Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 115.55855 * 2 1 4 4 C 1.52992 * 117.49620 * 214.31393 * 2 1 3 5 5 C 1.52994 * 60.00089 * 252.50526 * 4 2 1 6 6 H 1.09001 * 117.52599 * 252.51811 * 5 4 2 7 7 C 1.53007 * 117.49400 * 107.48518 * 5 4 2 8 8 N 1.46500 * 109.46698 * 116.38352 * 7 5 4 9 9 C 1.34775 * 119.99982 * 179.97438 * 8 7 5 10 10 O 1.21344 * 119.99943 * 0.02562 * 9 8 7 11 11 C 1.49451 * 120.00033 * 179.97438 * 9 8 7 12 12 O 1.21344 * 120.00395 * 353.29619 * 11 9 8 13 13 N 1.34776 * 119.99675 * 173.29345 * 11 9 8 14 14 C 1.46924 * 120.63369 * 351.24803 * 13 11 9 15 15 C 1.53191 * 108.77991 * 233.58767 * 14 13 11 16 16 C 1.53045 * 109.31104 * 305.36485 * 15 14 13 17 17 C 1.53048 * 109.53494 * 61.36450 * 16 15 14 18 18 H 1.09000 * 109.52247 * 58.60587 * 17 16 15 19 19 C 1.50696 * 109.49405 * 178.67993 * 17 16 15 20 20 H 1.08003 * 120.00532 * 5.30759 * 19 17 16 21 21 C 1.37878 * 119.99854 * 185.30299 * 19 17 16 22 22 N 1.31520 * 120.00227 * 206.55319 * 21 19 17 23 23 Si 1.86796 * 120.00195 * 26.28079 * 21 19 17 24 24 H 1.48497 * 109.47478 * 180.27364 * 23 21 19 25 25 H 1.48507 * 109.47001 * 300.27721 * 23 21 19 26 26 H 1.48503 * 109.47236 * 60.27247 * 23 21 19 27 27 C 1.46932 * 120.62813 * 171.23190 * 13 11 9 28 28 H 1.09006 * 109.46926 * 274.31102 * 1 2 3 29 29 H 1.09003 * 109.47072 * 34.30991 * 1 2 3 30 30 H 1.08991 * 109.47165 * 154.31096 * 1 2 3 31 31 H 1.09006 * 117.49663 * 145.01891 * 4 2 1 32 32 H 1.09000 * 117.50520 * 359.97438 * 4 2 1 33 33 H 1.08995 * 109.47389 * 356.38778 * 7 5 4 34 34 H 1.08997 * 109.47107 * 236.37943 * 7 5 4 35 35 H 0.96999 * 120.00193 * 359.97438 * 8 7 5 36 36 H 1.08996 * 109.58414 * 353.37931 * 14 13 11 37 37 H 1.09003 * 109.58393 * 113.80323 * 14 13 11 38 38 H 1.09001 * 109.49770 * 65.31794 * 15 14 13 39 39 H 1.08996 * 109.50111 * 185.38254 * 15 14 13 40 40 H 1.08997 * 109.46286 * 301.34619 * 16 15 14 41 41 H 1.09000 * 109.45690 * 181.38062 * 16 15 14 42 42 H 0.97001 * 119.99210 * 354.70441 * 22 21 19 43 43 H 1.08996 * 109.58722 * 6.62291 * 27 13 11 44 44 H 1.09001 * 109.69908 * 246.27197 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2365 -1.1210 0.7649 6 1 3.1714 -0.8751 1.2686 7 6 1.3588 -2.1562 1.4713 8 7 2.2059 -3.0706 2.2411 9 6 1.6468 -4.0710 2.9504 10 8 0.4418 -4.2146 2.9510 11 6 2.5109 -5.0043 3.7352 12 8 3.7187 -4.9389 3.6386 13 7 1.9486 -5.9185 4.5503 14 6 0.5059 -5.8883 4.8267 15 6 0.2947 -5.8682 6.3439 16 6 1.0306 -7.0535 6.9730 17 6 2.5302 -6.9323 6.6924 18 1 2.9020 -5.9918 7.0988 19 6 3.2576 -8.0825 7.3397 20 1 2.6997 -8.8713 7.8224 21 6 4.6354 -8.1278 7.3157 22 7 5.2565 -9.2853 7.3808 23 14 5.6198 -6.5459 7.1831 24 1 7.0701 -6.8648 7.1706 25 1 5.2571 -5.8409 5.9274 26 1 5.3148 -5.6740 8.3459 27 6 2.7666 -6.9645 5.1792 28 1 -0.3633 0.0773 1.0248 29 1 -0.3633 0.8489 -0.5793 30 1 -0.3633 -0.9260 -0.4454 31 1 3.1715 -0.8750 -1.2684 32 1 1.6112 -1.8587 -1.2680 33 1 0.7947 -2.7213 0.7294 34 1 0.6677 -1.6482 2.1439 35 1 3.1691 -2.9562 2.2403 36 1 0.0679 -4.9934 4.3849 37 1 0.0342 -6.7755 4.4039 38 1 0.6871 -4.9374 6.7535 39 1 -0.7702 -5.9422 6.5640 40 1 0.6550 -7.9829 6.5449 41 1 0.8617 -7.0556 8.0499 42 1 4.7499 -10.1001 7.5229 43 1 3.8202 -6.7795 4.9700 44 1 2.4818 -7.9402 4.7855 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328836016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -65.851380 kcal Electronic energy + Delta-G solvation = -24110.207412 eV Core-core repulsion = 20641.458531 eV Total energy + Delta-G solvation = -3468.748880 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03249 -40.10364 -38.97766 -38.64255 -35.83065 -35.11853 -33.60289 -32.09953 -29.76598 -28.70278 -27.03409 -26.64769 -23.93228 -23.41442 -22.50482 -21.64471 -20.93514 -20.17082 -19.74326 -18.46410 -18.19089 -17.30420 -17.19482 -16.40092 -16.02034 -15.76798 -15.51287 -15.42352 -15.23968 -14.89980 -14.66802 -14.49208 -14.23870 -13.94511 -13.87001 -13.69922 -13.24284 -13.09872 -12.78817 -12.59005 -12.44099 -12.21738 -12.14870 -12.01739 -11.75120 -11.60590 -11.46817 -11.13129 -11.05623 -10.85635 -10.37774 -10.30075 -10.11428 -9.72244 -8.80209 -6.38115 0.28053 1.25028 1.43734 1.50177 1.67828 2.05205 2.41796 2.43452 2.82109 2.96869 3.26305 3.60474 3.89446 3.91364 4.00389 4.10030 4.16754 4.23434 4.42088 4.45074 4.50766 4.55787 4.64573 4.66781 4.73322 4.84510 4.91372 4.93302 4.97943 4.99219 5.07465 5.13131 5.17865 5.24733 5.27877 5.37925 5.44825 5.48467 5.58121 5.92997 6.01780 6.07863 6.28904 6.58890 6.65680 6.87522 7.34615 8.56895 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.003686 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.865329 B = 7594.672139 C = 8414.043085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 H 0.118 0.882 4 C -0.172 4.172 5 C -0.178 4.178 6 H 0.118 0.882 7 C 0.151 3.849 8 N -0.685 5.685 9 C 0.519 3.481 10 O -0.522 6.522 11 C 0.489 3.511 12 O -0.557 6.557 13 N -0.578 5.578 14 C 0.073 3.927 15 C -0.127 4.127 16 C -0.100 4.100 17 C 0.015 3.985 18 H 0.017 0.983 19 C -0.611 4.611 20 H 0.030 0.970 21 C -0.005 4.005 22 N -0.923 5.923 23 Si 1.068 2.932 24 H -0.286 1.286 25 H -0.260 1.260 26 H -0.264 1.264 27 C 0.115 3.885 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.418 0.582 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.258 0.742 43 H 0.062 0.938 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 20.107 -15.165 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 H 0.136 0.864 4 C -0.209 4.209 5 C -0.197 4.197 6 H 0.136 0.864 7 C 0.029 3.971 8 N -0.337 5.337 9 C 0.300 3.700 10 O -0.401 6.401 11 C 0.272 3.728 12 O -0.436 6.436 13 N -0.310 5.310 14 C -0.047 4.047 15 C -0.165 4.165 16 C -0.138 4.138 17 C -0.005 4.005 18 H 0.036 0.964 19 C -0.649 4.649 20 H 0.048 0.952 21 C -0.206 4.206 22 N -0.557 5.557 23 Si 0.891 3.109 24 H -0.212 1.212 25 H -0.185 1.185 26 H -0.189 1.189 27 C -0.007 4.007 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.256 0.744 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.853 20.616 -15.370 27.538 hybrid contribution -0.648 -1.575 0.575 1.798 sum -10.502 19.041 -14.795 26.301 Atomic orbital electron populations 1.21438 0.92330 1.02617 1.02364 1.22473 0.95858 0.94518 1.02429 0.86416 1.23311 1.03256 1.01649 0.92708 1.22497 1.01817 1.00323 0.95031 0.86411 1.21112 0.92298 0.89296 0.94419 1.45831 1.12597 1.28528 1.46769 1.19809 0.87539 0.81949 0.80744 1.90470 1.14582 1.72354 1.62668 1.20557 0.88050 0.82631 0.81529 1.90736 1.15399 1.71207 1.66266 1.48411 1.11158 1.28115 1.43272 1.22946 0.78111 1.06779 0.96910 1.21967 1.01745 0.98227 0.94518 1.21427 0.94543 0.97865 0.99981 1.19187 0.95006 0.95696 0.90573 0.96448 1.22008 0.93222 1.09015 1.40619 0.95193 1.26877 0.97286 1.03818 0.92641 1.71001 1.40532 0.98739 1.45451 0.83672 0.75144 0.73138 0.78930 1.21173 1.18502 1.18913 1.22254 0.94853 0.88252 0.95300 0.91949 0.90968 0.92505 0.87739 0.88505 0.90791 0.90205 0.74448 0.84000 0.90956 0.92152 0.88041 0.93184 0.92736 0.93241 0.91912 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.19 71.98 0.66 -0.58 16 2 C -0.13 -1.34 6.41 -10.80 -0.07 -1.41 16 3 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.17 -1.87 9.82 30.59 0.30 -1.57 16 5 C -0.18 -2.21 5.85 -10.79 -0.06 -2.27 16 6 H 0.12 1.38 8.04 -2.39 -0.02 1.36 16 7 C 0.15 2.48 5.04 86.38 0.44 2.92 16 8 N -0.68 -15.03 5.55 -464.42 -2.58 -17.60 16 9 C 0.52 14.95 7.74 87.27 0.68 15.63 16 10 O -0.52 -15.44 13.19 -3.23 -0.04 -15.48 16 11 C 0.49 17.93 7.73 87.27 0.67 18.60 16 12 O -0.56 -23.40 15.93 -3.23 -0.05 -23.45 16 13 N -0.58 -22.03 2.97 -820.50 -2.44 -24.46 16 14 C 0.07 2.27 5.98 86.36 0.52 2.78 16 15 C -0.13 -3.83 6.08 30.67 0.19 -3.64 16 16 C -0.10 -3.90 5.11 30.63 0.16 -3.74 16 17 C 0.02 0.72 1.85 -11.46 -0.02 0.70 16 18 H 0.02 0.85 6.70 -2.39 -0.02 0.83 16 19 C -0.61 -34.69 8.74 25.60 0.22 -34.46 16 20 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 21 C 0.00 -0.27 5.25 84.65 0.44 0.17 16 22 N -0.92 -57.92 13.70 21.45 0.29 -57.62 16 23 Si 1.07 53.04 26.67 68.60 1.83 54.87 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.26 -12.75 6.05 99.48 0.60 -12.15 16 26 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.12 5.28 5.43 86.36 0.47 5.75 16 28 H 0.06 0.62 7.83 -2.38 -0.02 0.60 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.57 7.90 -2.39 -0.02 0.55 16 31 H 0.10 0.98 8.14 -2.38 -0.02 0.97 16 32 H 0.10 1.08 7.94 -2.39 -0.02 1.06 16 33 H 0.07 1.26 7.87 -2.39 -0.02 1.24 16 34 H 0.08 1.32 7.77 -2.39 -0.02 1.30 16 35 H 0.42 8.65 7.89 -92.71 -0.73 7.91 16 36 H 0.14 4.13 4.33 -46.68 -0.20 3.93 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 42 H 0.26 16.22 8.73 -92.71 -0.81 15.41 16 43 H 0.06 3.19 4.58 -2.39 -0.01 3.18 16 44 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -68.89 349.34 1.54 -67.35 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -0.06 Total: 17.54 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 4.59 Total: -1.14 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -4.72 Total: -99.69 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.09 Total: -38.93 kcal Atomic # 14 Polarization: 53.04 SS G_CDS: 1.83 Total: 54.87 kcal Total: -68.89 1.54 -67.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328836016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.501 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds