Wall clock time and date at job start Tue Mar 31 2020 06:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88243 * 2 1 4 4 C 1.55160 * 111.00324 * 123.91531 * 2 1 3 5 5 C 1.54318 * 102.93967 * 153.57719 * 4 2 1 6 6 N 1.47018 * 107.27457 * 337.80976 * 5 4 2 7 7 C 1.34782 * 125.65134 * 179.20769 * 6 5 4 8 8 O 1.21349 * 119.99856 * 179.69205 * 7 6 5 9 9 C 1.49447 * 119.99837 * 359.68730 * 7 6 5 10 10 O 1.21351 * 119.99877 * 6.75185 * 9 7 6 11 11 N 1.34775 * 120.00100 * 186.75310 * 9 7 6 12 12 C 1.46923 * 120.62793 * 8.42296 * 11 9 7 13 13 C 1.53625 * 108.54018 * 126.37207 * 12 11 9 14 14 C 1.53036 * 109.24422 * 54.85506 * 13 12 11 15 15 C 1.53042 * 109.54059 * 298.51130 * 14 13 12 16 16 H 1.08996 * 109.49347 * 301.41320 * 15 14 13 17 17 C 1.50693 * 109.52737 * 181.33292 * 15 14 13 18 18 H 1.08010 * 120.00099 * 0.14362 * 17 15 14 19 19 C 1.37874 * 120.00072 * 180.14811 * 17 15 14 20 20 N 1.31516 * 120.00194 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 120.00054 * 359.97438 * 19 17 15 22 22 H 1.48500 * 109.46707 * 90.00430 * 21 19 17 23 23 H 1.48499 * 109.47114 * 210.00324 * 21 19 17 24 24 H 1.48500 * 109.47135 * 330.00416 * 21 19 17 25 25 C 1.46930 * 120.63064 * 188.70440 * 11 9 7 26 26 C 1.47425 * 108.70386 * 358.94003 * 6 5 4 27 27 H 1.08999 * 109.47258 * 182.42969 * 1 2 3 28 28 H 1.09005 * 109.47665 * 302.43387 * 1 2 3 29 29 H 1.08999 * 109.47196 * 62.42745 * 1 2 3 30 30 H 1.08997 * 110.72002 * 271.94358 * 4 2 1 31 31 H 1.09001 * 110.71866 * 35.21777 * 4 2 1 32 32 H 1.09004 * 109.88543 * 218.39120 * 5 4 2 33 33 H 1.09006 * 109.88269 * 97.23076 * 5 4 2 34 34 H 1.09004 * 109.58356 * 246.20084 * 12 11 9 35 35 H 1.08992 * 109.59022 * 6.62836 * 12 11 9 36 36 H 1.08993 * 109.63514 * 294.85835 * 13 12 11 37 37 H 1.09010 * 109.45596 * 174.73993 * 13 12 11 38 38 H 1.08999 * 109.46489 * 178.48769 * 14 13 12 39 39 H 1.09012 * 109.45173 * 58.52572 * 14 13 12 40 40 H 0.97000 * 120.00144 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.58760 * 353.37419 * 25 11 9 42 42 H 1.09003 * 109.58239 * 113.65232 * 25 11 9 43 43 H 1.09003 * 110.37023 * 142.96475 * 26 6 5 44 44 H 1.08995 * 110.36925 * 265.18254 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0861 -0.8082 1.2021 5 6 3.4673 -1.2743 0.6957 6 7 3.4271 -1.2428 -0.7736 7 6 4.4463 -1.5653 -1.5944 8 8 4.2980 -1.5077 -2.7974 9 6 5.7591 -1.9936 -1.0230 10 8 5.8722 -2.1693 0.1724 11 7 6.8175 -2.1845 -1.8353 12 6 6.7523 -1.8016 -3.2522 13 6 7.9419 -0.8812 -3.5647 14 6 9.2415 -1.5823 -3.1626 15 6 9.2293 -1.8589 -1.6575 16 1 9.1175 -0.9196 -1.1160 17 6 10.5229 -2.5197 -1.2563 18 1 11.2800 -2.7206 -2.0000 19 6 10.7398 -2.8681 0.0599 20 7 11.8689 -3.4444 0.4101 21 14 9.4307 -2.5201 1.3462 22 1 8.5151 -3.6849 1.4482 23 1 10.0791 -2.2835 2.6610 24 1 8.6571 -1.3154 0.9518 25 6 8.0563 -2.7852 -1.3220 26 6 2.0853 -0.8062 -1.2005 27 1 -0.3634 -1.0267 0.0436 28 1 -0.3634 0.5512 0.8674 29 1 -0.3633 0.4757 -0.9109 30 1 2.1920 -0.1705 2.0796 31 1 1.4467 -1.6636 1.4205 32 1 3.6650 -2.2896 1.0395 33 1 4.2425 -0.6000 1.0599 34 1 6.8045 -2.6948 -3.8748 35 1 5.8189 -1.2730 -3.4454 36 1 7.8422 0.0489 -3.0053 37 1 7.9615 -0.6631 -4.6326 38 1 10.0898 -0.9433 -3.4076 39 1 9.3283 -2.5244 -3.7043 40 1 12.0214 -3.6898 1.3361 41 1 7.9834 -2.9058 -0.2412 42 1 8.2112 -3.7581 -1.7886 43 1 2.1560 -0.1713 -2.0837 44 1 1.4525 -1.6699 -1.4047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327663291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:24 Heat of formation + Delta-G solvation = -53.501100 kcal Electronic energy + Delta-G solvation = -24917.364488 eV Core-core repulsion = 21449.151156 eV Total energy + Delta-G solvation = -3468.213332 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85537 -39.13633 -37.74209 -37.03493 -33.53679 -32.99808 -31.91001 -30.51311 -29.89798 -27.54893 -25.64603 -25.15463 -23.55926 -21.97941 -21.93416 -20.64799 -19.63384 -18.78830 -17.21081 -16.93417 -16.77015 -16.27356 -15.82593 -15.37573 -14.43595 -14.30484 -14.03460 -13.97919 -13.79968 -13.61149 -13.27209 -13.07090 -13.02103 -12.77514 -12.61002 -12.53742 -12.14365 -12.08850 -11.68929 -11.35721 -11.11063 -11.07782 -10.99327 -10.77137 -10.52448 -10.31360 -10.07484 -9.76196 -9.43584 -9.14787 -8.98362 -8.70883 -8.62290 -8.12936 -6.11808 -4.13321 1.59810 2.38328 3.34618 3.38135 3.42784 3.54368 3.58097 4.10303 4.31081 4.40410 4.46695 4.48720 4.99993 5.02818 5.09398 5.19918 5.26068 5.34335 5.40879 5.47187 5.49717 5.57605 5.65276 5.69341 5.77295 5.79571 5.91451 5.98910 6.05277 6.11784 6.14272 6.28674 6.45251 6.49908 6.61282 6.75337 6.81150 7.12082 7.13668 7.42147 7.58524 7.70243 7.83790 8.25900 8.48073 8.91706 9.49448 11.00151 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004731 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.025971 B = 5917.224558 C = 6983.434752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.131 4.131 5 C 0.105 3.895 6 N -0.594 5.594 7 C 0.524 3.476 8 O -0.517 6.517 9 C 0.498 3.502 10 O -0.527 6.527 11 N -0.571 5.571 12 C 0.072 3.928 13 C -0.136 4.136 14 C -0.102 4.102 15 C 0.006 3.994 16 H 0.031 0.969 17 C -0.515 4.515 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.879 3.121 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.261 1.261 25 C 0.099 3.901 26 C 0.108 3.892 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.265 0.735 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.150 6.590 -2.224 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.018 4.018 6 N -0.328 5.328 7 C 0.309 3.691 8 O -0.394 6.394 9 C 0.279 3.721 10 O -0.404 6.404 11 N -0.303 5.303 12 C -0.050 4.050 13 C -0.174 4.174 14 C -0.140 4.140 15 C -0.013 4.013 16 H 0.049 0.951 17 C -0.553 4.553 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.709 3.291 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.186 1.186 25 C -0.021 4.021 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.147 0.853 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.956 6.410 -2.134 22.972 hybrid contribution -0.472 -0.040 0.839 0.964 sum -22.428 6.370 -1.295 23.351 Atomic orbital electron populations 1.21689 0.93475 1.02328 1.02260 1.22386 0.96336 0.99543 0.94396 0.89517 1.22830 0.95669 1.00306 0.98102 1.22218 0.97632 1.03349 0.78554 1.48309 1.11778 1.64679 1.08024 1.20231 0.84917 0.77970 0.85964 1.90481 1.81752 1.53167 1.14035 1.19847 0.84955 0.80469 0.86817 1.90730 1.83839 1.51489 1.14356 1.48350 1.13044 1.58051 1.10891 1.22861 1.02304 0.99850 0.79982 1.22074 0.95999 0.98757 1.00554 1.21473 0.95253 0.99627 0.97655 1.19477 0.93226 0.95433 0.93207 0.95070 1.20966 0.99919 1.39770 0.94682 0.90355 1.25059 0.95331 0.94217 0.98466 1.69892 1.24275 1.40931 1.18194 0.86981 0.81039 0.80317 0.80756 1.20086 1.22253 1.18606 1.22807 0.81632 0.97692 0.99956 1.22414 0.82354 0.98594 0.98054 0.92226 0.91964 0.92179 0.89748 0.90363 0.89998 0.90336 0.91583 0.85349 0.92300 0.91521 0.92224 0.92466 0.92497 0.90286 0.90904 0.90015 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.30 37.16 0.35 -0.42 16 2 C -0.11 -0.80 3.64 -88.47 -0.32 -1.13 16 3 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.05 6.42 -24.90 -0.16 -1.21 16 5 C 0.10 1.26 5.49 -3.07 -0.02 1.25 16 6 N -0.59 -7.98 3.33 -171.03 -0.57 -8.55 16 7 C 0.52 8.66 7.77 -11.58 -0.09 8.57 16 8 O -0.52 -8.77 13.44 5.50 0.07 -8.70 16 9 C 0.50 9.69 7.69 -11.59 -0.09 9.60 16 10 O -0.53 -11.31 13.61 5.50 0.07 -11.23 16 11 N -0.57 -11.39 2.97 -173.01 -0.51 -11.90 16 12 C 0.07 1.21 6.01 -3.49 -0.02 1.19 16 13 C -0.14 -2.23 6.10 -26.39 -0.16 -2.39 16 14 C -0.10 -2.01 5.11 -26.69 -0.14 -2.15 16 15 C 0.01 0.14 1.84 -91.66 -0.17 -0.02 16 16 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 17 C -0.52 -14.37 9.15 -34.44 -0.32 -14.69 16 18 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 19 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 20 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 21 Si 0.88 23.02 24.32 -169.99 -4.13 18.89 16 22 H -0.27 -7.17 6.92 56.52 0.39 -6.78 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.26 -6.84 6.53 56.52 0.37 -6.47 16 25 C 0.10 2.26 5.12 -3.71 -0.02 2.24 16 26 C 0.11 1.07 6.37 -2.53 -0.02 1.05 16 27 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.55 8.01 -51.93 -0.42 0.14 16 32 H 0.08 1.08 7.56 -51.93 -0.39 0.69 16 33 H 0.08 1.05 7.74 -51.93 -0.40 0.64 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.13 2.12 4.30 -54.85 -0.24 1.88 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 1.98 2.32 -51.93 -0.12 1.86 16 42 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 44 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -32.37 336.66 -7.51 -39.87 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.02 Total: -0.69 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.27 Total: 3.90 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.31 Total: -47.11 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.15 Total: -19.93 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.13 Total: 18.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.37 -7.51 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327663291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.627 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds