Wall clock time and date at job start Tue Mar 31 2020 07:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47350 * 2 1 4 4 C 1.46495 * 119.99983 * 259.94312 * 3 2 1 5 5 C 1.52998 * 109.47390 * 270.00316 * 4 3 2 6 6 C 1.52999 * 117.49464 * 243.62203 * 5 4 3 7 7 C 1.53005 * 117.49414 * 175.00116 * 5 4 3 8 8 C 1.34783 * 119.99650 * 79.94909 * 3 2 1 9 9 O 1.21347 * 119.99440 * 180.35227 * 8 3 2 10 10 C 1.49440 * 120.00146 * 0.35230 * 8 3 2 11 11 O 1.21354 * 120.00496 * 4.33558 * 10 8 3 12 12 N 1.34779 * 119.99950 * 184.33749 * 10 8 3 13 13 C 1.46501 * 120.00005 * 185.04214 * 12 10 8 14 14 C 1.52998 * 109.47197 * 184.83727 * 13 12 10 15 15 C 1.50701 * 115.55086 * 305.58266 * 14 13 12 16 16 H 1.08004 * 119.99942 * 95.30901 * 15 14 13 17 17 C 1.37874 * 120.00150 * 275.02951 * 15 14 13 18 18 N 1.31512 * 119.99676 * 355.38274 * 17 15 14 19 19 Si 1.86804 * 120.00107 * 175.38220 * 17 15 14 20 20 H 1.48495 * 109.46976 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47021 * 120.00002 * 19 17 15 22 22 H 1.48499 * 109.46998 * 240.00139 * 19 17 15 23 23 C 1.53008 * 117.49791 * 91.24981 * 14 13 12 24 24 C 1.53001 * 117.50297 * 159.90877 * 14 13 12 25 25 H 1.09010 * 109.46810 * 299.99850 * 1 2 3 26 26 H 1.08996 * 109.47193 * 59.99691 * 1 2 3 27 27 H 1.09003 * 109.47369 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47094 * 239.99572 * 2 1 3 29 29 H 1.09003 * 109.46870 * 120.00505 * 2 1 3 30 30 H 1.09005 * 109.47182 * 30.00530 * 4 3 2 31 31 H 1.09005 * 109.47095 * 150.00154 * 4 3 2 32 32 H 1.08997 * 115.55103 * 29.32863 * 5 4 3 33 33 H 1.08994 * 117.50562 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49906 * 145.02392 * 6 5 4 35 35 H 1.09000 * 117.49354 * 214.97814 * 7 5 4 36 36 H 1.08998 * 117.50301 * 0.02562 * 7 5 4 37 37 H 0.96998 * 120.00365 * 5.04380 * 12 10 8 38 38 H 1.08996 * 109.46850 * 64.84285 * 13 12 10 39 39 H 1.08990 * 109.47460 * 304.83877 * 13 12 10 40 40 H 0.97008 * 119.99795 * 184.99828 * 18 17 15 41 41 H 1.08993 * 117.49861 * 215.00818 * 23 14 13 42 42 H 1.09000 * 117.49574 * 0.02562 * 23 14 13 43 43 H 1.09002 * 117.49365 * 359.97438 * 24 14 13 44 44 H 1.08992 * 117.50009 * 144.97524 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4714 1.9979 -1.2492 5 6 3.9682 1.7391 -1.4323 6 6 4.8994 2.9530 -1.4381 7 6 4.6106 2.2042 -2.7407 8 6 2.0510 2.0844 1.1494 9 8 2.4495 3.2306 1.1482 10 6 1.5963 1.4526 2.4251 11 8 1.2723 0.2832 2.4413 12 7 1.5461 2.1815 3.5576 13 6 1.2072 1.5373 4.8290 14 6 1.1014 2.5983 5.9262 15 6 2.3071 3.4879 6.0885 16 1 2.3395 4.4486 5.5962 17 6 3.3662 3.0777 6.8701 18 7 3.2873 1.9526 7.5464 19 14 4.9132 4.1201 6.9684 20 1 4.7509 5.3280 6.1199 21 1 5.1446 4.5311 8.3765 22 1 6.0742 3.3296 6.4863 23 6 -0.2739 3.2197 6.1779 24 6 0.3175 2.2337 7.1885 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9230 1.5670 -2.0869 31 1 2.2905 3.0721 -1.2106 32 1 4.3440 0.8181 -0.9865 33 1 4.4459 3.9359 -1.3110 34 1 5.8882 2.8309 -0.9960 35 1 5.4094 1.5894 -3.1555 36 1 3.9671 2.6949 -3.4708 37 1 1.7343 3.1327 3.5310 38 1 1.9846 0.8198 5.0912 39 1 0.2530 1.0197 4.7310 40 1 4.0015 1.6998 8.1523 41 1 -0.3067 4.2717 6.4608 42 1 -1.1035 2.8722 5.5621 43 1 -0.1233 1.2380 7.2370 44 1 0.6740 2.6368 8.1363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327747276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:54 Heat of formation + Delta-G solvation = -14.587719 kcal Electronic energy + Delta-G solvation = -24276.064755 eV Core-core repulsion = 20809.538834 eV Total energy + Delta-G solvation = -3466.525921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52112 -38.43371 -37.29467 -36.79440 -35.67478 -33.26016 -31.98750 -30.68481 -27.98939 -26.59851 -25.37723 -23.74218 -22.58143 -22.32617 -21.16740 -20.63670 -19.70287 -18.99500 -17.36663 -16.98368 -16.10836 -15.80158 -15.59152 -14.94367 -14.84014 -14.54583 -14.49916 -14.01073 -13.75236 -13.41705 -13.09359 -12.92619 -12.68276 -12.41517 -12.00921 -11.92820 -11.71393 -11.63132 -11.60994 -11.15786 -11.00196 -10.93915 -10.74108 -10.58590 -10.50670 -10.23990 -10.09873 -9.58261 -9.07888 -8.99088 -8.69593 -8.54367 -8.38484 -8.11229 -6.09984 -4.19753 1.84699 2.64128 3.25607 3.35021 3.39252 3.63150 3.63642 3.93297 4.35506 4.58197 4.75048 4.84309 4.90677 5.06521 5.18192 5.20901 5.31680 5.33406 5.40108 5.47731 5.55146 5.59738 5.77489 5.82612 5.96640 5.98746 6.05078 6.13809 6.26130 6.28766 6.41744 6.47510 6.52169 6.68527 6.77957 7.06242 7.08491 7.20258 7.31190 7.49685 7.80255 7.85490 8.22350 8.30654 8.59276 8.82978 9.48546 10.97030 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.004567 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.430256 B = 6129.891375 C = 7411.734710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.588 5.588 4 C 0.145 3.855 5 C -0.172 4.172 6 C -0.170 4.170 7 C -0.177 4.177 8 C 0.507 3.493 9 O -0.517 6.517 10 C 0.494 3.506 11 O -0.534 6.534 12 N -0.663 5.663 13 C 0.160 3.840 14 C 0.021 3.979 15 C -0.501 4.501 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.210 4.210 24 C -0.140 4.140 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.415 0.585 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.261 0.739 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -2.700 -16.897 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.022 3.978 5 C -0.191 4.191 6 C -0.207 4.207 7 C -0.215 4.215 8 C 0.290 3.710 9 O -0.391 6.391 10 C 0.274 3.726 11 O -0.414 6.414 12 N -0.313 5.313 13 C 0.038 3.962 14 C 0.020 3.980 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.129 4.129 18 N -0.511 5.511 19 Si 0.716 3.284 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.248 4.248 24 C -0.178 4.178 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.072 -3.054 -16.755 17.157 hybrid contribution 1.058 0.824 0.177 1.352 sum -1.014 -2.230 -16.578 16.758 Atomic orbital electron populations 1.22088 0.95658 1.02230 1.01723 1.22078 0.94992 0.81195 1.04385 1.47827 1.62612 1.14852 1.06956 1.21093 0.91860 0.99574 0.85256 1.22737 0.94745 0.99777 1.01866 1.23009 1.00722 0.96683 1.00257 1.22939 1.03315 1.04246 0.90969 1.20499 0.79189 0.86078 0.85208 1.90739 1.45279 1.17189 1.85927 1.19916 0.80553 0.86978 0.85147 1.90612 1.49019 1.16150 1.85654 1.45897 1.64989 1.13710 1.06686 1.21122 0.98746 0.95477 0.80895 1.19032 0.90088 0.95788 0.93060 1.20406 0.99309 1.02661 1.31474 0.91937 1.24974 0.98167 0.94689 0.95078 1.69998 1.33258 1.21923 1.25881 0.86581 0.83380 0.80575 0.77825 1.19498 1.20995 1.20935 1.23063 0.97920 0.98273 1.05502 1.22463 1.03201 0.96727 0.95459 0.91855 0.93559 0.91643 0.91228 0.86858 0.89946 0.89570 0.87640 0.88339 0.88965 0.88853 0.88769 0.74828 0.91023 0.93446 0.92917 0.90276 0.91662 0.91766 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.63 37.16 0.36 -1.48 16 2 C 0.10 1.15 5.74 -4.04 -0.02 1.12 16 3 N -0.59 -8.01 2.51 -174.20 -0.44 -8.45 16 4 C 0.14 1.62 5.65 -4.05 -0.02 1.59 16 5 C -0.17 -1.86 6.01 -90.62 -0.54 -2.41 16 6 C -0.17 -1.87 10.18 -26.73 -0.27 -2.14 16 7 C -0.18 -1.54 10.25 -26.73 -0.27 -1.81 16 8 C 0.51 8.71 7.64 -11.59 -0.09 8.62 16 9 O -0.52 -9.89 16.07 5.50 0.09 -9.80 16 10 C 0.49 9.31 7.35 -11.59 -0.09 9.22 16 11 O -0.53 -10.24 11.74 5.49 0.06 -10.17 16 12 N -0.66 -13.48 5.40 -60.74 -0.33 -13.81 16 13 C 0.16 3.52 5.60 -4.04 -0.02 3.50 16 14 C 0.02 0.49 1.62 -155.66 -0.25 0.24 16 15 C -0.50 -12.93 8.07 -34.44 -0.28 -13.20 16 16 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 17 C 0.08 1.99 5.43 -17.82 -0.10 1.89 16 18 N -0.87 -23.96 12.65 55.43 0.70 -23.26 16 19 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.21 -4.39 9.93 -26.69 -0.26 -4.65 16 24 C -0.14 -3.16 9.18 -26.69 -0.24 -3.41 16 25 H 0.06 0.90 6.56 -51.92 -0.34 0.55 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 29 H 0.11 1.62 5.60 -51.93 -0.29 1.33 16 30 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.09 1.05 7.15 -51.93 -0.37 0.68 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.14 8.03 -51.93 -0.42 0.72 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.41 8.57 7.44 -40.82 -0.30 8.27 16 38 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 40 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -28.14 366.10 -8.70 -36.84 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -7.17 Total: 10.24 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.11 Total: -2.91 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.06 Total: -45.52 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.15 Total: -19.97 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.14 -8.70 -36.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327747276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.254 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds