Wall clock time and date at job start Tue Mar 31 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 115.54943 * 2 1 4 4 C 1.53076 * 117.53394 * 214.28599 * 2 1 3 5 5 C 1.52995 * 59.98252 * 252.52894 * 4 2 1 6 6 H 1.09005 * 117.50060 * 252.49180 * 5 4 2 7 7 C 1.53003 * 117.49925 * 107.49971 * 5 4 2 8 8 N 1.46498 * 109.47063 * 116.25007 * 7 5 4 9 9 C 1.34777 * 119.99916 * 179.97438 * 8 7 5 10 10 O 1.21351 * 120.00189 * 359.73167 * 9 8 7 11 11 C 1.49453 * 119.99936 * 179.72385 * 9 8 7 12 12 O 1.21347 * 120.00342 * 6.75187 * 11 9 8 13 13 N 1.34778 * 119.99816 * 186.74321 * 11 9 8 14 14 C 1.46926 * 120.63230 * 8.43624 * 13 11 9 15 15 C 1.53619 * 108.54720 * 126.36172 * 14 13 11 16 16 C 1.53039 * 109.24057 * 54.85654 * 15 14 13 17 17 C 1.53039 * 109.53816 * 298.51182 * 16 15 14 18 18 H 1.09001 * 109.52300 * 301.39633 * 17 16 15 19 19 C 1.50702 * 109.50197 * 181.32100 * 17 16 15 20 20 H 1.08006 * 119.99471 * 0.15443 * 19 17 16 21 21 C 1.37877 * 120.00318 * 180.16095 * 19 17 16 22 22 N 1.31505 * 120.00026 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99739 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46909 * 90.00483 * 23 21 19 25 25 H 1.48501 * 109.47017 * 209.99826 * 23 21 19 26 26 H 1.48500 * 109.47532 * 330.00529 * 23 21 19 27 27 C 1.46924 * 120.62944 * 188.70602 * 13 11 9 28 28 H 1.09002 * 109.46828 * 274.33209 * 1 2 3 29 29 H 1.08999 * 109.47161 * 34.33040 * 1 2 3 30 30 H 1.09001 * 109.47320 * 154.33036 * 1 2 3 31 31 H 1.09004 * 117.49757 * 145.04280 * 4 2 1 32 32 H 1.09002 * 117.50988 * 0.02562 * 4 2 1 33 33 H 1.08994 * 109.47129 * 356.25143 * 7 5 4 34 34 H 1.09000 * 109.46979 * 236.24874 * 7 5 4 35 35 H 0.97004 * 120.00544 * 359.72822 * 8 7 5 36 36 H 1.09001 * 109.58491 * 246.19831 * 14 13 11 37 37 H 1.09005 * 109.58609 * 6.61638 * 14 13 11 38 38 H 1.08999 * 109.63626 * 294.86313 * 15 14 13 39 39 H 1.09003 * 109.45719 * 174.73867 * 15 14 13 40 40 H 1.08995 * 109.45985 * 178.48986 * 16 15 14 41 41 H 1.08997 * 109.45460 * 58.52455 * 16 15 14 42 42 H 0.96999 * 120.00028 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.58840 * 353.37874 * 27 13 11 44 44 H 1.09004 * 109.58504 * 113.66289 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2364 -1.1207 0.7653 6 1 3.1712 -0.8746 1.2692 7 6 1.3588 -2.1560 1.4717 8 7 2.2059 -3.0714 2.2402 9 6 1.6468 -4.0720 2.9492 10 8 0.4414 -4.2117 2.9549 11 6 2.5114 -5.0097 3.7282 12 8 3.7028 -4.7995 3.8230 13 7 1.9678 -6.0886 4.3255 14 6 0.5692 -6.4599 4.0713 15 6 0.5275 -7.9278 3.6201 16 6 1.2278 -8.7972 4.6669 17 6 2.6930 -8.3722 4.7879 18 1 3.1823 -8.4714 3.8190 19 6 3.3899 -9.2500 5.7953 20 1 2.8433 -10.0347 6.2974 21 6 4.7251 -9.0514 6.0761 22 7 5.3906 -8.0963 5.4645 23 14 5.5886 -10.1392 7.3254 24 1 6.1649 -11.3222 6.6370 25 1 6.6759 -9.3707 7.9830 26 1 4.6115 -10.5894 8.3490 27 6 2.7609 -6.9126 5.2479 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3634 -0.9262 -0.4452 31 1 3.1729 -0.8755 -1.2674 32 1 1.6131 -1.8594 -1.2683 33 1 0.7938 -2.7202 0.7298 34 1 0.6684 -1.6481 2.1451 35 1 3.1695 -2.9597 2.2359 36 1 -0.0129 -6.3389 4.9849 37 1 0.1589 -5.8234 3.2872 38 1 1.0366 -8.0310 2.6619 39 1 -0.5097 -8.2467 3.5173 40 1 1.1768 -9.8428 4.3635 41 1 0.7334 -8.6743 5.6305 42 1 6.3301 -7.9568 5.6618 43 1 3.7973 -6.5749 5.2405 44 1 2.3555 -6.8258 6.2561 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328836018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:51 Heat of formation + Delta-G solvation = -44.412373 kcal Electronic energy + Delta-G solvation = -24016.696476 eV Core-core repulsion = 20548.877261 eV Total energy + Delta-G solvation = -3467.819215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48177 -38.81883 -37.91775 -36.80487 -34.51167 -33.18685 -31.71551 -29.73441 -29.07165 -27.70472 -25.45965 -24.92558 -22.49556 -21.81969 -21.78860 -20.50426 -19.72408 -18.68616 -17.13686 -16.85816 -16.32740 -16.01905 -15.55663 -15.16581 -14.53767 -14.50997 -14.21849 -13.93464 -13.74615 -13.39943 -13.20939 -13.07922 -12.85437 -12.58741 -12.46556 -12.13791 -11.86110 -11.78495 -11.52626 -11.38011 -10.97542 -10.70238 -10.44586 -10.40120 -10.28071 -10.26272 -10.10213 -9.86409 -9.21089 -9.17432 -9.10395 -8.57016 -8.43617 -7.80410 -6.00557 -4.09202 1.82656 2.69161 3.30622 3.37845 3.39599 3.40529 3.65863 3.99318 4.26858 4.42409 4.50209 4.51859 4.75057 4.92133 4.98926 5.27438 5.29408 5.42634 5.50308 5.51604 5.54497 5.61934 5.66537 5.69723 5.82897 5.89828 5.96324 6.13426 6.26303 6.38072 6.54991 6.61518 6.72702 6.86188 6.99744 7.04780 7.19445 7.27927 7.60330 7.83907 7.95625 7.99319 8.18154 8.36613 8.59991 8.94836 9.56319 11.04691 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027103 B = 0.003292 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.856882 B = 8502.593067 C = 9250.017901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.143 4.143 3 H 0.107 0.893 4 C -0.172 4.172 5 C -0.169 4.169 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.703 5.703 9 C 0.509 3.491 10 O -0.520 6.520 11 C 0.494 3.506 12 O -0.521 6.521 13 N -0.569 5.569 14 C 0.071 3.929 15 C -0.133 4.133 16 C -0.113 4.113 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.520 4.520 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.108 3.892 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.414 0.586 36 H 0.060 0.940 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.124 0.876 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 14.177 -10.178 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 H 0.125 0.875 4 C -0.209 4.209 5 C -0.188 4.188 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.356 5.356 9 C 0.292 3.708 10 O -0.397 6.397 11 C 0.274 3.726 12 O -0.398 6.398 13 N -0.301 5.301 14 C -0.051 4.051 15 C -0.171 4.171 16 C -0.150 4.150 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.558 4.558 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.519 5.519 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.012 4.012 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.016 14.261 -10.110 19.669 hybrid contribution 1.025 -0.558 0.727 1.375 sum -7.991 13.703 -9.383 18.430 Atomic orbital electron populations 1.21397 0.92599 1.02245 1.02238 1.22385 0.95616 0.94345 1.03834 0.87526 1.23253 1.02759 1.01462 0.93432 1.22551 1.01639 1.00016 0.94565 0.86877 1.20927 0.92286 0.89488 0.94594 1.45823 1.11919 1.29834 1.48055 1.20755 0.88353 0.81973 0.79749 1.90465 1.15027 1.70940 1.63290 1.19813 0.87695 0.83122 0.81921 1.90772 1.14439 1.73830 1.60778 1.48433 1.13475 1.24950 1.43279 1.22787 0.81864 0.97221 1.03242 1.22032 0.99922 0.95283 0.99899 1.21655 0.98409 0.98006 0.96966 1.18958 0.90330 0.90904 0.97622 0.95201 1.21094 0.94704 1.16209 1.23812 0.92272 1.25062 0.97527 0.95329 0.96171 1.69880 1.09552 1.30732 1.41700 0.86579 0.79345 0.80485 0.81511 1.20677 1.21185 1.19901 1.22479 0.97893 0.92026 0.88779 0.91848 0.92011 0.92209 0.88525 0.88399 0.90947 0.90658 0.74988 0.92166 0.85669 0.92426 0.92165 0.93063 0.93166 0.92651 0.85827 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.14 -1.00 6.41 -90.58 -0.58 -1.58 16 3 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.17 -1.26 9.83 -26.69 -0.26 -1.53 16 5 C -0.17 -1.39 5.84 -90.62 -0.53 -1.92 16 6 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 7 C 0.15 1.56 5.03 -4.04 -0.02 1.54 16 8 N -0.70 -9.26 5.55 -60.73 -0.34 -9.60 16 9 C 0.51 8.51 7.74 -11.58 -0.09 8.42 16 10 O -0.52 -8.99 13.18 5.50 0.07 -8.92 16 11 C 0.49 10.10 7.73 -11.58 -0.09 10.01 16 12 O -0.52 -12.05 15.93 5.50 0.09 -11.96 16 13 N -0.57 -12.02 2.97 -173.01 -0.51 -12.53 16 14 C 0.07 1.28 6.01 -3.49 -0.02 1.26 16 15 C -0.13 -2.36 6.10 -26.39 -0.16 -2.52 16 16 C -0.11 -2.33 5.10 -26.69 -0.14 -2.46 16 17 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.52 -14.11 8.56 -34.44 -0.29 -14.41 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.48 11.39 55.43 0.63 -24.85 16 23 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.11 2.64 5.41 -3.71 -0.02 2.62 16 28 H 0.06 0.42 7.84 -51.93 -0.41 0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.72 7.94 -51.93 -0.41 0.31 16 33 H 0.07 0.76 7.88 -51.93 -0.41 0.36 16 34 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 35 H 0.41 5.18 7.89 -40.82 -0.32 4.86 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.13 2.19 4.30 -54.84 -0.24 1.95 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.12 3.46 5.12 -51.93 -0.27 3.19 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -30.48 352.56 -8.98 -39.46 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.05 Total: 5.53 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.16 Total: 1.37 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.22 Total: -46.98 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.16 Total: -20.88 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.48 -8.98 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328836018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.947 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds