36 36 H 1.08996 * 109.77823 * 97.49334 * 8 5 4 37 37 H 0.97001 * 120.00241 * 354.98386 * 14 12 10 38 38 H 1.08994 * 109.46881 * 65.10419 * 15 14 12 39 39 H 1.08999 * 109.46649 * 305.10272 * 15 14 12 40 40 H 0.97002 * 120.00207 * 185.01456 * 20 19 17 41 41 H 1.08997 * 117.49469 * 359.97438 * 25 16 15 42 42 H 1.08999 * 117.50191 * 215.00204 * 25 16 15 43 43 H 1.09000 * 117.49994 * 107.47461 * 26 25 16 44 44 H 1.09000 * 117.49730 * 252.48073 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0716 -0.7755 -1.2269 5 6 3.4804 -1.1970 -0.7318 6 1 4.1966 -0.3875 -0.8723 7 6 3.9501 -2.4634 -1.4504 8 6 3.2540 -1.4696 0.7703 9 7 2.0431 -0.7373 1.1690 10 6 1.4960 -0.7356 2.4007 11 8 0.4936 -0.0872 2.6186 12 6 2.1237 -1.5324 3.4983 13 8 3.1744 -2.1082 3.3055 14 7 1.5230 -1.6113 4.7022 15 6 2.0793 -2.4796 5.7429 16 6 1.1462 -2.4845 6.9554 17 6 1.4177 -1.4221 7.9891 18 1 0.5954 -0.9418 8.4986 19 6 2.7158 -1.0635 8.2846 20 7 3.7114 -1.8454 7.9284 21 14 3.0604 0.5333 9.1909 22 1 3.0596 0.2818 10.6544 23 1 4.3867 1.0595 8.7797 24 1 2.0087 1.5277 8.8589 25 6 -0.3111 -2.8887 6.7237 26 6 0.6394 -3.8408 7.4522 27 1 -0.3633 0.5015 0.8969 28 1 -0.3633 0.5259 -0.8829 29 1 -0.3633 -1.0276 -0.0142 30 1 1.4551 -1.6486 -1.4404 31 1 2.1421 -0.1261 -2.0995 32 1 3.9951 -2.2769 -2.5234 33 1 4.9397 -2.7411 -1.0876 34 1 3.2498 -3.2748 -1.2518 35 1 4.1084 -1.1145 1.3464 36 1 3.1120 -2.5378 0.9340 37 1 0.7223 -1.0932 4.8796 38 1 3.0597 -2.1078 6.0404 39 1 2.1773 -3.4937 5.3557 40 1 4.6177 -1.6306 8.1991 41 1 -0.6052 -3.1507 5.7074 42 1 -1.0736 -2.3859 7.3187 43 1 0.5027 -3.9641 8.5265 44 1 0.9705 -4.7298 6.9153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326143894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = -62.530922 kcal Electronic energy + Delta-G solvation = -24415.139897 eV Core-core repulsion = 20946.535003 eV Total energy + Delta-G solvation = -3468.604894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91807 -40.17319 -38.78510 -38.52264 -35.04450 -34.28242 -33.91770 -32.83636 -28.67985 -28.00698 -27.52360 -26.72307 -25.02169 -23.10174 -22.19830 -21.42090 -21.22150 -20.50479 -18.87911 -18.23645 -17.87249 -17.33978 -16.83776 -16.67511 -16.12388 -15.81060 -15.37589 -15.18037 -15.06934 -14.64955 -14.38837 -14.15483 -13.73749 -13.64628 -13.61709 -13.48626 -13.17948 -12.90816 -12.77007 -12.72227 -12.65009 -12.40498 -12.33011 -12.10919 -11.72776 -11.66607 -11.49958 -11.39840 -11.18433 -10.70389 -10.46669 -10.19868 -9.94441 -9.79109 -8.16065 -6.22435 0.37786 1.29808 1.38102 1.43394 1.52199 2.15279 2.37786 2.51253 2.94595 3.33040 3.48845 3.62140 3.69107 3.85498 4.14950 4.16428 4.28431 4.35282 4.46795 4.57911 4.60681 4.64785 4.71371 4.75589 4.83521 4.85442 4.91107 5.00696 5.01537 5.05359 5.13383 5.15607 5.20916 5.31444 5.40612 5.42336 5.51312 5.51980 5.56910 5.91089 6.07438 6.31022 6.34130 6.69224 6.79839 7.02973 7.37820 8.85176 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.003959 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.249729 B = 7071.531868 C = 7206.355141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 H 0.088 0.912 4 C -0.112 4.112 5 C -0.099 4.099 6 H 0.099 0.901 7 C -0.138 4.138 8 C 0.106 3.894 9 N -0.587 5.587 10 C 0.522 3.478 11 O -0.538 6.538 12 C 0.490 3.510 13 O -0.550 6.550 14 N -0.675 5.675 15 C 0.155 3.845 16 C 0.007 3.993 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.947 3.053 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.268 1.268 25 C -0.181 4.181 26 C -0.190 4.190 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 1.867 -20.452 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.105 0.895 4 C -0.150 4.150 5 C -0.118 4.118 6 H 0.117 0.883 7 C -0.195 4.195 8 C -0.016 4.016 9 N -0.321 5.321 10 C 0.305 3.695 11 O -0.416 6.416 12 C 0.270 3.730 13 O -0.430 6.430 14 N -0.325 5.325 15 C 0.033 3.967 16 C 0.006 3.994 17 C -0.547 4.547 18 H 0.078 0.922 19 C -0.172 4.172 20 N -0.535 5.535 21 Si 0.773 3.227 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.193 1.193 25 C -0.218 4.218 26 C -0.229 4.229 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.246 0.754 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.583 1.797 -20.422 20.562 hybrid contribution 0.060 0.655 1.320 1.475 sum -1.524 2.453 -19.102 19.319 Atomic orbital electron populations 1.22122 0.93658 1.02362 1.03763 1.22387 0.95606 0.96239 0.83798 0.89456 1.22983 0.94936 1.00846 0.96231 1.22307 0.98043 1.00365 0.91074 0.88275 1.21730 1.01294 0.95441 1.01076 1.22386 0.85885 0.96504 0.96853 1.48490 1.28065 1.47366 1.08213 1.19742 0.84180 0.82412 0.83162 1.90674 1.25213 1.43696 1.82005 1.20385 0.85394 0.82739 0.84450 1.90685 1.22530 1.47300 1.82452 1.45983 1.30061 1.44791 1.11666 1.21125 0.99958 0.91145 0.84483 1.19189 0.91062 0.94619 0.94497 1.20783 0.92223 1.19936 1.21755 0.92174 1.25628 0.96022 0.99062 0.96462 1.69920 1.00404 1.37633 1.45590 0.85716 0.77452 0.80726 0.78856 1.19813 1.21175 1.19257 1.22870 0.93790 1.04912 1.00256 1.22981 1.06341 0.94481 0.99064 0.92201 0.88920 0.93318 0.90012 0.86470 0.89965 0.92329 0.92900 0.92005 0.91744 0.75356 0.89029 0.94455 0.92589 0.89548 0.89527 0.90493 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.71 71.98 0.63 -2.77 16 2 C 0.12 2.47 3.76 45.47 0.17 2.64 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -1.48 5.96 31.99 0.19 -1.29 16 5 C -0.10 -1.51 3.54 -9.60 -0.03 -1.55 16 6 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 7 C -0.14 -1.74 9.16 71.98 0.66 -1.08 16 8 C 0.11 2.67 5.10 86.73 0.44 3.11 16 9 N -0.59 -16.71 3.24 -789.70 -2.56 -19.27 16 10 C 0.52 18.78 7.69 87.27 0.67 19.45 16 11 O -0.54 -20.50 14.14 -3.26 -0.05 -20.54 16 12 C 0.49 20.28 7.84 87.27 0.68 20.97 16 13 O -0.55 -24.55 14.16 -3.25 -0.05 -24.59 16 14 N -0.67 -29.24 5.40 -464.40 -2.51 -31.75 16 15 C 0.16 7.55 5.43 86.38 0.47 8.02 16 16 C 0.01 0.35 1.83 -52.90 -0.10 0.25 16 17 C -0.51 -27.11 9.00 25.60 0.23 -26.88 16 18 H 0.06 3.16 7.87 -2.91 -0.02 3.14 16 19 C 0.03 1.57 5.07 84.65 0.43 2.00 16 20 N -0.90 -50.44 11.00 21.45 0.24 -50.21 16 21 Si 0.95 42.85 29.57 68.60 2.03 44.87 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C -0.18 -7.37 9.54 30.59 0.29 -7.08 16 26 C -0.19 -8.35 9.88 30.62 0.30 -8.05 16 27 H 0.06 1.64 5.89 -2.39 -0.01 1.63 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 31 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.06 1.78 7.61 -2.39 -0.02 1.76 16 36 H 0.06 1.80 7.31 -2.39 -0.02 1.78 16 37 H 0.41 17.13 7.73 -92.71 -0.72 16.42 16 38 H 0.09 5.14 5.28 -2.39 -0.01 5.13 16 39 H 0.04 1.80 7.88 -2.39 -0.02 1.78 16 40 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.08 3.18 8.04 -2.39 -0.02 3.16 16 Total: -1.00 -63.24 354.73 2.42 -60.82 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.28 Total: 32.93 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.04 Total: 7.75 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.83 Total: -101.23 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.09 Total: -45.14 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.24 2.42 -60.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.709 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds