Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.88855 * 2 1 4 4 C 1.55160 * 111.00227 * 236.07809 * 2 1 3 5 5 C 1.54328 * 102.94087 * 206.42387 * 4 2 1 6 6 N 1.47029 * 107.26999 * 22.19663 * 5 4 2 7 7 C 1.34775 * 125.64557 * 181.09636 * 6 5 4 8 8 O 1.21350 * 119.99783 * 179.97438 * 7 6 5 9 9 C 1.49456 * 119.99969 * 359.95092 * 7 6 5 10 10 O 1.21352 * 120.00236 * 353.05303 * 9 7 6 11 11 N 1.34780 * 119.99927 * 173.04928 * 9 7 6 12 12 C 1.46930 * 120.62816 * 1.65974 * 11 9 7 13 13 C 1.52763 * 109.00674 * 233.58368 * 12 11 9 14 14 C 1.53043 * 109.38176 * 305.58748 * 13 12 11 15 15 C 1.50697 * 109.45940 * 181.26207 * 14 13 12 16 16 H 1.08004 * 120.00054 * 275.10853 * 15 14 13 17 17 C 1.37880 * 120.00254 * 95.10024 * 15 14 13 18 18 N 1.31511 * 120.00362 * 174.92136 * 17 15 14 19 19 Si 1.86803 * 119.99608 * 354.92404 * 17 15 14 20 20 H 1.48490 * 109.47123 * 94.83277 * 19 17 15 21 21 H 1.48501 * 109.46702 * 214.83307 * 19 17 15 22 22 H 1.48497 * 109.46952 * 334.83043 * 19 17 15 23 23 C 1.53042 * 109.53508 * 61.24095 * 14 13 12 24 24 C 1.46917 * 120.63158 * 181.94012 * 11 9 7 25 25 C 1.47426 * 108.70218 * 1.05369 * 6 5 4 26 26 H 1.09010 * 109.46871 * 297.57257 * 1 2 3 27 27 H 1.09004 * 109.47247 * 57.57025 * 1 2 3 28 28 H 1.08997 * 109.47598 * 177.57671 * 1 2 3 29 29 H 1.08995 * 110.71946 * 324.78479 * 4 2 1 30 30 H 1.08993 * 110.71899 * 88.06071 * 4 2 1 31 31 H 1.08993 * 109.88288 * 262.77294 * 5 4 2 32 32 H 1.09000 * 109.87724 * 141.60862 * 5 4 2 33 33 H 1.09002 * 109.58394 * 353.41961 * 12 11 9 34 34 H 1.08998 * 109.58655 * 113.84236 * 12 11 9 35 35 H 1.09001 * 109.56288 * 185.55409 * 13 12 11 36 36 H 1.08992 * 109.35868 * 65.50086 * 13 12 11 37 37 H 1.08998 * 109.46087 * 301.22171 * 14 13 12 38 38 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.49446 * 178.67970 * 23 14 13 40 40 H 1.09004 * 109.49445 * 58.59093 * 23 14 13 41 41 H 1.09002 * 109.59053 * 246.15727 * 24 11 9 42 42 H 1.09001 * 109.58778 * 6.58174 * 24 11 9 43 43 H 1.09003 * 110.36318 * 217.03154 * 25 6 5 44 44 H 1.08999 * 110.36387 * 94.71461 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8084 -1.2020 5 6 3.4674 -1.2744 -0.6956 6 7 3.4270 -1.2429 0.7738 7 6 4.4480 -1.5598 1.5945 8 8 4.3013 -1.4971 2.7975 9 6 5.7606 -1.9890 1.0231 10 8 5.8711 -2.1740 -0.1711 11 7 6.8216 -2.1706 1.8342 12 6 6.6942 -1.9857 3.2862 13 6 7.7616 -0.9999 3.7578 14 6 9.1395 -1.4879 3.3045 15 6 10.1968 -0.5329 3.7953 16 1 10.4340 0.3513 3.2222 17 6 10.8614 -0.7877 4.9762 18 7 11.8519 -0.0098 5.3545 19 14 10.3547 -2.2382 6.0388 20 1 11.2063 -3.4106 5.7147 21 1 10.5230 -1.8849 7.4713 22 1 8.9319 -2.5718 5.7751 23 6 9.1817 -1.5537 1.7760 24 6 8.1290 -2.5512 1.2826 25 6 2.0852 -0.8062 1.2006 26 1 -0.3633 0.4757 0.9110 27 1 -0.3634 0.5511 -0.8674 28 1 -0.3634 -1.0267 -0.0434 29 1 1.4467 -1.6637 -1.4203 30 1 2.1920 -0.1707 -2.0795 31 1 4.2425 -0.6002 -1.0598 32 1 3.6648 -2.2898 -1.0393 33 1 5.7053 -1.5905 3.5188 34 1 6.8356 -2.9419 3.7901 35 1 7.7397 -0.9310 4.8454 36 1 7.5630 -0.0188 3.3266 37 1 9.3269 -2.4797 3.7159 38 1 12.3196 -0.1893 6.1851 39 1 10.1708 -1.8788 1.4531 40 1 8.9699 -0.5672 1.3635 41 1 8.3900 -3.5544 1.6197 42 1 8.0867 -2.5289 0.1936 43 1 2.1560 -0.1713 2.0838 44 1 1.4518 -1.6699 1.4030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326795999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = -55.847829 kcal Electronic energy + Delta-G solvation = -24508.214714 eV Core-core repulsion = 21039.899620 eV Total energy + Delta-G solvation = -3468.315094 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94360 -39.18796 -37.82547 -37.08303 -33.64425 -33.03117 -31.48976 -30.51212 -29.93415 -27.65384 -26.57997 -24.45872 -23.13080 -22.49421 -21.64200 -20.67230 -19.81557 -18.72180 -17.21271 -16.95281 -16.87891 -16.41049 -15.86216 -15.42387 -14.45908 -14.36878 -14.10389 -14.03119 -13.68000 -13.42383 -13.31548 -13.10690 -12.89221 -12.84075 -12.75096 -12.45229 -12.13625 -11.96057 -11.86057 -11.42456 -11.16924 -11.03884 -10.97621 -10.85381 -10.64842 -10.40523 -9.97885 -9.71684 -9.43292 -9.18250 -8.99895 -8.75544 -8.43855 -8.23315 -6.07532 -4.06101 1.51812 2.28979 3.28102 3.30080 3.38089 3.40806 3.48532 4.05641 4.26801 4.39421 4.42542 4.45642 4.95493 4.99479 5.07131 5.22433 5.25686 5.31733 5.42680 5.50396 5.54364 5.61100 5.70889 5.73429 5.75475 5.77535 5.88136 5.89118 5.98287 5.99429 6.22697 6.34424 6.45393 6.65575 6.73809 6.83244 6.90384 7.09027 7.31599 7.44628 7.57402 7.75309 7.80381 8.13857 8.52993 8.97864 9.56031 11.05980 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.003570 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.157726 B = 7841.149922 C = 8196.798418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.132 4.132 5 C 0.107 3.893 6 N -0.593 5.593 7 C 0.524 3.476 8 O -0.507 6.507 9 C 0.504 3.496 10 O -0.536 6.536 11 N -0.562 5.562 12 C 0.042 3.958 13 C -0.123 4.123 14 C 0.013 3.987 15 C -0.510 4.510 16 H 0.071 0.929 17 C 0.070 3.930 18 N -0.902 5.902 19 Si 0.874 3.126 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.259 1.259 23 C -0.115 4.115 24 C 0.104 3.896 25 C 0.107 3.893 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.820 -3.058 -11.584 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.015 4.015 6 N -0.327 5.327 7 C 0.309 3.691 8 O -0.385 6.385 9 C 0.286 3.714 10 O -0.415 6.415 11 N -0.293 5.293 12 C -0.079 4.079 13 C -0.162 4.162 14 C -0.006 4.006 15 C -0.548 4.548 16 H 0.089 0.911 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.702 3.298 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.184 1.184 23 C -0.154 4.154 24 C -0.018 4.018 25 C -0.015 4.015 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.597 -3.126 -11.359 24.601 hybrid contribution 0.098 -0.728 0.782 1.073 sum -21.498 -3.853 -10.578 24.267 Atomic orbital electron populations 1.21691 0.93462 1.02306 1.02327 1.22391 0.96372 0.99599 0.94327 0.89453 1.22831 0.95680 1.00304 0.98130 1.22194 0.97635 1.03111 0.78584 1.48293 1.11646 1.64857 1.07952 1.20136 0.84825 0.78146 0.85961 1.90354 1.80961 1.53140 1.14000 1.19726 0.85049 0.80086 0.86543 1.90692 1.84072 1.52101 1.14603 1.48109 1.08784 1.63547 1.08903 1.23379 1.06191 1.00990 0.77304 1.22131 0.95631 0.97669 1.00734 1.19166 0.93156 0.96907 0.91397 1.20983 1.18012 1.08773 1.07055 0.91063 1.25070 0.94327 0.96274 0.97503 1.69916 1.21584 1.39126 1.23350 0.86891 0.79937 0.83127 0.79863 1.20546 1.21517 1.18381 1.21945 0.96706 0.97730 0.98970 1.21977 0.81582 0.98898 0.99341 1.22438 0.82214 0.98661 0.98192 0.92124 0.91960 0.92246 0.90391 0.89760 0.90409 0.90107 0.83795 0.92278 0.91555 0.92700 0.95043 0.92725 0.91000 0.92500 0.91491 0.89722 0.89859 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.29 37.16 0.35 -0.36 16 2 C -0.11 -0.74 3.64 -88.47 -0.32 -1.06 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.89 6.42 -24.89 -0.16 -1.05 16 5 C 0.11 1.10 5.49 -3.06 -0.02 1.08 16 6 N -0.59 -7.32 3.33 -171.02 -0.57 -7.89 16 7 C 0.52 8.16 7.83 -11.58 -0.09 8.07 16 8 O -0.51 -8.67 13.28 5.50 0.07 -8.60 16 9 C 0.50 8.56 7.71 -11.58 -0.09 8.47 16 10 O -0.54 -9.34 13.60 5.50 0.07 -9.26 16 11 N -0.56 -10.03 2.98 -173.54 -0.52 -10.54 16 12 C 0.04 0.77 6.20 -3.93 -0.02 0.75 16 13 C -0.12 -2.61 5.08 -26.83 -0.14 -2.74 16 14 C 0.01 0.29 1.61 -91.73 -0.15 0.15 16 15 C -0.51 -14.11 8.86 -34.44 -0.31 -14.42 16 16 H 0.07 2.16 8.06 -52.48 -0.42 1.73 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 19 Si 0.87 21.32 26.57 -169.99 -4.52 16.80 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.26 -5.97 6.11 56.52 0.35 -5.62 16 23 C -0.12 -2.30 5.34 -26.61 -0.14 -2.44 16 24 C 0.10 1.80 6.43 -3.72 -0.02 1.77 16 25 C 0.11 1.01 6.38 -2.53 -0.02 0.99 16 26 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 29 H 0.08 0.46 8.01 -51.93 -0.42 0.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.87 7.74 -51.93 -0.40 0.47 16 32 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 33 H 0.15 2.65 3.79 -56.97 -0.22 2.43 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.45 7.18 -51.93 -0.37 1.08 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.73 5.59 -51.93 -0.29 0.44 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.40 7.01 -51.93 -0.36 1.04 16 43 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 44 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -31.56 340.49 -7.90 -39.47 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.13 Total: 0.53 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.23 Total: 1.11 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.31 Total: -45.17 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.15 Total: -17.86 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.52 Total: 16.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.56 -7.90 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326795999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.380 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds