Wall clock time and date at job start Tue Mar 31 2020 06:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.88794 * 2 1 4 4 C 1.55157 * 111.03948 * 123.90660 * 2 1 3 5 5 C 1.54317 * 102.94482 * 153.59232 * 4 2 1 6 6 N 1.47288 * 107.30839 * 337.81204 * 5 4 2 7 7 C 1.34769 * 125.79822 * 178.92180 * 6 5 4 8 8 O 1.21354 * 120.00537 * 180.02562 * 7 6 5 9 9 C 1.49451 * 119.99968 * 0.02562 * 7 6 5 10 10 O 1.21351 * 119.99854 * 6.74498 * 9 7 6 11 11 N 1.34775 * 120.00173 * 186.74881 * 9 7 6 12 12 C 1.46926 * 120.63173 * 8.41697 * 11 9 7 13 13 C 1.53627 * 108.54114 * 126.37063 * 12 11 9 14 14 C 1.53041 * 109.24054 * 54.86112 * 13 12 11 15 15 C 1.50694 * 109.45812 * 178.49096 * 14 13 12 16 16 H 1.07998 * 120.00600 * 120.06957 * 15 14 13 17 17 C 1.37877 * 120.00124 * 300.06582 * 15 14 13 18 18 N 1.31518 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00410 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47136 * 89.99886 * 19 17 15 21 21 H 1.48500 * 109.47233 * 209.99800 * 19 17 15 22 22 H 1.48503 * 109.46954 * 329.99949 * 19 17 15 23 23 C 1.53044 * 109.53752 * 298.50906 * 14 13 12 24 24 C 1.46929 * 120.63142 * 188.70468 * 11 9 7 25 25 C 1.47426 * 108.55621 * 358.92996 * 6 5 4 26 26 H 1.09006 * 109.47162 * 182.42546 * 1 2 3 27 27 H 1.09001 * 109.47546 * 302.42714 * 1 2 3 28 28 H 1.08999 * 109.47440 * 62.42434 * 1 2 3 29 29 H 1.09000 * 110.71796 * 271.95510 * 4 2 1 30 30 H 1.09005 * 110.72194 * 35.04777 * 4 2 1 31 31 H 1.08999 * 109.88628 * 97.22685 * 5 4 2 32 32 H 1.09001 * 109.88005 * 218.39332 * 5 4 2 33 33 H 1.08996 * 109.58644 * 246.20658 * 12 11 9 34 34 H 1.08995 * 109.58400 * 6.63049 * 12 11 9 35 35 H 1.08998 * 109.63621 * 294.86514 * 13 12 11 36 36 H 1.09002 * 109.42655 * 174.72788 * 13 12 11 37 37 H 1.09002 * 109.45108 * 58.52218 * 14 13 12 38 38 H 0.97000 * 120.00637 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.49608 * 301.41864 * 23 14 13 40 40 H 1.08994 * 109.49763 * 181.32387 * 23 14 13 41 41 H 1.09001 * 109.58301 * 353.36748 * 24 11 9 42 42 H 1.08996 * 109.59067 * 113.65036 * 24 11 9 43 43 H 1.08995 * 110.36820 * 265.25612 * 25 6 5 44 44 H 1.09000 * 110.37275 * 143.04482 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0870 -0.8078 1.2019 5 6 3.4683 -1.2732 0.6952 6 7 3.4284 -1.2420 -0.7768 7 6 4.4475 -1.5583 -1.6000 8 8 4.2983 -1.4950 -2.8026 9 6 5.7616 -1.9870 -1.0316 10 8 5.8758 -2.1686 0.1627 11 7 6.8198 -2.1719 -1.8456 12 6 6.7529 -1.7820 -3.2606 13 6 7.9405 -0.8577 -3.5694 14 6 9.2416 -1.5584 -3.1717 15 6 10.4125 -0.6708 -3.5067 16 1 11.0820 -0.3423 -2.7256 17 6 10.6291 -0.2782 -4.8105 18 7 9.8142 -0.6787 -5.7620 19 14 12.0808 0.8215 -5.2260 20 1 13.2631 -0.0188 -5.5444 21 1 11.7426 1.6653 -6.4003 22 1 12.3908 1.6922 -4.0636 23 6 9.2311 -1.8425 -1.6679 24 6 8.0600 -2.7728 -1.3363 25 6 2.0852 -0.8062 -1.2006 26 1 -0.3634 -1.0268 0.0435 27 1 -0.3634 0.5511 0.8674 28 1 -0.3634 0.4757 -0.9109 29 1 2.1929 -0.1699 2.0793 30 1 1.4464 -1.6617 1.4227 31 1 4.2432 -0.5985 1.0589 32 1 3.6665 -2.2884 1.0389 33 1 6.8062 -2.6719 -3.8877 34 1 5.8183 -1.2543 -3.4504 35 1 7.8394 0.0694 -3.0052 36 1 7.9586 -0.6348 -4.6362 37 1 9.3298 -2.4975 -3.7181 38 1 9.9667 -0.4028 -6.6793 39 1 9.1178 -0.9061 -1.1216 40 1 10.1678 -2.3203 -1.3814 41 1 7.9881 -2.8989 -0.2560 42 1 8.2165 -3.7430 -1.8078 43 1 1.4522 -1.6702 -1.4027 44 1 2.1534 -0.1719 -2.0844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326796000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:19 Heat of formation + Delta-G solvation = -60.867014 kcal Electronic energy + Delta-G solvation = -24483.740910 eV Core-core repulsion = 21015.208168 eV Total energy + Delta-G solvation = -3468.532742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76268 -39.03235 -37.65800 -36.85419 -33.62850 -32.96453 -31.20542 -30.05851 -29.82105 -27.49756 -26.31094 -24.37294 -23.03703 -22.42520 -21.56997 -20.59766 -19.68320 -18.59184 -17.07776 -16.86527 -16.40138 -16.11851 -15.64200 -15.27625 -14.52493 -14.30329 -14.02373 -13.95016 -13.58912 -13.23474 -13.07280 -12.90640 -12.81370 -12.72888 -12.56210 -12.29409 -12.04699 -11.71197 -11.36720 -11.32299 -11.08480 -10.96595 -10.92430 -10.71511 -10.53935 -10.35497 -10.05607 -9.65681 -9.18783 -9.16066 -8.89856 -8.53034 -8.32193 -8.03947 -5.99173 -4.05822 1.66485 2.43437 3.30264 3.37294 3.40486 3.43854 3.63423 4.15632 4.35305 4.43406 4.51912 4.55771 5.02500 5.07333 5.13663 5.30307 5.33349 5.38075 5.51679 5.61414 5.64439 5.70361 5.79634 5.82663 5.87294 5.92691 5.98909 6.09743 6.10024 6.27663 6.45779 6.57528 6.68840 6.80849 7.01189 7.17174 7.22073 7.30483 7.68422 7.76675 7.89142 7.96477 8.09277 8.30311 8.43498 8.97464 9.58966 11.06195 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.003468 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.713094 B = 8071.150810 C = 8507.200549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.131 4.131 5 C 0.109 3.891 6 N -0.597 5.597 7 C 0.522 3.478 8 O -0.508 6.508 9 C 0.502 3.498 10 O -0.540 6.540 11 N -0.563 5.563 12 C 0.066 3.934 13 C -0.122 4.122 14 C 0.046 3.954 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.122 4.122 24 C 0.108 3.892 25 C 0.107 3.893 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.036 0.964 36 H 0.105 0.895 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 -0.850 11.484 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.014 4.014 6 N -0.331 5.331 7 C 0.307 3.693 8 O -0.384 6.384 9 C 0.284 3.716 10 O -0.419 6.419 11 N -0.294 5.294 12 C -0.055 4.055 13 C -0.160 4.160 14 C 0.028 3.972 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.160 4.160 24 C -0.013 4.013 25 C -0.015 4.015 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.207 -0.930 11.192 20.548 hybrid contribution 0.933 0.580 -0.374 1.160 sum -16.274 -0.350 10.818 19.545 Atomic orbital electron populations 1.21687 0.93523 1.02277 1.02269 1.22385 0.96301 0.99588 0.94405 0.89513 1.22822 0.95760 1.00282 0.98074 1.22200 0.97463 1.03018 0.78678 1.48340 1.11682 1.65258 1.07867 1.20132 0.84899 0.78288 0.86003 1.90557 1.81533 1.52284 1.14023 1.19779 0.85048 0.80203 0.86526 1.90674 1.84196 1.52615 1.14458 1.48199 1.11912 1.57251 1.12076 1.23182 1.04064 1.00420 0.77818 1.22100 0.93162 0.96205 1.04554 1.18678 0.93348 0.96372 0.88849 1.21189 1.10487 1.30354 0.93071 0.92735 1.24971 0.96349 0.96205 0.96490 1.69847 1.36919 1.45479 1.00636 0.86616 0.82904 0.80674 0.77924 1.20741 1.21253 1.20009 1.22002 0.95133 0.97939 1.00909 1.21874 0.83460 0.96473 0.99530 1.22401 0.82364 0.98589 0.98113 0.92260 0.92016 0.92145 0.89862 0.90438 0.90496 0.90202 0.92005 0.86102 0.94528 0.87688 0.95425 0.92960 0.92857 0.91915 0.90143 0.91570 0.90987 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.30 37.15 0.35 -0.45 16 2 C -0.11 -0.82 3.64 -88.47 -0.32 -1.14 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -0.99 6.42 -24.90 -0.16 -1.15 16 5 C 0.11 1.22 5.51 -2.92 -0.02 1.20 16 6 N -0.60 -8.03 3.33 -170.81 -0.57 -8.60 16 7 C 0.52 8.84 7.77 -11.59 -0.09 8.75 16 8 O -0.51 -9.49 13.43 5.49 0.07 -9.42 16 9 C 0.50 9.22 7.69 -11.59 -0.09 9.13 16 10 O -0.54 -10.07 13.63 5.50 0.07 -10.00 16 11 N -0.56 -10.87 2.97 -173.01 -0.51 -11.38 16 12 C 0.07 1.35 6.01 -3.48 -0.02 1.32 16 13 C -0.12 -2.88 5.17 -26.38 -0.14 -3.01 16 14 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 15 C -0.51 -13.94 8.56 -34.44 -0.29 -14.24 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.08 11.31 55.43 0.63 -24.46 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 24 C 0.11 2.00 6.44 -3.71 -0.02 1.98 16 25 C 0.11 1.12 6.37 -2.53 -0.02 1.10 16 26 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 31 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 32 H 0.08 0.95 7.57 -51.93 -0.39 0.55 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.12 2.48 4.30 -54.85 -0.24 2.25 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 2.76 6.03 -51.93 -0.31 2.44 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 44 H 0.08 0.91 8.03 -51.93 -0.42 0.50 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -29.99 343.39 -8.55 -38.54 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.15 Total: 0.61 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.25 Total: 3.34 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.46 Total: -44.44 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.15 Total: -19.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.99 -8.55 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326796000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.329 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds