Wall clock time and date at job start Tue Mar 31 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58667 * 2 1 4 4 C 1.53194 * 109.70471 * 239.64200 * 2 1 3 5 5 C 1.53040 * 109.31418 * 185.51002 * 4 2 1 6 6 C 1.53044 * 109.53675 * 61.36672 * 5 4 2 7 7 C 1.53626 * 109.24041 * 298.51153 * 6 5 4 8 8 N 1.46927 * 108.54492 * 54.85778 * 7 6 5 9 9 C 1.34771 * 120.63112 * 126.36769 * 8 7 6 10 10 O 1.21348 * 120.00320 * 187.79343 * 9 8 7 11 11 C 1.49456 * 119.99688 * 7.79675 * 9 8 7 12 12 O 1.21341 * 120.00137 * 6.92479 * 11 9 8 13 13 N 1.34776 * 119.99553 * 186.91981 * 11 9 8 14 14 C 1.46504 * 120.00098 * 184.90351 * 13 11 9 15 15 C 1.52998 * 109.47280 * 184.75299 * 14 13 11 16 16 C 1.50700 * 115.55102 * 303.30709 * 15 14 13 17 17 H 1.08004 * 119.99841 * 99.26306 * 16 15 14 18 18 C 1.37873 * 120.00447 * 278.99071 * 16 15 14 19 19 N 1.31522 * 119.99825 * 355.33944 * 18 16 15 20 20 Si 1.86794 * 120.00288 * 175.34145 * 18 16 15 21 21 H 1.48498 * 109.47194 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47045 * 119.99815 * 20 18 16 23 23 H 1.48499 * 109.47277 * 239.99732 * 20 18 16 24 24 C 1.53001 * 117.51770 * 89.01443 * 15 14 13 25 25 C 1.53003 * 60.00117 * 107.47771 * 24 15 14 26 26 H 1.09002 * 109.47573 * 302.71473 * 1 2 3 27 27 H 1.08999 * 109.47140 * 62.71248 * 1 2 3 28 28 H 1.08994 * 109.47383 * 182.71005 * 1 2 3 29 29 H 1.09004 * 109.49746 * 305.46017 * 4 2 1 30 30 H 1.09004 * 109.49665 * 65.55835 * 4 2 1 31 31 H 1.08995 * 109.45673 * 181.38509 * 5 4 2 32 32 H 1.09001 * 109.45723 * 301.34794 * 5 4 2 33 33 H 1.08991 * 109.49649 * 58.58741 * 6 5 4 34 34 H 1.09000 * 109.49606 * 178.68893 * 6 5 4 35 35 H 1.09009 * 109.73649 * 295.11790 * 7 6 5 36 36 H 1.08997 * 109.66436 * 174.55634 * 7 6 5 37 37 H 0.96999 * 120.00136 * 4.90895 * 13 11 9 38 38 H 1.09004 * 109.46435 * 64.75137 * 14 13 11 39 39 H 1.08999 * 109.46887 * 304.75772 * 14 13 11 40 40 H 0.96999 * 119.99865 * 185.00462 * 19 18 16 41 41 H 1.08997 * 117.50065 * 214.97319 * 24 15 14 42 42 H 1.09004 * 117.49923 * 359.97438 * 24 15 14 43 43 H 1.09001 * 117.49693 * 252.51059 * 25 24 15 44 44 H 1.09000 * 117.49586 * 107.48494 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8444 -1.1673 6 6 3.9601 -1.6609 0.0671 7 6 3.4659 -0.9376 1.3291 8 7 2.0224 -0.6981 1.1954 9 6 1.1670 -1.1060 2.1536 10 8 -0.0302 -1.0311 1.9702 11 6 1.6930 -1.6506 3.4422 12 8 2.8826 -1.6098 3.6776 13 7 0.8458 -2.1868 4.3429 14 6 1.3451 -2.6224 5.6495 15 6 0.2142 -3.2965 6.4289 16 6 -1.0223 -2.4599 6.6341 17 1 -1.8805 -2.5983 5.9931 18 6 -1.0602 -1.5217 7.6438 19 7 -0.0543 -1.4198 8.4848 20 14 -2.5404 -0.3955 7.8172 21 1 -3.5290 -0.7101 6.7547 22 1 -3.1643 -0.5996 9.1492 23 1 -2.1048 1.0181 7.6860 24 6 0.0246 -4.8027 6.2387 25 6 0.6061 -4.2642 7.5474 26 1 -0.3634 0.5554 0.8646 27 1 -0.3633 0.4711 -0.9133 28 1 -0.3634 -1.0264 0.0486 29 1 1.6080 -1.7258 -1.2905 30 1 1.7689 -0.1673 -2.1365 31 1 3.9429 -1.3409 -2.0634 32 1 4.0071 0.1518 -1.0964 33 1 3.5036 -2.6489 0.0087 34 1 5.0446 -1.7625 0.1087 35 1 3.9860 0.0145 1.4353 36 1 3.6537 -1.5585 2.2050 37 1 -0.0946 -2.2843 4.1260 38 1 1.7059 -1.7581 6.2071 39 1 2.1617 -3.3305 5.5086 40 1 -0.1114 -0.8111 9.2378 41 1 -0.9945 -5.1886 6.2619 42 1 0.7054 -5.3137 5.5578 43 1 1.6697 -4.4208 7.7276 44 1 -0.0305 -4.2956 8.4316 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327740777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:05 Heat of formation + Delta-G solvation = -45.508091 kcal Electronic energy + Delta-G solvation = -24619.604274 eV Core-core repulsion = 21151.737545 eV Total energy + Delta-G solvation = -3467.866729 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12686 -40.12351 -38.57095 -38.44916 -35.21249 -34.00989 -33.72730 -33.62068 -29.08243 -28.25419 -27.38513 -25.89729 -24.60877 -23.03318 -22.76613 -21.64803 -21.38925 -20.41780 -18.64778 -18.06018 -17.60265 -17.13156 -16.70781 -16.66459 -16.28702 -15.81240 -15.73895 -15.10376 -15.06148 -14.98174 -14.47396 -14.41920 -14.01967 -13.70871 -13.59016 -13.53195 -13.24036 -12.95247 -12.88124 -12.76735 -12.36504 -12.21223 -12.05909 -12.01731 -11.84463 -11.57955 -11.39865 -11.15673 -10.96666 -10.48232 -10.29449 -9.92758 -9.80649 -9.64941 -8.12453 -6.25343 0.39133 1.36475 1.38228 1.43469 1.52283 2.15547 2.40348 2.55941 3.15482 3.35147 3.55933 3.80871 3.84705 3.97880 4.10232 4.19858 4.28925 4.35036 4.49926 4.50740 4.64071 4.66551 4.73133 4.79401 4.88819 4.93643 5.00397 5.02227 5.02733 5.09000 5.15801 5.22209 5.26999 5.28208 5.44426 5.46267 5.52750 5.64350 5.69577 5.76732 6.06350 6.34465 6.38410 6.79667 6.83188 7.03208 7.44648 8.94664 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.004243 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.919459 B = 6596.799052 C = 7346.411466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.133 3.867 3 H 0.088 0.912 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.062 3.938 8 N -0.575 5.575 9 C 0.506 3.494 10 O -0.532 6.532 11 C 0.491 3.509 12 O -0.544 6.544 13 N -0.666 5.666 14 C 0.175 3.825 15 C -0.002 4.002 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.031 3.969 19 N -0.902 5.902 20 Si 0.943 3.057 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.288 1.288 24 C -0.181 4.181 25 C -0.149 4.149 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.414 0.586 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.260 0.740 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 0.971 -18.875 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.106 0.894 4 C -0.162 4.162 5 C -0.155 4.155 6 C -0.168 4.168 7 C -0.058 4.058 8 N -0.309 5.309 9 C 0.289 3.711 10 O -0.410 6.410 11 C 0.273 3.727 12 O -0.425 6.425 13 N -0.315 5.315 14 C 0.051 3.949 15 C -0.003 4.003 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.170 4.170 19 N -0.540 5.540 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.214 1.214 24 C -0.218 4.218 25 C -0.188 4.188 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.251 0.749 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.239 1.197 -18.666 20.057 hybrid contribution -1.201 0.687 0.818 1.607 sum 6.038 1.884 -17.849 18.937 Atomic orbital electron populations 1.22121 0.93271 1.02670 1.01089 1.21680 0.95387 0.95989 0.83823 0.89407 1.21987 0.96680 1.00913 0.96663 1.21558 0.94849 1.01068 0.98049 1.21998 1.02104 0.98765 0.93917 1.23038 0.77631 1.02875 1.02293 1.48139 1.08544 1.55211 1.18983 1.20059 0.86474 0.79800 0.84800 1.90815 1.15858 1.54871 1.79466 1.20566 0.86465 0.79590 0.86083 1.90419 1.15581 1.58455 1.78077 1.45838 1.13000 1.57917 1.14756 1.20789 0.95471 0.97632 0.80976 1.19079 0.94953 0.88004 0.98257 1.20654 0.98999 1.18576 1.16119 0.92450 1.25593 0.97950 0.97800 0.95664 1.70083 1.31775 1.37810 1.14294 0.85737 0.80406 0.78891 0.78040 1.19116 1.20602 1.21415 1.23019 1.01006 0.97690 1.00079 1.22417 0.98697 1.05314 0.92341 0.93549 0.91044 0.92657 0.92387 0.88354 0.89945 0.90753 0.92586 0.88911 0.90631 0.86014 0.74940 0.94128 0.92398 0.93092 0.89969 0.89125 0.90540 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 7.60 71.98 0.55 -2.72 16 2 C 0.13 2.83 3.48 44.97 0.16 2.99 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -1.94 5.38 30.67 0.16 -1.77 16 5 C -0.12 -1.57 5.88 30.62 0.18 -1.39 16 6 C -0.13 -2.23 6.10 30.82 0.19 -2.04 16 7 C 0.06 1.48 6.03 86.51 0.52 2.00 16 8 N -0.58 -15.58 2.97 -795.74 -2.36 -17.94 16 9 C 0.51 17.32 7.65 87.27 0.67 17.99 16 10 O -0.53 -19.79 11.93 -3.24 -0.04 -19.82 16 11 C 0.49 18.76 7.74 87.27 0.68 19.44 16 12 O -0.54 -21.49 13.15 -3.22 -0.04 -21.53 16 13 N -0.67 -27.25 5.40 -464.41 -2.51 -29.76 16 14 C 0.17 7.78 5.57 86.38 0.48 8.26 16 15 C 0.00 -0.10 1.52 -52.93 -0.08 -0.18 16 16 C -0.51 -26.22 8.16 25.60 0.21 -26.01 16 17 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 18 C 0.03 1.66 5.44 84.65 0.46 2.12 16 19 N -0.90 -50.34 12.84 21.45 0.28 -50.06 16 20 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 C -0.18 -7.23 9.93 30.60 0.30 -6.93 16 25 C -0.15 -6.66 9.41 30.60 0.29 -6.37 16 26 H 0.05 1.37 6.77 -2.39 -0.02 1.35 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.57 6.73 -2.39 -0.02 1.55 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.12 3.57 4.27 -51.40 -0.22 3.35 16 37 H 0.41 17.07 7.54 -92.71 -0.70 16.37 16 38 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 40 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 41 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.92 350.56 2.20 -57.72 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.08 Total: 30.89 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.76 Total: 5.38 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.59 Total: -97.77 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.08 Total: -41.35 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -59.92 2.20 -57.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327740777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.208 kcal (2) G-P(sol) polarization free energy of solvation -59.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds