Wall clock time and date at job start Tue Mar 31 2020 06:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88243 * 2 1 4 4 C 1.55160 * 111.00324 * 123.91531 * 2 1 3 5 5 C 1.54318 * 102.93967 * 153.57719 * 4 2 1 6 6 N 1.47018 * 107.27457 * 337.80976 * 5 4 2 7 7 C 1.34782 * 125.65134 * 179.20769 * 6 5 4 8 8 O 1.21349 * 119.99856 * 179.69205 * 7 6 5 9 9 C 1.49447 * 119.99837 * 359.68730 * 7 6 5 10 10 O 1.21351 * 119.99877 * 6.75185 * 9 7 6 11 11 N 1.34775 * 120.00100 * 186.75310 * 9 7 6 12 12 C 1.46923 * 120.62793 * 8.42296 * 11 9 7 13 13 C 1.53625 * 108.54018 * 126.37207 * 12 11 9 14 14 C 1.53036 * 109.24422 * 54.85506 * 13 12 11 15 15 C 1.53042 * 109.54059 * 298.51130 * 14 13 12 16 16 H 1.08996 * 109.49347 * 301.41320 * 15 14 13 17 17 C 1.50693 * 109.52737 * 181.33292 * 15 14 13 18 18 H 1.08010 * 120.00099 * 0.14362 * 17 15 14 19 19 C 1.37874 * 120.00072 * 180.14811 * 17 15 14 20 20 N 1.31516 * 120.00194 * 180.02562 * 19 17 15 21 21 Si 1.86802 * 120.00054 * 359.97438 * 19 17 15 22 22 H 1.48500 * 109.46707 * 90.00430 * 21 19 17 23 23 H 1.48499 * 109.47114 * 210.00324 * 21 19 17 24 24 H 1.48500 * 109.47135 * 330.00416 * 21 19 17 25 25 C 1.46930 * 120.63064 * 188.70440 * 11 9 7 26 26 C 1.47425 * 108.70386 * 358.94003 * 6 5 4 27 27 H 1.08999 * 109.47258 * 182.42969 * 1 2 3 28 28 H 1.09005 * 109.47665 * 302.43387 * 1 2 3 29 29 H 1.08999 * 109.47196 * 62.42745 * 1 2 3 30 30 H 1.08997 * 110.72002 * 271.94358 * 4 2 1 31 31 H 1.09001 * 110.71866 * 35.21777 * 4 2 1 32 32 H 1.09004 * 109.88543 * 218.39120 * 5 4 2 33 33 H 1.09006 * 109.88269 * 97.23076 * 5 4 2 34 34 H 1.09004 * 109.58356 * 246.20084 * 12 11 9 35 35 H 1.08992 * 109.59022 * 6.62836 * 12 11 9 36 36 H 1.08993 * 109.63514 * 294.85835 * 13 12 11 37 37 H 1.09010 * 109.45596 * 174.73993 * 13 12 11 38 38 H 1.08999 * 109.46489 * 178.48769 * 14 13 12 39 39 H 1.09012 * 109.45173 * 58.52572 * 14 13 12 40 40 H 0.97000 * 120.00144 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.58760 * 353.37419 * 25 11 9 42 42 H 1.09003 * 109.58239 * 113.65232 * 25 11 9 43 43 H 1.09003 * 110.37023 * 142.96475 * 26 6 5 44 44 H 1.08995 * 110.36925 * 265.18254 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0861 -0.8082 1.2021 5 6 3.4673 -1.2743 0.6957 6 7 3.4271 -1.2428 -0.7736 7 6 4.4463 -1.5653 -1.5944 8 8 4.2980 -1.5077 -2.7974 9 6 5.7591 -1.9936 -1.0230 10 8 5.8722 -2.1693 0.1724 11 7 6.8175 -2.1845 -1.8353 12 6 6.7523 -1.8016 -3.2522 13 6 7.9419 -0.8812 -3.5647 14 6 9.2415 -1.5823 -3.1626 15 6 9.2293 -1.8589 -1.6575 16 1 9.1175 -0.9196 -1.1160 17 6 10.5229 -2.5197 -1.2563 18 1 11.2800 -2.7206 -2.0000 19 6 10.7398 -2.8681 0.0599 20 7 11.8689 -3.4444 0.4101 21 14 9.4307 -2.5201 1.3462 22 1 8.5151 -3.6849 1.4482 23 1 10.0791 -2.2835 2.6610 24 1 8.6571 -1.3154 0.9518 25 6 8.0563 -2.7852 -1.3220 26 6 2.0853 -0.8062 -1.2005 27 1 -0.3634 -1.0267 0.0436 28 1 -0.3634 0.5512 0.8674 29 1 -0.3633 0.4757 -0.9109 30 1 2.1920 -0.1705 2.0796 31 1 1.4467 -1.6636 1.4205 32 1 3.6650 -2.2896 1.0395 33 1 4.2425 -0.6000 1.0599 34 1 6.8045 -2.6948 -3.8748 35 1 5.8189 -1.2730 -3.4454 36 1 7.8422 0.0489 -3.0053 37 1 7.9615 -0.6631 -4.6326 38 1 10.0898 -0.9433 -3.4076 39 1 9.3283 -2.5244 -3.7043 40 1 12.0214 -3.6898 1.3361 41 1 7.9834 -2.9058 -0.2412 42 1 8.2112 -3.7581 -1.7886 43 1 2.1560 -0.1713 -2.0837 44 1 1.4525 -1.6699 -1.4047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327663291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:23 Heat of formation + Delta-G solvation = -75.093242 kcal Electronic energy + Delta-G solvation = -24918.300793 eV Core-core repulsion = 21449.151156 eV Total energy + Delta-G solvation = -3469.149637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17890 -40.37716 -38.93465 -38.57014 -35.33868 -34.08674 -33.58451 -32.29539 -30.70639 -28.59084 -27.18390 -26.80032 -24.63203 -23.63606 -23.19087 -21.35712 -21.16684 -20.20005 -18.97402 -18.35305 -18.32630 -17.51120 -17.18081 -16.54258 -16.31717 -15.87048 -15.43461 -15.23807 -14.97677 -14.88540 -14.64784 -14.38001 -14.21236 -14.15131 -13.75384 -13.65432 -13.49283 -13.23954 -13.06419 -12.70301 -12.49442 -12.36093 -12.15949 -12.03993 -11.79164 -11.64256 -11.61789 -11.53975 -11.29892 -11.10408 -10.83229 -10.30480 -9.93818 -9.71648 -8.40271 -6.43237 0.21279 1.11672 1.22459 1.28864 1.40440 1.97241 2.19544 2.28520 2.95196 3.00130 3.52901 3.57136 3.88114 3.92510 4.09433 4.12365 4.21492 4.33652 4.36647 4.43571 4.52538 4.56643 4.57657 4.69572 4.72112 4.81095 4.85576 4.91301 4.92650 4.99706 5.02731 5.11883 5.15113 5.18819 5.29282 5.29671 5.45021 5.46547 5.56743 5.62277 5.93941 6.15539 6.22774 6.49773 6.65547 6.80794 7.22316 8.75653 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.004731 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.025971 B = 5917.224558 C = 6983.434752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.120 4.120 5 C 0.098 3.902 6 N -0.588 5.588 7 C 0.527 3.473 8 O -0.524 6.524 9 C 0.489 3.511 10 O -0.553 6.553 11 N -0.578 5.578 12 C 0.071 3.929 13 C -0.126 4.126 14 C -0.099 4.099 15 C 0.006 3.994 16 H 0.016 0.984 17 C -0.513 4.513 18 H 0.051 0.949 19 C 0.027 3.973 20 N -0.937 5.937 21 Si 0.937 3.063 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.265 1.265 25 C 0.106 3.894 26 C 0.101 3.899 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.055 0.945 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.268 0.732 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.411 7.785 -2.877 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.158 4.158 5 C -0.024 4.024 6 N -0.321 5.321 7 C 0.310 3.690 8 O -0.403 6.403 9 C 0.272 3.728 10 O -0.433 6.433 11 N -0.310 5.310 12 C -0.049 4.049 13 C -0.164 4.164 14 C -0.137 4.137 15 C -0.013 4.013 16 H 0.034 0.966 17 C -0.551 4.551 18 H 0.070 0.930 19 C -0.171 4.171 20 N -0.576 5.576 21 Si 0.766 3.234 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.190 1.190 25 C -0.016 4.016 26 C -0.019 4.019 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.261 7.628 -2.796 26.536 hybrid contribution 0.542 -0.411 1.015 1.222 sum -24.719 7.218 -1.781 25.813 Atomic orbital electron populations 1.21670 0.91461 1.02962 1.03168 1.22383 0.97753 0.98964 0.92560 0.89364 1.22832 0.93068 1.01172 0.98713 1.22327 0.99933 1.02259 0.77870 1.48436 1.12267 1.62863 1.08488 1.19549 0.84463 0.78914 0.86072 1.90459 1.81717 1.54140 1.13987 1.20480 0.86036 0.79747 0.86503 1.90707 1.84524 1.52443 1.15588 1.48375 1.12232 1.58128 1.12233 1.23082 1.02935 1.00606 0.78256 1.22031 0.93602 0.97897 1.02846 1.21413 0.97393 1.00348 0.94516 1.19403 0.91584 0.94272 0.96081 0.96567 1.21267 1.01142 1.38769 0.93948 0.93050 1.25665 0.96716 0.94467 1.00297 1.69989 1.25988 1.42852 1.18809 0.86060 0.78753 0.79748 0.78852 1.20346 1.21843 1.18993 1.22355 0.82973 0.97598 0.98631 1.22741 0.80452 0.99470 0.99259 0.91765 0.90831 0.91533 0.88133 0.88921 0.91534 0.92030 0.90296 0.84309 0.92608 0.87688 0.92213 0.92100 0.92258 0.92598 0.90908 0.89937 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.30 71.98 0.67 -0.30 16 2 C -0.10 -1.15 3.64 -9.40 -0.03 -1.18 16 3 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 4 C -0.12 -1.59 6.42 31.78 0.20 -1.38 16 5 C 0.10 2.27 5.49 86.73 0.48 2.74 16 6 N -0.59 -14.89 3.33 -813.38 -2.71 -17.60 16 7 C 0.53 16.73 7.77 87.27 0.68 17.41 16 8 O -0.52 -16.75 13.44 -3.24 -0.04 -16.79 16 9 C 0.49 18.87 7.69 87.27 0.67 19.54 16 10 O -0.55 -23.95 13.61 -3.25 -0.04 -23.99 16 11 N -0.58 -22.60 2.97 -819.65 -2.43 -25.04 16 12 C 0.07 2.25 6.01 86.51 0.52 2.77 16 13 C -0.13 -3.82 6.10 30.82 0.19 -3.63 16 14 C -0.10 -3.78 5.11 30.62 0.16 -3.62 16 15 C 0.01 0.29 1.84 -11.46 -0.02 0.27 16 16 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 17 C -0.51 -29.28 9.15 25.60 0.23 -29.05 16 18 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 19 C 0.03 1.63 5.45 84.65 0.46 2.09 16 20 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 21 Si 0.94 49.12 24.32 68.60 1.67 50.78 16 22 H -0.28 -14.48 6.92 99.48 0.69 -13.79 16 23 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 24 H -0.26 -13.87 6.53 99.48 0.65 -13.22 16 25 C 0.11 4.85 5.12 86.36 0.44 5.29 16 26 C 0.10 1.74 6.37 86.85 0.55 2.30 16 27 H 0.06 0.43 8.11 -2.39 -0.02 0.41 16 28 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.00 8.01 -2.39 -0.02 0.98 16 32 H 0.07 1.74 7.56 -2.39 -0.02 1.72 16 33 H 0.06 1.63 7.74 -2.38 -0.02 1.61 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.14 4.23 4.30 -48.51 -0.21 4.02 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.06 2.83 2.32 -2.39 -0.01 2.82 16 42 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.08 1.44 8.04 -2.39 -0.02 1.43 16 44 H 0.09 1.30 8.04 -2.39 -0.02 1.28 16 Total: -1.00 -71.44 336.66 2.65 -68.78 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.71 Total: 9.12 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.20 Total: 13.25 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.84 Total: -101.16 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.09 Total: -40.78 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.67 Total: 50.78 kcal Total: -71.44 2.65 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327663291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.309 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds