Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 115.55855 * 2 1 4 4 C 1.52992 * 117.49620 * 214.31393 * 2 1 3 5 5 C 1.52994 * 60.00089 * 252.50526 * 4 2 1 6 6 H 1.09001 * 117.52599 * 252.51811 * 5 4 2 7 7 C 1.53007 * 117.49400 * 107.48518 * 5 4 2 8 8 N 1.46500 * 109.46698 * 116.38352 * 7 5 4 9 9 C 1.34775 * 119.99982 * 179.97438 * 8 7 5 10 10 O 1.21344 * 119.99943 * 0.02562 * 9 8 7 11 11 C 1.49451 * 120.00033 * 179.97438 * 9 8 7 12 12 O 1.21344 * 120.00395 * 353.29619 * 11 9 8 13 13 N 1.34776 * 119.99675 * 173.29345 * 11 9 8 14 14 C 1.46924 * 120.63369 * 351.24803 * 13 11 9 15 15 C 1.53191 * 108.77991 * 233.58767 * 14 13 11 16 16 C 1.53045 * 109.31104 * 305.36485 * 15 14 13 17 17 C 1.53048 * 109.53494 * 61.36450 * 16 15 14 18 18 H 1.09000 * 109.52247 * 58.60587 * 17 16 15 19 19 C 1.50696 * 109.49405 * 178.67993 * 17 16 15 20 20 H 1.08003 * 120.00532 * 5.30759 * 19 17 16 21 21 C 1.37878 * 119.99854 * 185.30299 * 19 17 16 22 22 N 1.31520 * 120.00227 * 206.55319 * 21 19 17 23 23 Si 1.86796 * 120.00195 * 26.28079 * 21 19 17 24 24 H 1.48497 * 109.47478 * 180.27364 * 23 21 19 25 25 H 1.48507 * 109.47001 * 300.27721 * 23 21 19 26 26 H 1.48503 * 109.47236 * 60.27247 * 23 21 19 27 27 C 1.46932 * 120.62813 * 171.23190 * 13 11 9 28 28 H 1.09006 * 109.46926 * 274.31102 * 1 2 3 29 29 H 1.09003 * 109.47072 * 34.30991 * 1 2 3 30 30 H 1.08991 * 109.47165 * 154.31096 * 1 2 3 31 31 H 1.09006 * 117.49663 * 145.01891 * 4 2 1 32 32 H 1.09000 * 117.50520 * 359.97438 * 4 2 1 33 33 H 1.08995 * 109.47389 * 356.38778 * 7 5 4 34 34 H 1.08997 * 109.47107 * 236.37943 * 7 5 4 35 35 H 0.96999 * 120.00193 * 359.97438 * 8 7 5 36 36 H 1.08996 * 109.58414 * 353.37931 * 14 13 11 37 37 H 1.09003 * 109.58393 * 113.80323 * 14 13 11 38 38 H 1.09001 * 109.49770 * 65.31794 * 15 14 13 39 39 H 1.08996 * 109.50111 * 185.38254 * 15 14 13 40 40 H 1.08997 * 109.46286 * 301.34619 * 16 15 14 41 41 H 1.09000 * 109.45690 * 181.38062 * 16 15 14 42 42 H 0.97001 * 119.99210 * 354.70441 * 22 21 19 43 43 H 1.08996 * 109.58722 * 6.62291 * 27 13 11 44 44 H 1.09001 * 109.69908 * 246.27197 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7649 6 1 3.1714 -0.8751 1.2686 7 6 1.3588 -2.1562 1.4713 8 7 2.2059 -3.0706 2.2411 9 6 1.6468 -4.0710 2.9504 10 8 0.4418 -4.2146 2.9510 11 6 2.5109 -5.0043 3.7352 12 8 3.7187 -4.9389 3.6386 13 7 1.9486 -5.9185 4.5503 14 6 0.5059 -5.8883 4.8267 15 6 0.2947 -5.8682 6.3439 16 6 1.0306 -7.0535 6.9730 17 6 2.5302 -6.9323 6.6924 18 1 2.9020 -5.9918 7.0988 19 6 3.2576 -8.0825 7.3397 20 1 2.6997 -8.8713 7.8224 21 6 4.6354 -8.1278 7.3157 22 7 5.2565 -9.2853 7.3808 23 14 5.6198 -6.5459 7.1831 24 1 7.0701 -6.8648 7.1706 25 1 5.2571 -5.8409 5.9274 26 1 5.3148 -5.6740 8.3459 27 6 2.7666 -6.9645 5.1792 28 1 -0.3633 0.0773 1.0248 29 1 -0.3633 0.8489 -0.5793 30 1 -0.3633 -0.9260 -0.4454 31 1 3.1715 -0.8750 -1.2684 32 1 1.6112 -1.8587 -1.2680 33 1 0.7947 -2.7213 0.7294 34 1 0.6677 -1.6482 2.1439 35 1 3.1691 -2.9562 2.2403 36 1 0.0679 -4.9934 4.3849 37 1 0.0342 -6.7755 4.4039 38 1 0.6871 -4.9374 6.7535 39 1 -0.7702 -5.9422 6.5640 40 1 0.6550 -7.9829 6.5449 41 1 0.8617 -7.0556 8.0499 42 1 4.7499 -10.1001 7.5229 43 1 3.8202 -6.7795 4.9700 44 1 2.4818 -7.9402 4.7855 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328836016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -44.959232 kcal Electronic energy + Delta-G solvation = -24109.301460 eV Core-core repulsion = 20641.458531 eV Total energy + Delta-G solvation = -3467.842929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69172 -38.98379 -38.09315 -37.06156 -34.65037 -33.27344 -31.90456 -30.32929 -29.15103 -27.82881 -25.53539 -24.85332 -22.58664 -21.93269 -21.72439 -20.60567 -19.68687 -18.82011 -17.63273 -17.11664 -17.00612 -16.24330 -15.95516 -15.24867 -14.74798 -14.37176 -14.06000 -14.02710 -13.77219 -13.57428 -13.39734 -13.25379 -13.18858 -12.85377 -12.55892 -12.33647 -11.93196 -11.88169 -11.60724 -11.57353 -11.03491 -10.83538 -10.47778 -10.38391 -10.33525 -10.29599 -10.14076 -9.73235 -9.60261 -9.33187 -9.14761 -8.81055 -8.13273 -8.04475 -6.51538 -4.08955 1.62155 2.50541 3.29953 3.43729 3.48210 3.54773 3.68900 3.77658 4.18841 4.42147 4.42961 4.51469 4.55697 4.83666 4.91804 5.18670 5.19363 5.34790 5.41920 5.42916 5.46182 5.47027 5.50688 5.62751 5.69198 5.77114 5.89825 5.97367 6.08486 6.16704 6.26544 6.37778 6.51843 6.60227 6.67422 6.79958 6.85179 7.09933 7.22427 7.42791 7.72233 7.88074 8.12055 8.32488 8.35332 8.89590 9.57229 10.87058 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.003686 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.865329 B = 7594.672139 C = 8414.043085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.172 4.172 5 C -0.170 4.170 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.702 5.702 9 C 0.510 3.490 10 O -0.516 6.516 11 C 0.495 3.505 12 O -0.528 6.528 13 N -0.571 5.571 14 C 0.073 3.927 15 C -0.136 4.136 16 C -0.103 4.103 17 C 0.018 3.982 18 H 0.023 0.977 19 C -0.612 4.612 20 H 0.059 0.941 21 C 0.039 3.961 22 N -0.891 5.891 23 Si 1.029 2.971 24 H -0.285 1.285 25 H -0.263 1.263 26 H -0.284 1.284 27 C 0.104 3.896 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.414 0.586 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.269 0.731 43 H 0.088 0.912 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 17.335 -13.959 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.209 4.209 5 C -0.189 4.189 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.355 5.355 9 C 0.292 3.708 10 O -0.394 6.394 11 C 0.276 3.724 12 O -0.406 6.406 13 N -0.303 5.303 14 C -0.049 4.049 15 C -0.174 4.174 16 C -0.141 4.141 17 C -0.002 4.002 18 H 0.041 0.959 19 C -0.650 4.650 20 H 0.077 0.923 21 C -0.168 4.168 22 N -0.523 5.523 23 Si 0.856 3.144 24 H -0.211 1.211 25 H -0.188 1.188 26 H -0.210 1.210 27 C -0.016 4.016 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.347 17.812 -14.153 24.233 hybrid contribution -1.055 -0.702 0.240 1.290 sum -9.403 17.110 -13.912 23.973 Atomic orbital electron populations 1.21404 0.92566 1.02276 1.02272 1.22379 0.95645 0.94362 1.03690 0.87468 1.23243 1.02797 1.01499 0.93352 1.22546 1.01649 1.00074 0.94605 0.86873 1.20950 0.92266 0.89459 0.94621 1.45816 1.11992 1.29618 1.48081 1.20566 0.88227 0.81619 0.80340 1.90484 1.14824 1.72013 1.62034 1.19915 0.87947 0.82618 0.81917 1.90758 1.13902 1.70378 1.65516 1.48429 1.10266 1.28578 1.43059 1.22726 0.79945 1.05623 0.96595 1.22011 1.00070 1.00172 0.95196 1.21500 0.96878 0.96106 0.99603 1.19224 0.92713 0.97947 0.90341 0.95925 1.21788 0.93105 1.08681 1.41375 0.92328 1.25774 0.95726 1.02283 0.93029 1.70902 1.40401 0.98445 1.42600 0.84200 0.76335 0.75718 0.78169 1.21071 1.18827 1.21050 1.22804 0.95653 0.87409 0.95760 0.91823 0.91952 0.92223 0.88501 0.88405 0.90862 0.90536 0.74981 0.85433 0.91828 0.92313 0.91704 0.92887 0.92637 0.92048 0.89366 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.14 -0.90 6.41 -90.62 -0.58 -1.48 16 3 H 0.11 0.60 8.14 -51.92 -0.42 0.17 16 4 C -0.17 -1.14 9.82 -26.74 -0.26 -1.40 16 5 C -0.17 -1.26 5.85 -90.62 -0.53 -1.79 16 6 H 0.11 0.80 8.04 -51.93 -0.42 0.39 16 7 C 0.15 1.42 5.04 -4.04 -0.02 1.40 16 8 N -0.70 -8.45 5.55 -60.73 -0.34 -8.79 16 9 C 0.51 7.89 7.74 -11.59 -0.09 7.80 16 10 O -0.52 -8.33 13.19 5.50 0.07 -8.25 16 11 C 0.49 9.35 7.73 -11.58 -0.09 9.26 16 12 O -0.53 -11.24 15.93 5.50 0.09 -11.15 16 13 N -0.57 -11.23 2.97 -173.28 -0.52 -11.74 16 14 C 0.07 1.22 5.98 -3.71 -0.02 1.20 16 15 C -0.14 -2.26 6.08 -26.61 -0.16 -2.43 16 16 C -0.10 -2.07 5.11 -26.68 -0.14 -2.20 16 17 C 0.02 0.42 1.85 -91.65 -0.17 0.25 16 18 H 0.02 0.56 6.70 -51.93 -0.35 0.21 16 19 C -0.61 -17.00 8.74 -34.44 -0.30 -17.30 16 20 H 0.06 1.73 7.99 -52.48 -0.42 1.31 16 21 C 0.04 1.14 5.25 -17.82 -0.09 1.04 16 22 N -0.89 -27.16 13.70 55.43 0.76 -26.40 16 23 Si 1.03 25.90 26.67 -169.99 -4.53 21.37 16 24 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.26 -6.54 6.05 56.52 0.34 -6.20 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.10 2.37 5.43 -3.71 -0.02 2.35 16 28 H 0.06 0.39 7.83 -51.93 -0.41 -0.02 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.65 7.94 -51.93 -0.41 0.24 16 33 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 34 H 0.08 0.73 7.77 -51.93 -0.40 0.33 16 35 H 0.41 4.67 7.89 -40.82 -0.32 4.35 16 36 H 0.13 2.06 4.33 -54.73 -0.24 1.83 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 43 H 0.09 2.21 4.58 -51.93 -0.24 1.98 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -31.60 349.34 -8.38 -39.97 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.04 Total: 3.44 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.14 Total: -3.72 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.09 Total: -46.93 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.16 Total: -19.40 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -4.53 Total: 21.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.60 -8.38 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328836016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.986 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds