Wall clock time and date at job start Tue Mar 31 2020 06:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.88794 * 2 1 4 4 C 1.55157 * 111.03948 * 123.90660 * 2 1 3 5 5 C 1.54317 * 102.94482 * 153.59232 * 4 2 1 6 6 N 1.47288 * 107.30839 * 337.81204 * 5 4 2 7 7 C 1.34769 * 125.79822 * 178.92180 * 6 5 4 8 8 O 1.21354 * 120.00537 * 180.02562 * 7 6 5 9 9 C 1.49451 * 119.99968 * 0.02562 * 7 6 5 10 10 O 1.21351 * 119.99854 * 6.74498 * 9 7 6 11 11 N 1.34775 * 120.00173 * 186.74881 * 9 7 6 12 12 C 1.46926 * 120.63173 * 8.41697 * 11 9 7 13 13 C 1.53627 * 108.54114 * 126.37063 * 12 11 9 14 14 C 1.53041 * 109.24054 * 54.86112 * 13 12 11 15 15 C 1.50694 * 109.45812 * 178.49096 * 14 13 12 16 16 H 1.07998 * 120.00600 * 120.06957 * 15 14 13 17 17 C 1.37877 * 120.00124 * 300.06582 * 15 14 13 18 18 N 1.31518 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00410 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47136 * 89.99886 * 19 17 15 21 21 H 1.48500 * 109.47233 * 209.99800 * 19 17 15 22 22 H 1.48503 * 109.46954 * 329.99949 * 19 17 15 23 23 C 1.53044 * 109.53752 * 298.50906 * 14 13 12 24 24 C 1.46929 * 120.63142 * 188.70468 * 11 9 7 25 25 C 1.47426 * 108.55621 * 358.92996 * 6 5 4 26 26 H 1.09006 * 109.47162 * 182.42546 * 1 2 3 27 27 H 1.09001 * 109.47546 * 302.42714 * 1 2 3 28 28 H 1.08999 * 109.47440 * 62.42434 * 1 2 3 29 29 H 1.09000 * 110.71796 * 271.95510 * 4 2 1 30 30 H 1.09005 * 110.72194 * 35.04777 * 4 2 1 31 31 H 1.08999 * 109.88628 * 97.22685 * 5 4 2 32 32 H 1.09001 * 109.88005 * 218.39332 * 5 4 2 33 33 H 1.08996 * 109.58644 * 246.20658 * 12 11 9 34 34 H 1.08995 * 109.58400 * 6.63049 * 12 11 9 35 35 H 1.08998 * 109.63621 * 294.86514 * 13 12 11 36 36 H 1.09002 * 109.42655 * 174.72788 * 13 12 11 37 37 H 1.09002 * 109.45108 * 58.52218 * 14 13 12 38 38 H 0.97000 * 120.00637 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.49608 * 301.41864 * 23 14 13 40 40 H 1.08994 * 109.49763 * 181.32387 * 23 14 13 41 41 H 1.09001 * 109.58301 * 353.36748 * 24 11 9 42 42 H 1.08996 * 109.59067 * 113.65036 * 24 11 9 43 43 H 1.08995 * 110.36820 * 265.25612 * 25 6 5 44 44 H 1.09000 * 110.37275 * 143.04482 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0870 -0.8078 1.2019 5 6 3.4683 -1.2732 0.6952 6 7 3.4284 -1.2420 -0.7768 7 6 4.4475 -1.5583 -1.6000 8 8 4.2983 -1.4950 -2.8026 9 6 5.7616 -1.9870 -1.0316 10 8 5.8758 -2.1686 0.1627 11 7 6.8198 -2.1719 -1.8456 12 6 6.7529 -1.7820 -3.2606 13 6 7.9405 -0.8577 -3.5694 14 6 9.2416 -1.5584 -3.1717 15 6 10.4125 -0.6708 -3.5067 16 1 11.0820 -0.3423 -2.7256 17 6 10.6291 -0.2782 -4.8105 18 7 9.8142 -0.6787 -5.7620 19 14 12.0808 0.8215 -5.2260 20 1 13.2631 -0.0188 -5.5444 21 1 11.7426 1.6653 -6.4003 22 1 12.3908 1.6922 -4.0636 23 6 9.2311 -1.8425 -1.6679 24 6 8.0600 -2.7728 -1.3363 25 6 2.0852 -0.8062 -1.2006 26 1 -0.3634 -1.0268 0.0435 27 1 -0.3634 0.5511 0.8674 28 1 -0.3634 0.4757 -0.9109 29 1 2.1929 -0.1699 2.0793 30 1 1.4464 -1.6617 1.4227 31 1 4.2432 -0.5985 1.0589 32 1 3.6665 -2.2884 1.0389 33 1 6.8062 -2.6719 -3.8877 34 1 5.8183 -1.2543 -3.4504 35 1 7.8394 0.0694 -3.0052 36 1 7.9586 -0.6348 -4.6362 37 1 9.3298 -2.4975 -3.7181 38 1 9.9667 -0.4028 -6.6793 39 1 9.1178 -0.9061 -1.1216 40 1 10.1678 -2.3203 -1.3814 41 1 7.9881 -2.8989 -0.2560 42 1 8.2165 -3.7430 -1.8078 43 1 1.4522 -1.6702 -1.4027 44 1 2.1534 -0.1719 -2.0844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326796000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:18 Heat of formation + Delta-G solvation = -78.395422 kcal Electronic energy + Delta-G solvation = -24484.500999 eV Core-core repulsion = 21015.208168 eV Total energy + Delta-G solvation = -3469.292831 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09296 -40.26326 -38.88379 -38.44165 -35.40772 -33.96093 -33.03809 -31.76609 -30.64921 -28.71869 -27.82773 -25.75858 -24.25461 -24.16519 -22.96230 -21.35205 -21.17417 -20.08359 -18.54640 -18.27536 -18.05735 -17.44128 -17.03453 -16.48593 -16.44717 -15.62204 -15.37367 -14.94868 -14.73233 -14.65532 -14.54549 -14.29095 -14.14080 -13.96528 -13.65318 -13.49231 -13.31189 -13.13565 -12.83399 -12.66297 -12.50301 -12.34380 -12.16534 -11.97822 -11.97331 -11.63051 -11.56879 -11.46313 -11.03090 -11.00421 -10.46284 -10.20828 -9.86101 -9.66004 -8.08214 -6.22504 0.27502 1.18798 1.41008 1.42267 1.51917 2.03765 2.33424 2.43421 3.04916 3.18093 3.56298 3.61950 3.91197 4.08253 4.25716 4.27291 4.29404 4.37065 4.47266 4.52778 4.57816 4.59032 4.71063 4.77709 4.83795 4.87374 4.93475 4.95379 5.04205 5.12838 5.14908 5.17399 5.22953 5.31835 5.36438 5.44431 5.48058 5.61655 5.94945 6.01090 6.08039 6.21935 6.36562 6.54011 6.86575 6.88380 7.45392 8.95464 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.003468 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.713094 B = 8071.150810 C = 8507.200549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.102 3.898 6 N -0.590 5.590 7 C 0.516 3.484 8 O -0.534 6.534 9 C 0.502 3.498 10 O -0.542 6.542 11 N -0.572 5.572 12 C 0.083 3.917 13 C -0.112 4.112 14 C 0.043 3.957 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.112 4.112 24 C 0.113 3.887 25 C 0.099 3.901 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.630 -0.602 13.175 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.020 4.020 6 N -0.323 5.323 7 C 0.300 3.700 8 O -0.413 6.413 9 C 0.285 3.715 10 O -0.421 6.421 11 N -0.304 5.304 12 C -0.039 4.039 13 C -0.150 4.150 14 C 0.025 3.975 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.150 4.150 24 C -0.008 4.008 25 C -0.022 4.022 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.598 -0.679 12.939 22.666 hybrid contribution 1.311 0.500 -0.834 1.632 sum -17.287 -0.179 12.105 21.105 Atomic orbital electron populations 1.21670 0.91570 1.03006 1.03034 1.22378 0.97692 0.98920 0.92792 0.89663 1.22827 0.93337 1.01138 0.98385 1.22389 0.99774 1.02627 0.77221 1.48506 1.11893 1.63084 1.08782 1.19875 0.85127 0.79013 0.86011 1.90525 1.81871 1.54032 1.14906 1.20076 0.85447 0.79601 0.86368 1.90663 1.84459 1.52493 1.14464 1.48181 1.12693 1.57934 1.11558 1.22889 1.02588 0.99609 0.78773 1.21872 0.94402 0.96337 1.02410 1.18644 0.92975 0.94786 0.91122 1.21547 1.11411 1.30960 0.93312 0.93050 1.25721 0.98828 0.97516 0.96473 1.69980 1.38228 1.46330 1.00829 0.85638 0.79878 0.78963 0.77649 1.20098 1.20961 1.19567 1.21845 0.96928 0.98265 0.97971 1.21850 0.82266 0.96232 1.00463 1.22709 0.80922 0.99396 0.99212 0.91613 0.90624 0.92005 0.87891 0.88765 0.91615 0.90759 0.92220 0.85743 0.95779 0.90548 0.97807 0.92963 0.93731 0.90838 0.88676 0.90330 0.89739 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.30 71.98 0.67 -0.42 16 2 C -0.10 -1.24 3.64 -9.40 -0.03 -1.28 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -1.42 6.42 31.78 0.20 -1.22 16 5 C 0.10 2.11 5.51 86.68 0.48 2.59 16 6 N -0.59 -15.27 3.33 -812.70 -2.71 -17.98 16 7 C 0.52 17.34 7.77 87.27 0.68 18.02 16 8 O -0.53 -20.13 13.43 -3.26 -0.04 -20.17 16 9 C 0.50 18.20 7.69 87.27 0.67 18.87 16 10 O -0.54 -19.64 13.63 -3.25 -0.04 -19.68 16 11 N -0.57 -22.01 2.97 -819.65 -2.43 -24.44 16 12 C 0.08 3.46 6.01 86.51 0.52 3.98 16 13 C -0.11 -5.45 5.17 30.82 0.16 -5.29 16 14 C 0.04 2.17 2.06 -11.51 -0.02 2.15 16 15 C -0.53 -29.54 8.56 25.60 0.22 -29.32 16 16 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 17 C 0.01 0.74 5.30 84.65 0.45 1.19 16 18 N -0.91 -52.68 11.31 21.45 0.24 -52.44 16 19 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.11 -4.65 5.30 30.67 0.16 -4.49 16 24 C 0.11 4.10 6.44 86.36 0.56 4.66 16 25 C 0.10 1.90 6.37 86.86 0.55 2.45 16 26 H 0.06 0.47 8.11 -2.38 -0.02 0.45 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.87 8.01 -2.38 -0.02 0.85 16 31 H 0.07 1.52 7.75 -2.39 -0.02 1.51 16 32 H 0.07 1.64 7.57 -2.39 -0.02 1.63 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.13 5.24 4.30 -48.56 -0.21 5.03 16 35 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 4.18 6.03 -2.39 -0.01 4.17 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.09 3.19 7.01 -2.39 -0.02 3.17 16 42 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.08 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.07 1.55 8.03 -2.39 -0.02 1.54 16 Total: -1.00 -65.07 343.39 3.08 -61.99 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.78 Total: 14.97 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.26 Total: 11.88 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -4.90 Total: -94.86 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.09 Total: -39.85 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.07 3.08 -61.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326796000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.409 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds