Wall clock time and date at job start Tue Mar 31 2020 07:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47350 * 2 1 4 4 C 1.46495 * 119.99983 * 259.94312 * 3 2 1 5 5 C 1.52998 * 109.47390 * 270.00316 * 4 3 2 6 6 C 1.52999 * 117.49464 * 243.62203 * 5 4 3 7 7 C 1.53005 * 117.49414 * 175.00116 * 5 4 3 8 8 C 1.34783 * 119.99650 * 79.94909 * 3 2 1 9 9 O 1.21347 * 119.99440 * 180.35227 * 8 3 2 10 10 C 1.49440 * 120.00146 * 0.35230 * 8 3 2 11 11 O 1.21354 * 120.00496 * 4.33558 * 10 8 3 12 12 N 1.34779 * 119.99950 * 184.33749 * 10 8 3 13 13 C 1.46501 * 120.00005 * 185.04214 * 12 10 8 14 14 C 1.52998 * 109.47197 * 184.83727 * 13 12 10 15 15 C 1.50701 * 115.55086 * 305.58266 * 14 13 12 16 16 H 1.08004 * 119.99942 * 95.30901 * 15 14 13 17 17 C 1.37874 * 120.00150 * 275.02951 * 15 14 13 18 18 N 1.31512 * 119.99676 * 355.38274 * 17 15 14 19 19 Si 1.86804 * 120.00107 * 175.38220 * 17 15 14 20 20 H 1.48495 * 109.46976 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47021 * 120.00002 * 19 17 15 22 22 H 1.48499 * 109.46998 * 240.00139 * 19 17 15 23 23 C 1.53008 * 117.49791 * 91.24981 * 14 13 12 24 24 C 1.53001 * 117.50297 * 159.90877 * 14 13 12 25 25 H 1.09010 * 109.46810 * 299.99850 * 1 2 3 26 26 H 1.08996 * 109.47193 * 59.99691 * 1 2 3 27 27 H 1.09003 * 109.47369 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47094 * 239.99572 * 2 1 3 29 29 H 1.09003 * 109.46870 * 120.00505 * 2 1 3 30 30 H 1.09005 * 109.47182 * 30.00530 * 4 3 2 31 31 H 1.09005 * 109.47095 * 150.00154 * 4 3 2 32 32 H 1.08997 * 115.55103 * 29.32863 * 5 4 3 33 33 H 1.08994 * 117.50562 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49906 * 145.02392 * 6 5 4 35 35 H 1.09000 * 117.49354 * 214.97814 * 7 5 4 36 36 H 1.08998 * 117.50301 * 0.02562 * 7 5 4 37 37 H 0.96998 * 120.00365 * 5.04380 * 12 10 8 38 38 H 1.08996 * 109.46850 * 64.84285 * 13 12 10 39 39 H 1.08990 * 109.47460 * 304.83877 * 13 12 10 40 40 H 0.97008 * 119.99795 * 184.99828 * 18 17 15 41 41 H 1.08993 * 117.49861 * 215.00818 * 23 14 13 42 42 H 1.09000 * 117.49574 * 0.02562 * 23 14 13 43 43 H 1.09002 * 117.49365 * 359.97438 * 24 14 13 44 44 H 1.08992 * 117.50009 * 144.97524 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4714 1.9979 -1.2492 5 6 3.9682 1.7391 -1.4323 6 6 4.8994 2.9530 -1.4381 7 6 4.6106 2.2042 -2.7407 8 6 2.0510 2.0844 1.1494 9 8 2.4495 3.2306 1.1482 10 6 1.5963 1.4526 2.4251 11 8 1.2723 0.2832 2.4413 12 7 1.5461 2.1815 3.5576 13 6 1.2072 1.5373 4.8290 14 6 1.1014 2.5983 5.9262 15 6 2.3071 3.4879 6.0885 16 1 2.3395 4.4486 5.5962 17 6 3.3662 3.0777 6.8701 18 7 3.2873 1.9526 7.5464 19 14 4.9132 4.1201 6.9684 20 1 4.7509 5.3280 6.1199 21 1 5.1446 4.5311 8.3765 22 1 6.0742 3.3296 6.4863 23 6 -0.2739 3.2197 6.1779 24 6 0.3175 2.2337 7.1885 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9230 1.5670 -2.0869 31 1 2.2905 3.0721 -1.2106 32 1 4.3440 0.8181 -0.9865 33 1 4.4459 3.9359 -1.3110 34 1 5.8882 2.8309 -0.9960 35 1 5.4094 1.5894 -3.1555 36 1 3.9671 2.6949 -3.4708 37 1 1.7343 3.1327 3.5310 38 1 1.9846 0.8198 5.0912 39 1 0.2530 1.0197 4.7310 40 1 4.0015 1.6998 8.1523 41 1 -0.3067 4.2717 6.4608 42 1 -1.1035 2.8722 5.5621 43 1 -0.1233 1.2380 7.2370 44 1 0.6740 2.6368 8.1363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327747276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:53 Heat of formation + Delta-G solvation = -30.157595 kcal Electronic energy + Delta-G solvation = -24276.739915 eV Core-core repulsion = 20809.538834 eV Total energy + Delta-G solvation = -3467.201082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.87089 -39.81417 -38.49929 -38.34963 -36.81770 -34.85739 -33.98559 -31.65787 -29.27855 -28.12988 -27.27203 -24.91952 -23.70068 -23.16976 -22.89615 -21.70436 -21.39835 -20.44242 -18.77438 -18.25999 -17.87348 -17.12699 -16.83249 -16.67726 -16.23461 -15.95925 -15.75149 -15.37394 -15.00066 -14.69488 -14.61714 -14.37997 -13.84179 -13.66783 -13.50767 -13.40612 -13.01309 -12.94739 -12.88727 -12.62380 -12.38032 -12.36150 -12.29337 -12.01740 -11.88902 -11.41984 -11.38552 -10.97914 -10.90508 -10.49515 -10.38460 -10.10870 -9.94038 -9.75930 -8.12469 -6.25709 0.42272 1.37208 1.38083 1.42554 1.51516 2.19990 2.39680 2.52970 2.91346 3.15284 3.37340 3.57948 3.75472 3.95318 4.05449 4.17417 4.20754 4.33458 4.41319 4.50588 4.51309 4.63664 4.64373 4.68579 4.71752 4.80034 4.84960 4.93425 5.02057 5.02289 5.08599 5.22519 5.26381 5.27665 5.28979 5.47132 5.48954 5.56359 5.69062 5.76020 5.99622 6.34583 6.40948 6.78121 6.82136 7.05575 7.44267 8.94278 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.004567 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.430256 B = 6129.891375 C = 7411.734710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.575 5.575 4 C 0.142 3.858 5 C -0.183 4.183 6 C -0.194 4.194 7 C -0.145 4.145 8 C 0.506 3.494 9 O -0.544 6.544 10 C 0.492 3.508 11 O -0.538 6.538 12 N -0.671 5.671 13 C 0.177 3.823 14 C -0.003 4.003 15 C -0.506 4.506 16 H 0.056 0.944 17 C 0.032 3.968 18 N -0.902 5.902 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.288 1.288 23 C -0.183 4.183 24 C -0.145 4.145 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.412 0.588 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -2.986 -19.464 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.028 4.028 3 N -0.307 5.307 4 C 0.021 3.979 5 C -0.202 4.202 6 C -0.231 4.231 7 C -0.182 4.182 8 C 0.288 3.712 9 O -0.421 6.421 10 C 0.273 3.727 11 O -0.417 6.417 12 N -0.321 5.321 13 C 0.053 3.947 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.075 0.925 17 C -0.169 4.169 18 N -0.539 5.539 19 Si 0.768 3.232 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.214 1.214 23 C -0.220 4.220 24 C -0.183 4.183 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.577 -3.363 -19.360 19.818 hybrid contribution 1.190 0.860 0.899 1.722 sum -1.387 -2.503 -18.461 18.682 Atomic orbital electron populations 1.22037 0.94993 1.03044 1.01106 1.22174 0.95466 0.80153 1.05050 1.47955 1.60944 1.15182 1.06637 1.21345 0.92623 0.99151 0.84765 1.22705 0.94317 0.99202 1.03963 1.23024 1.00559 0.96477 1.03024 1.23031 1.02876 1.02416 0.89907 1.20176 0.79536 0.85938 0.85538 1.90728 1.46977 1.18186 1.86244 1.20310 0.79930 0.86879 0.85551 1.90618 1.48816 1.16305 1.85995 1.45840 1.65972 1.13593 1.06694 1.20761 0.97998 0.94501 0.81390 1.19088 0.90704 0.96618 0.93989 1.20641 1.00326 1.02675 1.30738 0.92545 1.25580 1.00471 0.95697 0.95192 1.70087 1.33944 1.23175 1.26700 0.85759 0.80348 0.79264 0.77846 1.19205 1.20502 1.21387 1.23054 0.96990 0.98009 1.03953 1.22377 1.03692 0.97832 0.94418 0.94879 0.91667 0.90169 0.87470 0.89297 0.86305 0.90669 0.88286 0.89453 0.89622 0.87405 0.86956 0.75134 0.94306 0.92397 0.93082 0.90082 0.89172 0.90583 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.63 71.98 0.69 -2.51 16 2 C 0.09 2.02 5.74 86.38 0.50 2.52 16 3 N -0.57 -14.74 2.51 -823.40 -2.06 -16.80 16 4 C 0.14 2.83 5.65 86.38 0.49 3.32 16 5 C -0.18 -3.58 6.01 -10.79 -0.06 -3.65 16 6 C -0.19 -4.09 10.18 30.60 0.31 -3.78 16 7 C -0.15 -2.08 10.25 30.60 0.31 -1.77 16 8 C 0.51 17.27 7.64 87.26 0.67 17.94 16 9 O -0.54 -21.01 16.07 -3.24 -0.05 -21.06 16 10 C 0.49 18.70 7.35 87.27 0.64 19.34 16 11 O -0.54 -20.65 11.74 -3.26 -0.04 -20.69 16 12 N -0.67 -27.71 5.40 -464.43 -2.51 -30.21 16 13 C 0.18 7.88 5.60 86.38 0.48 8.37 16 14 C 0.00 -0.15 1.62 -52.92 -0.09 -0.24 16 15 C -0.51 -26.43 8.07 25.60 0.21 -26.23 16 16 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 17 C 0.03 1.71 5.43 84.65 0.46 2.17 16 18 N -0.90 -50.41 12.65 21.45 0.27 -50.14 16 19 Si 0.94 43.33 29.54 68.60 2.03 45.36 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 C -0.18 -7.42 9.93 30.62 0.30 -7.12 16 24 C -0.14 -6.54 9.18 30.62 0.28 -6.26 16 25 H 0.03 0.89 6.56 -2.38 -0.02 0.87 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 1.59 8.00 -2.39 -0.02 1.57 16 29 H 0.09 2.45 5.60 -2.39 -0.01 2.43 16 30 H 0.12 1.53 8.07 -2.38 -0.02 1.51 16 31 H 0.07 1.71 7.15 -2.38 -0.02 1.70 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.02 8.03 -2.39 -0.02 2.00 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 17.39 7.44 -92.71 -0.69 16.70 16 38 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 40 H 0.26 13.98 8.32 -92.70 -0.77 13.21 16 41 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -61.47 366.10 3.13 -58.34 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.30 Total: 33.08 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.19 Total: 2.12 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -4.30 Total: -97.15 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.09 Total: -41.75 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -61.47 3.13 -58.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327747276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.183 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds