Wall clock time and date at job start Tue Mar 31 2020 06:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.91329 * 2 1 4 4 C 1.55158 * 111.00229 * 236.10694 * 2 1 3 5 5 C 1.54325 * 102.94123 * 206.42087 * 4 2 1 6 6 N 1.47024 * 107.27118 * 22.19254 * 5 4 2 7 7 C 1.34770 * 125.64941 * 181.02368 * 6 5 4 8 8 O 1.21349 * 120.00110 * 180.02562 * 7 6 5 9 9 C 1.49454 * 120.00173 * 0.02562 * 7 6 5 10 10 O 1.21347 * 119.99440 * 353.38567 * 9 7 6 11 11 N 1.34775 * 119.99903 * 173.39234 * 9 7 6 12 12 C 1.46919 * 120.63353 * 353.08829 * 11 9 7 13 13 C 1.53193 * 108.76469 * 126.40879 * 12 11 9 14 14 C 1.53038 * 109.31165 * 54.65815 * 13 12 11 15 15 C 1.53044 * 109.52447 * 298.61048 * 14 13 12 16 16 H 1.08997 * 109.49731 * 301.39184 * 15 14 13 17 17 C 1.50702 * 109.49612 * 181.32712 * 15 14 13 18 18 H 1.07997 * 119.99959 * 359.97438 * 17 15 14 19 19 C 1.37869 * 119.99928 * 180.02562 * 17 15 14 20 20 N 1.31518 * 120.00359 * 180.02562 * 19 17 15 21 21 Si 1.86801 * 120.00270 * 359.97438 * 19 17 15 22 22 H 1.48500 * 109.46998 * 90.00109 * 21 19 17 23 23 H 1.48496 * 109.47636 * 210.00586 * 21 19 17 24 24 H 1.48500 * 109.47022 * 330.00550 * 21 19 17 25 25 C 1.46927 * 120.62817 * 173.11489 * 11 9 7 26 26 C 1.47424 * 108.70227 * 1.28540 * 6 5 4 27 27 H 1.09003 * 109.46945 * 183.89446 * 1 2 3 28 28 H 1.08999 * 109.46739 * 303.89355 * 1 2 3 29 29 H 1.08995 * 109.47150 * 63.89716 * 1 2 3 30 30 H 1.08999 * 110.72415 * 88.05740 * 4 2 1 31 31 H 1.08999 * 110.72029 * 324.78292 * 4 2 1 32 32 H 1.09003 * 109.88252 * 262.77528 * 5 4 2 33 33 H 1.09000 * 110.00935 * 141.68087 * 5 4 2 34 34 H 1.09004 * 109.58727 * 246.19900 * 12 11 9 35 35 H 1.08998 * 109.58628 * 6.48627 * 12 11 9 36 36 H 1.08999 * 109.50717 * 294.69346 * 13 12 11 37 37 H 1.09004 * 109.48537 * 174.59891 * 13 12 11 38 38 H 1.09004 * 109.45814 * 178.60147 * 14 13 12 39 39 H 1.08996 * 109.46384 * 58.63053 * 14 13 12 40 40 H 0.96996 * 120.00414 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.58929 * 113.79652 * 25 11 9 42 42 H 1.09001 * 109.70137 * 353.44005 * 25 11 9 43 43 H 1.09001 * 110.36897 * 94.48210 * 26 6 5 44 44 H 1.09006 * 110.37043 * 216.80969 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8078 -1.2024 5 6 3.4675 -1.2740 -0.6963 6 7 3.4272 -1.2431 0.7731 7 6 4.4477 -1.5617 1.5937 8 8 4.3009 -1.5002 2.7967 9 6 5.7603 -1.9907 1.0221 10 8 5.8726 -2.1681 -0.1731 11 7 6.8191 -2.1806 1.8341 12 6 6.7435 -1.8264 3.2580 13 6 7.1482 -3.0465 4.0914 14 6 8.5258 -3.5350 3.6377 15 6 8.4609 -3.9547 2.1674 16 1 7.7167 -4.7417 2.0462 17 6 9.8095 -4.4661 1.7304 18 1 10.6312 -4.4892 2.4309 19 6 9.9946 -4.9035 0.4361 20 7 11.1713 -5.3503 0.0548 21 14 8.5736 -4.8629 -0.7758 22 1 8.5629 -3.5567 -1.4823 23 1 8.7345 -5.9592 -1.7644 24 1 7.2937 -5.0402 -0.0440 25 6 8.0711 -2.7451 1.3120 26 6 2.0837 -0.8120 1.2002 27 1 -0.3633 -1.0253 0.0698 28 1 -0.3633 0.5731 0.8530 29 1 -0.3633 0.4521 -0.9228 30 1 2.1921 -0.1697 -2.0797 31 1 1.4468 -1.6630 -1.4212 32 1 4.2426 -0.5995 -1.0602 33 1 3.6677 -2.2887 -1.0404 34 1 7.4235 -1.0001 3.4656 35 1 5.7241 -1.5325 3.5078 36 1 6.4159 -3.8417 3.9518 37 1 7.1891 -2.7698 5.1449 38 1 8.8270 -4.3879 4.2459 39 1 9.2526 -2.7312 3.7543 40 1 11.3014 -5.6583 -0.8557 41 1 8.8592 -1.9937 1.3609 42 1 7.9294 -3.0593 0.2779 43 1 1.4525 -1.6783 1.3985 44 1 2.1516 -0.1803 2.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327663293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:28 Heat of formation + Delta-G solvation = -71.687799 kcal Electronic energy + Delta-G solvation = -24921.064830 eV Core-core repulsion = 21452.062863 eV Total energy + Delta-G solvation = -3469.001966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.20542 -40.37301 -38.97629 -38.57472 -35.34289 -34.08853 -33.58870 -32.30253 -30.70612 -28.60209 -27.18913 -26.80124 -24.63720 -23.63018 -23.22553 -21.36315 -21.14636 -20.21969 -19.00499 -18.39172 -18.31758 -17.42790 -17.21137 -16.58493 -16.37704 -15.86994 -15.51068 -15.23067 -14.97242 -14.84457 -14.66184 -14.47361 -14.28363 -14.07201 -13.74746 -13.63051 -13.46971 -13.25805 -13.05666 -12.71231 -12.54282 -12.36771 -12.15672 -12.04347 -11.77663 -11.65505 -11.61885 -11.51578 -11.31448 -11.11505 -10.83915 -10.17532 -9.95504 -9.72932 -8.41242 -6.44044 0.19506 1.11114 1.21121 1.27267 1.35523 1.97324 2.18091 2.28125 2.93691 2.98976 3.52143 3.57100 3.88720 3.93233 4.10499 4.14308 4.21417 4.33598 4.36168 4.45288 4.52013 4.56969 4.57616 4.68780 4.71831 4.81984 4.85232 4.91009 4.91625 5.01287 5.04189 5.12118 5.15524 5.21148 5.29953 5.31117 5.45122 5.46921 5.55981 5.61725 5.93019 6.18694 6.22147 6.51046 6.64709 6.79918 7.21318 8.74876 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022017 B = 0.004701 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.450673 B = 5954.838993 C = 7022.405833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.091 0.909 4 C -0.120 4.120 5 C 0.098 3.902 6 N -0.586 5.586 7 C 0.527 3.473 8 O -0.520 6.520 9 C 0.489 3.511 10 O -0.554 6.554 11 N -0.576 5.576 12 C 0.050 3.950 13 C -0.121 4.121 14 C -0.099 4.099 15 C 0.005 3.995 16 H 0.015 0.985 17 C -0.513 4.513 18 H 0.052 0.948 19 C 0.028 3.972 20 N -0.936 5.936 21 Si 0.935 3.065 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.270 1.270 25 C 0.107 3.893 26 C 0.100 3.900 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.601 13.195 1.493 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.110 0.890 4 C -0.158 4.158 5 C -0.024 4.024 6 N -0.319 5.319 7 C 0.311 3.689 8 O -0.400 6.400 9 C 0.272 3.728 10 O -0.433 6.433 11 N -0.307 5.307 12 C -0.070 4.070 13 C -0.159 4.159 14 C -0.137 4.137 15 C -0.014 4.014 16 H 0.033 0.967 17 C -0.551 4.551 18 H 0.070 0.930 19 C -0.171 4.171 20 N -0.576 5.576 21 Si 0.764 3.236 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.195 1.195 25 C -0.015 4.015 26 C -0.021 4.021 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.173 0.827 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.446 13.045 1.403 26.868 hybrid contribution 0.526 -0.580 -0.962 1.241 sum -22.920 12.465 0.441 26.094 Atomic orbital electron populations 1.21677 0.91574 1.02843 1.03251 1.22421 0.97670 0.98993 0.92423 0.89045 1.22831 0.93020 1.01162 0.98809 1.22344 1.00098 1.02204 0.77773 1.48448 1.12109 1.62774 1.08536 1.19586 0.84523 0.78732 0.86053 1.90284 1.81358 1.54387 1.13968 1.20438 0.85959 0.79894 0.86540 1.90701 1.84480 1.52509 1.15654 1.48380 1.11821 1.58878 1.11655 1.23384 1.08806 0.97871 0.76918 1.21856 0.96234 0.97245 1.00585 1.21423 0.97010 1.00577 0.94672 1.19421 0.95011 0.92206 0.94795 0.96722 1.21261 0.96230 1.40924 0.96703 0.93005 1.25651 0.97069 0.94478 0.99867 1.69983 1.24041 1.44307 1.19227 0.86085 0.80586 0.77354 0.79577 1.19993 1.21601 1.19494 1.22341 0.83773 0.97171 0.98212 1.22819 0.80343 0.99466 0.99432 0.91963 0.91484 0.90756 0.87904 0.89189 0.91491 0.91924 0.90470 0.82699 0.92933 0.87872 0.92296 0.92071 0.92210 0.90949 0.92690 0.89844 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.31 71.98 0.67 -0.28 16 2 C -0.10 -1.08 3.65 -9.32 -0.03 -1.12 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 4 C -0.12 -1.55 6.42 31.78 0.20 -1.35 16 5 C 0.10 2.22 5.50 86.73 0.48 2.70 16 6 N -0.59 -14.77 3.32 -812.92 -2.70 -17.47 16 7 C 0.53 16.80 7.81 87.27 0.68 17.48 16 8 O -0.52 -16.67 13.36 -3.24 -0.04 -16.71 16 9 C 0.49 18.91 7.70 87.27 0.67 19.59 16 10 O -0.55 -23.90 13.62 -3.24 -0.04 -23.95 16 11 N -0.58 -22.68 2.97 -820.49 -2.44 -25.12 16 12 C 0.05 1.59 6.27 86.36 0.54 2.13 16 13 C -0.12 -3.81 6.08 30.67 0.19 -3.62 16 14 C -0.10 -3.85 5.11 30.62 0.16 -3.69 16 15 C 0.01 0.25 1.84 -11.46 -0.02 0.23 16 16 H 0.01 0.75 7.20 -2.39 -0.02 0.73 16 17 C -0.51 -29.41 9.14 25.60 0.23 -29.18 16 18 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 19 C 0.03 1.68 5.45 84.65 0.46 2.15 16 20 N -0.94 -58.81 13.96 21.44 0.30 -58.51 16 21 Si 0.94 49.06 24.33 68.60 1.67 50.73 16 22 H -0.27 -14.30 6.92 99.48 0.69 -13.61 16 23 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.27 -14.14 6.53 99.48 0.65 -13.49 16 25 C 0.11 4.92 5.09 86.36 0.44 5.36 16 26 C 0.10 1.71 6.38 86.93 0.55 2.26 16 27 H 0.06 0.43 8.07 -2.39 -0.02 0.41 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.00 8.04 -2.39 -0.02 0.98 16 32 H 0.07 1.67 7.74 -2.39 -0.02 1.65 16 33 H 0.06 1.67 7.55 -2.39 -0.02 1.65 16 34 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.16 4.78 3.78 -78.81 -0.30 4.48 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.06 2.80 2.39 -2.39 -0.01 2.79 16 43 H 0.08 1.31 7.99 -2.39 -0.02 1.29 16 44 H 0.08 1.44 8.04 -2.38 -0.02 1.43 16 Total: -1.00 -71.52 336.35 2.58 -68.93 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.62 Total: 9.45 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.22 Total: 12.65 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.84 Total: -101.10 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.09 Total: -40.66 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.67 Total: 50.73 kcal Total: -71.52 2.58 -68.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327663293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.753 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds