Wall clock time and date at job start Tue Mar 31 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.91329 * 2 1 4 4 C 1.55158 * 111.00229 * 236.10694 * 2 1 3 5 5 C 1.54325 * 102.94123 * 206.42087 * 4 2 1 6 6 N 1.47024 * 107.27118 * 22.19254 * 5 4 2 7 7 C 1.34770 * 125.64941 * 181.02368 * 6 5 4 8 8 O 1.21349 * 120.00110 * 180.02562 * 7 6 5 9 9 C 1.49454 * 120.00173 * 0.02562 * 7 6 5 10 10 O 1.21347 * 119.99440 * 353.38567 * 9 7 6 11 11 N 1.34775 * 119.99903 * 173.39234 * 9 7 6 12 12 C 1.46919 * 120.63353 * 353.08829 * 11 9 7 13 13 C 1.53193 * 108.76469 * 126.40879 * 12 11 9 14 14 C 1.53038 * 109.31165 * 54.65815 * 13 12 11 15 15 C 1.53044 * 109.52447 * 298.61048 * 14 13 12 16 16 H 1.08997 * 109.49731 * 301.39184 * 15 14 13 17 17 C 1.50702 * 109.49612 * 181.32712 * 15 14 13 18 18 H 1.07997 * 119.99959 * 359.97438 * 17 15 14 19 19 C 1.37869 * 119.99928 * 180.02562 * 17 15 14 20 20 N 1.31518 * 120.00359 * 180.02562 * 19 17 15 21 21 Si 1.86801 * 120.00270 * 359.97438 * 19 17 15 22 22 H 1.48500 * 109.46998 * 90.00109 * 21 19 17 23 23 H 1.48496 * 109.47636 * 210.00586 * 21 19 17 24 24 H 1.48500 * 109.47022 * 330.00550 * 21 19 17 25 25 C 1.46927 * 120.62817 * 173.11489 * 11 9 7 26 26 C 1.47424 * 108.70227 * 1.28540 * 6 5 4 27 27 H 1.09003 * 109.46945 * 183.89446 * 1 2 3 28 28 H 1.08999 * 109.46739 * 303.89355 * 1 2 3 29 29 H 1.08995 * 109.47150 * 63.89716 * 1 2 3 30 30 H 1.08999 * 110.72415 * 88.05740 * 4 2 1 31 31 H 1.08999 * 110.72029 * 324.78292 * 4 2 1 32 32 H 1.09003 * 109.88252 * 262.77528 * 5 4 2 33 33 H 1.09000 * 110.00935 * 141.68087 * 5 4 2 34 34 H 1.09004 * 109.58727 * 246.19900 * 12 11 9 35 35 H 1.08998 * 109.58628 * 6.48627 * 12 11 9 36 36 H 1.08999 * 109.50717 * 294.69346 * 13 12 11 37 37 H 1.09004 * 109.48537 * 174.59891 * 13 12 11 38 38 H 1.09004 * 109.45814 * 178.60147 * 14 13 12 39 39 H 1.08996 * 109.46384 * 58.63053 * 14 13 12 40 40 H 0.96996 * 120.00414 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.58929 * 113.79652 * 25 11 9 42 42 H 1.09001 * 109.70137 * 353.44005 * 25 11 9 43 43 H 1.09001 * 110.36897 * 94.48210 * 26 6 5 44 44 H 1.09006 * 110.37043 * 216.80969 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8078 -1.2024 5 6 3.4675 -1.2740 -0.6963 6 7 3.4272 -1.2431 0.7731 7 6 4.4477 -1.5617 1.5937 8 8 4.3009 -1.5002 2.7967 9 6 5.7603 -1.9907 1.0221 10 8 5.8726 -2.1681 -0.1731 11 7 6.8191 -2.1806 1.8341 12 6 6.7435 -1.8264 3.2580 13 6 7.1482 -3.0465 4.0914 14 6 8.5258 -3.5350 3.6377 15 6 8.4609 -3.9547 2.1674 16 1 7.7167 -4.7417 2.0462 17 6 9.8095 -4.4661 1.7304 18 1 10.6312 -4.4892 2.4309 19 6 9.9946 -4.9035 0.4361 20 7 11.1713 -5.3503 0.0548 21 14 8.5736 -4.8629 -0.7758 22 1 8.5629 -3.5567 -1.4823 23 1 8.7345 -5.9592 -1.7644 24 1 7.2937 -5.0402 -0.0440 25 6 8.0711 -2.7451 1.3120 26 6 2.0837 -0.8120 1.2002 27 1 -0.3633 -1.0253 0.0698 28 1 -0.3633 0.5731 0.8530 29 1 -0.3633 0.4521 -0.9228 30 1 2.1921 -0.1697 -2.0797 31 1 1.4468 -1.6630 -1.4212 32 1 4.2426 -0.5995 -1.0602 33 1 3.6677 -2.2887 -1.0404 34 1 7.4235 -1.0001 3.4656 35 1 5.7241 -1.5325 3.5078 36 1 6.4159 -3.8417 3.9518 37 1 7.1891 -2.7698 5.1449 38 1 8.8270 -4.3879 4.2459 39 1 9.2526 -2.7312 3.7543 40 1 11.3014 -5.6583 -0.8557 41 1 8.8592 -1.9937 1.3609 42 1 7.9294 -3.0593 0.2779 43 1 1.4525 -1.6783 1.3985 44 1 2.1516 -0.1803 2.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327663293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:29 Heat of formation + Delta-G solvation = -49.974926 kcal Electronic energy + Delta-G solvation = -24920.123289 eV Core-core repulsion = 21452.062863 eV Total energy + Delta-G solvation = -3468.060426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88119 -39.13394 -37.77005 -37.04264 -33.54296 -32.99721 -31.90062 -30.51029 -29.90442 -27.55970 -25.64747 -25.15055 -23.56671 -21.97805 -21.93645 -20.66347 -19.64626 -18.76011 -17.31463 -16.94121 -16.69339 -16.23630 -15.85073 -15.41953 -14.47239 -14.27987 -14.09405 -14.01111 -13.77127 -13.63400 -13.31836 -13.09576 -12.93257 -12.84540 -12.66708 -12.43001 -12.12550 -12.10971 -11.67856 -11.36114 -11.11549 -11.07909 -10.99329 -10.80943 -10.49886 -10.27362 -10.05743 -9.76953 -9.44866 -9.14846 -8.94772 -8.66171 -8.61535 -8.13313 -6.12376 -4.13515 1.58221 2.37399 3.33391 3.38912 3.41020 3.50187 3.57782 4.09226 4.29797 4.39188 4.45684 4.48066 4.98532 5.01665 5.08960 5.19627 5.25075 5.33974 5.43375 5.48832 5.53859 5.56635 5.65335 5.70551 5.76781 5.78603 5.90311 5.98750 6.05558 6.13790 6.17033 6.34345 6.47202 6.52097 6.62600 6.77145 6.83692 7.12141 7.14467 7.42590 7.61948 7.70612 7.84966 8.25537 8.47997 8.91503 9.49013 10.99792 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.004701 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.450673 B = 5954.838993 C = 7022.405833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.131 4.131 5 C 0.105 3.895 6 N -0.593 5.593 7 C 0.526 3.474 8 O -0.513 6.513 9 C 0.497 3.503 10 O -0.528 6.528 11 N -0.569 5.569 12 C 0.051 3.949 13 C -0.130 4.130 14 C -0.103 4.103 15 C 0.005 3.995 16 H 0.031 0.969 17 C -0.514 4.514 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.878 3.122 22 H -0.271 1.271 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.100 3.900 26 C 0.107 3.893 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.147 0.853 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.499 11.583 0.998 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.018 4.018 6 N -0.327 5.327 7 C 0.311 3.689 8 O -0.391 6.391 9 C 0.279 3.721 10 O -0.406 6.406 11 N -0.301 5.301 12 C -0.070 4.070 13 C -0.168 4.168 14 C -0.141 4.141 15 C -0.014 4.014 16 H 0.049 0.951 17 C -0.553 4.553 18 H 0.097 0.903 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.708 3.292 22 H -0.198 1.198 23 H -0.221 1.221 24 H -0.191 1.191 25 C -0.021 4.021 26 C -0.015 4.015 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.299 11.414 0.901 23.305 hybrid contribution -0.438 -0.094 -0.830 0.943 sum -20.737 11.320 0.071 23.626 Atomic orbital electron populations 1.21693 0.93481 1.02364 1.02257 1.22424 0.96346 0.99457 0.94388 0.89506 1.22828 0.95669 1.00352 0.98079 1.22224 0.97618 1.03405 0.78518 1.48323 1.11645 1.64664 1.08038 1.20275 0.84946 0.77749 0.85926 1.90312 1.81399 1.53405 1.14006 1.19798 0.84909 0.80585 0.86819 1.90724 1.83832 1.51602 1.14470 1.48352 1.12622 1.58816 1.10266 1.23149 1.07629 0.97400 0.78849 1.21899 0.98836 0.97594 0.98511 1.21483 0.94638 1.00332 0.97607 1.19498 0.97994 0.92193 0.91748 0.95136 1.20970 0.95077 1.41783 0.97420 0.90320 1.25048 0.95415 0.94320 0.98228 1.69887 1.22359 1.42477 1.18540 0.86998 0.83260 0.77567 0.81379 1.19779 1.22137 1.19086 1.22800 0.82016 0.97496 0.99740 1.22485 0.82292 0.98629 0.98083 0.92197 0.92190 0.91951 0.89748 0.90338 0.90339 0.89971 0.92154 0.83725 0.92218 0.91645 0.92249 0.92542 0.92479 0.90934 0.90379 0.90812 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.31 37.16 0.35 -0.41 16 2 C -0.11 -0.78 3.65 -88.35 -0.32 -1.10 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -1.03 6.42 -24.89 -0.16 -1.19 16 5 C 0.10 1.25 5.50 -3.06 -0.02 1.23 16 6 N -0.59 -7.93 3.32 -170.88 -0.57 -8.50 16 7 C 0.53 8.70 7.81 -11.59 -0.09 8.61 16 8 O -0.51 -8.72 13.36 5.50 0.07 -8.65 16 9 C 0.50 9.72 7.70 -11.58 -0.09 9.63 16 10 O -0.53 -11.32 13.62 5.50 0.07 -11.24 16 11 N -0.57 -11.42 2.97 -173.28 -0.51 -11.93 16 12 C 0.05 0.86 6.27 -3.71 -0.02 0.84 16 13 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 14 C -0.10 -2.05 5.11 -26.69 -0.14 -2.18 16 15 C 0.01 0.12 1.84 -91.65 -0.17 -0.04 16 16 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 17 C -0.51 -14.41 9.14 -34.44 -0.31 -14.73 16 18 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 19 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 20 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 21 Si 0.88 23.03 24.33 -169.99 -4.14 18.89 16 22 H -0.27 -7.11 6.92 56.52 0.39 -6.72 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 24 H -0.27 -6.97 6.53 56.52 0.37 -6.60 16 25 C 0.10 2.29 5.09 -3.71 -0.02 2.27 16 26 C 0.11 1.05 6.38 -2.41 -0.02 1.04 16 27 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 32 H 0.08 1.00 7.74 -51.93 -0.40 0.59 16 33 H 0.08 1.10 7.55 -51.93 -0.39 0.71 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.15 2.41 3.78 -56.76 -0.21 2.20 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.08 1.97 2.39 -51.93 -0.12 1.84 16 43 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 44 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -32.41 336.35 -7.50 -39.91 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.00 Total: -0.50 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.27 Total: 3.62 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.31 Total: -47.10 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.15 Total: -19.89 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.14 Total: 18.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.41 -7.50 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327663293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.068 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds