Wall clock time and date at job start Tue Mar 31 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.88855 * 2 1 4 4 C 1.55160 * 111.00227 * 236.07809 * 2 1 3 5 5 C 1.54328 * 102.94087 * 206.42387 * 4 2 1 6 6 N 1.47029 * 107.26999 * 22.19663 * 5 4 2 7 7 C 1.34775 * 125.64557 * 181.09636 * 6 5 4 8 8 O 1.21350 * 119.99783 * 179.97438 * 7 6 5 9 9 C 1.49456 * 119.99969 * 359.95092 * 7 6 5 10 10 O 1.21352 * 120.00236 * 353.05303 * 9 7 6 11 11 N 1.34780 * 119.99927 * 173.04928 * 9 7 6 12 12 C 1.46930 * 120.62816 * 1.65974 * 11 9 7 13 13 C 1.52763 * 109.00674 * 233.58368 * 12 11 9 14 14 C 1.53043 * 109.38176 * 305.58748 * 13 12 11 15 15 C 1.50697 * 109.45940 * 181.26207 * 14 13 12 16 16 H 1.08004 * 120.00054 * 275.10853 * 15 14 13 17 17 C 1.37880 * 120.00254 * 95.10024 * 15 14 13 18 18 N 1.31511 * 120.00362 * 174.92136 * 17 15 14 19 19 Si 1.86803 * 119.99608 * 354.92404 * 17 15 14 20 20 H 1.48490 * 109.47123 * 94.83277 * 19 17 15 21 21 H 1.48501 * 109.46702 * 214.83307 * 19 17 15 22 22 H 1.48497 * 109.46952 * 334.83043 * 19 17 15 23 23 C 1.53042 * 109.53508 * 61.24095 * 14 13 12 24 24 C 1.46917 * 120.63158 * 181.94012 * 11 9 7 25 25 C 1.47426 * 108.70218 * 1.05369 * 6 5 4 26 26 H 1.09010 * 109.46871 * 297.57257 * 1 2 3 27 27 H 1.09004 * 109.47247 * 57.57025 * 1 2 3 28 28 H 1.08997 * 109.47598 * 177.57671 * 1 2 3 29 29 H 1.08995 * 110.71946 * 324.78479 * 4 2 1 30 30 H 1.08993 * 110.71899 * 88.06071 * 4 2 1 31 31 H 1.08993 * 109.88288 * 262.77294 * 5 4 2 32 32 H 1.09000 * 109.87724 * 141.60862 * 5 4 2 33 33 H 1.09002 * 109.58394 * 353.41961 * 12 11 9 34 34 H 1.08998 * 109.58655 * 113.84236 * 12 11 9 35 35 H 1.09001 * 109.56288 * 185.55409 * 13 12 11 36 36 H 1.08992 * 109.35868 * 65.50086 * 13 12 11 37 37 H 1.08998 * 109.46087 * 301.22171 * 14 13 12 38 38 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 39 39 H 1.09008 * 109.49446 * 178.67970 * 23 14 13 40 40 H 1.09004 * 109.49445 * 58.59093 * 23 14 13 41 41 H 1.09002 * 109.59053 * 246.15727 * 24 11 9 42 42 H 1.09001 * 109.58778 * 6.58174 * 24 11 9 43 43 H 1.09003 * 110.36318 * 217.03154 * 25 6 5 44 44 H 1.08999 * 110.36387 * 94.71461 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8084 -1.2020 5 6 3.4674 -1.2744 -0.6956 6 7 3.4270 -1.2429 0.7738 7 6 4.4480 -1.5598 1.5945 8 8 4.3013 -1.4971 2.7975 9 6 5.7606 -1.9890 1.0231 10 8 5.8711 -2.1740 -0.1711 11 7 6.8216 -2.1706 1.8342 12 6 6.6942 -1.9857 3.2862 13 6 7.7616 -0.9999 3.7578 14 6 9.1395 -1.4879 3.3045 15 6 10.1968 -0.5329 3.7953 16 1 10.4340 0.3513 3.2222 17 6 10.8614 -0.7877 4.9762 18 7 11.8519 -0.0098 5.3545 19 14 10.3547 -2.2382 6.0388 20 1 11.2063 -3.4106 5.7147 21 1 10.5230 -1.8849 7.4713 22 1 8.9319 -2.5718 5.7751 23 6 9.1817 -1.5537 1.7760 24 6 8.1290 -2.5512 1.2826 25 6 2.0852 -0.8062 1.2006 26 1 -0.3633 0.4757 0.9110 27 1 -0.3634 0.5511 -0.8674 28 1 -0.3634 -1.0267 -0.0434 29 1 1.4467 -1.6637 -1.4203 30 1 2.1920 -0.1707 -2.0795 31 1 4.2425 -0.6002 -1.0598 32 1 3.6648 -2.2898 -1.0393 33 1 5.7053 -1.5905 3.5188 34 1 6.8356 -2.9419 3.7901 35 1 7.7397 -0.9310 4.8454 36 1 7.5630 -0.0188 3.3266 37 1 9.3269 -2.4797 3.7159 38 1 12.3196 -0.1893 6.1851 39 1 10.1708 -1.8788 1.4531 40 1 8.9699 -0.5672 1.3635 41 1 8.3900 -3.5544 1.6197 42 1 8.0867 -2.5289 0.1936 43 1 2.1560 -0.1713 2.0838 44 1 1.4518 -1.6699 1.4030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326795999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:16 Heat of formation + Delta-G solvation = -76.103801 kcal Electronic energy + Delta-G solvation = -24509.093078 eV Core-core repulsion = 21039.899620 eV Total energy + Delta-G solvation = -3469.193459 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15353 -40.31156 -38.94578 -38.53255 -35.33934 -34.00927 -33.37661 -32.04840 -30.65923 -28.88369 -27.94168 -25.73069 -24.27737 -24.09338 -22.95579 -21.34505 -21.18787 -20.14603 -19.01470 -18.33062 -18.19204 -17.48671 -17.11797 -16.49832 -16.30853 -15.53626 -15.51788 -15.10736 -14.78725 -14.71387 -14.63535 -14.42555 -14.18002 -14.06553 -13.70832 -13.63546 -13.51101 -13.27357 -12.86621 -12.66890 -12.53870 -12.38234 -12.09192 -12.01102 -11.78444 -11.64355 -11.57568 -11.42659 -11.21067 -11.10286 -10.72815 -10.10069 -9.92300 -9.68601 -8.28532 -6.32014 0.26129 1.15621 1.35429 1.39025 1.50768 2.03631 2.30499 2.36536 3.01109 3.07306 3.55696 3.60990 3.91116 4.00787 4.17170 4.22550 4.27259 4.29238 4.36790 4.48635 4.55785 4.58938 4.65387 4.74519 4.76613 4.83711 4.87922 4.93886 4.94791 5.03953 5.08898 5.12513 5.16107 5.24177 5.31801 5.34033 5.47251 5.53282 5.67714 5.72066 5.98645 6.19692 6.32813 6.54983 6.74724 6.85020 7.33670 8.88816 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.003570 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.157726 B = 7841.149922 C = 8196.798418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.085 0.915 4 C -0.120 4.120 5 C 0.101 3.899 6 N -0.587 5.587 7 C 0.519 3.481 8 O -0.529 6.529 9 C 0.503 3.497 10 O -0.541 6.541 11 N -0.571 5.571 12 C 0.053 3.947 13 C -0.118 4.118 14 C 0.012 3.988 15 C -0.514 4.514 16 H 0.026 0.974 17 C 0.009 3.991 18 N -0.953 5.953 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.290 1.290 22 H -0.235 1.235 23 C -0.110 4.110 24 C 0.111 3.889 25 C 0.099 3.901 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.732 -4.812 -12.471 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.021 4.021 6 N -0.320 5.320 7 C 0.303 3.697 8 O -0.409 6.409 9 C 0.286 3.714 10 O -0.420 6.420 11 N -0.303 5.303 12 C -0.067 4.067 13 C -0.157 4.157 14 C -0.007 4.007 15 C -0.552 4.552 16 H 0.044 0.956 17 C -0.188 4.188 18 N -0.593 5.593 19 Si 0.764 3.236 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.157 1.157 23 C -0.148 4.148 24 C -0.010 4.010 25 C -0.022 4.022 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.557 -4.875 -12.306 27.897 hybrid contribution 1.003 -0.062 0.928 1.368 sum -23.554 -4.937 -11.377 26.620 Atomic orbital electron populations 1.21673 0.91648 1.03000 1.03008 1.22381 0.97663 0.98948 0.92882 0.89691 1.22835 0.93421 1.01104 0.98416 1.22354 0.99741 1.02669 0.77336 1.48452 1.11878 1.62882 1.08751 1.19872 0.84991 0.78878 0.85995 1.90314 1.81198 1.54682 1.14664 1.20027 0.85527 0.79480 0.86386 1.90684 1.84397 1.52099 1.14809 1.48142 1.09222 1.64165 1.08730 1.23253 1.05176 1.00542 0.77757 1.21976 0.95552 0.97921 1.00218 1.19155 0.92535 0.95692 0.93333 1.21256 1.19149 1.08148 1.06625 0.95610 1.25988 0.94191 0.99563 0.99011 1.70074 1.23374 1.41695 1.24206 0.85825 0.80984 0.79319 0.77432 1.19486 1.21603 1.15744 1.21805 0.98080 0.98052 0.96857 1.21893 0.80589 0.98654 0.99866 1.22726 0.80851 0.99443 0.99160 0.91967 0.90766 0.91595 0.88798 0.88020 0.91611 0.90676 0.83218 0.91155 0.92273 0.94075 0.94412 0.92630 0.90881 0.93970 0.89607 0.88708 0.90708 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.29 71.98 0.67 -0.25 16 2 C -0.10 -1.09 3.64 -9.40 -0.03 -1.13 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.12 -1.26 6.42 31.79 0.20 -1.05 16 5 C 0.10 1.89 5.49 86.73 0.48 2.37 16 6 N -0.59 -13.60 3.33 -813.34 -2.71 -16.31 16 7 C 0.52 15.56 7.83 87.27 0.68 16.24 16 8 O -0.53 -17.53 13.28 -3.25 -0.04 -17.57 16 9 C 0.50 16.44 7.71 87.27 0.67 17.11 16 10 O -0.54 -18.10 13.60 -3.25 -0.04 -18.14 16 11 N -0.57 -19.50 2.98 -821.31 -2.45 -21.95 16 12 C 0.05 1.89 6.20 86.22 0.53 2.42 16 13 C -0.12 -4.94 5.08 30.53 0.15 -4.79 16 14 C 0.01 0.54 1.61 -11.51 -0.02 0.52 16 15 C -0.51 -29.29 8.86 25.60 0.23 -29.06 16 16 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 17 C 0.01 0.52 5.47 84.66 0.46 0.98 16 18 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 19 Si 0.94 43.74 26.57 68.60 1.82 45.57 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.23 -9.87 6.11 99.48 0.61 -9.26 16 23 C -0.11 -4.34 5.34 30.67 0.16 -4.18 16 24 C 0.11 3.67 6.43 86.36 0.56 4.22 16 25 C 0.10 1.67 6.38 86.85 0.55 2.22 16 26 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.07 0.39 8.11 -2.39 -0.02 0.37 16 29 H 0.09 0.74 8.01 -2.39 -0.02 0.72 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.40 7.74 -2.39 -0.02 1.38 16 32 H 0.07 1.51 7.56 -2.39 -0.02 1.50 16 33 H 0.15 5.31 3.79 -82.23 -0.31 5.00 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.53 7.18 -2.39 -0.02 2.52 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.68 5.59 -2.39 -0.01 1.67 16 38 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.09 2.96 7.01 -2.39 -0.02 2.94 16 43 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 44 H 0.09 1.27 8.04 -2.39 -0.02 1.25 16 Total: -1.00 -69.82 340.49 2.77 -67.05 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.58 Total: 15.50 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.31 Total: 5.63 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.85 Total: -98.03 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.09 Total: -35.72 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.82 Total: 45.57 kcal Total: -69.82 2.77 -67.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326795999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.057 kcal (2) G-P(sol) polarization free energy of solvation -69.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds