Wall clock time and date at job start Tue Mar 31 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 115.54943 * 2 1 4 4 C 1.53076 * 117.53394 * 214.28599 * 2 1 3 5 5 C 1.52995 * 59.98252 * 252.52894 * 4 2 1 6 6 H 1.09005 * 117.50060 * 252.49180 * 5 4 2 7 7 C 1.53003 * 117.49925 * 107.49971 * 5 4 2 8 8 N 1.46498 * 109.47063 * 116.25007 * 7 5 4 9 9 C 1.34777 * 119.99916 * 179.97438 * 8 7 5 10 10 O 1.21351 * 120.00189 * 359.73167 * 9 8 7 11 11 C 1.49453 * 119.99936 * 179.72385 * 9 8 7 12 12 O 1.21347 * 120.00342 * 6.75187 * 11 9 8 13 13 N 1.34778 * 119.99816 * 186.74321 * 11 9 8 14 14 C 1.46926 * 120.63230 * 8.43624 * 13 11 9 15 15 C 1.53619 * 108.54720 * 126.36172 * 14 13 11 16 16 C 1.53039 * 109.24057 * 54.85654 * 15 14 13 17 17 C 1.53039 * 109.53816 * 298.51182 * 16 15 14 18 18 H 1.09001 * 109.52300 * 301.39633 * 17 16 15 19 19 C 1.50702 * 109.50197 * 181.32100 * 17 16 15 20 20 H 1.08006 * 119.99471 * 0.15443 * 19 17 16 21 21 C 1.37877 * 120.00318 * 180.16095 * 19 17 16 22 22 N 1.31505 * 120.00026 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99739 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46909 * 90.00483 * 23 21 19 25 25 H 1.48501 * 109.47017 * 209.99826 * 23 21 19 26 26 H 1.48500 * 109.47532 * 330.00529 * 23 21 19 27 27 C 1.46924 * 120.62944 * 188.70602 * 13 11 9 28 28 H 1.09002 * 109.46828 * 274.33209 * 1 2 3 29 29 H 1.08999 * 109.47161 * 34.33040 * 1 2 3 30 30 H 1.09001 * 109.47320 * 154.33036 * 1 2 3 31 31 H 1.09004 * 117.49757 * 145.04280 * 4 2 1 32 32 H 1.09002 * 117.50988 * 0.02562 * 4 2 1 33 33 H 1.08994 * 109.47129 * 356.25143 * 7 5 4 34 34 H 1.09000 * 109.46979 * 236.24874 * 7 5 4 35 35 H 0.97004 * 120.00544 * 359.72822 * 8 7 5 36 36 H 1.09001 * 109.58491 * 246.19831 * 14 13 11 37 37 H 1.09005 * 109.58609 * 6.61638 * 14 13 11 38 38 H 1.08999 * 109.63626 * 294.86313 * 15 14 13 39 39 H 1.09003 * 109.45719 * 174.73867 * 15 14 13 40 40 H 1.08995 * 109.45985 * 178.48986 * 16 15 14 41 41 H 1.08997 * 109.45460 * 58.52455 * 16 15 14 42 42 H 0.96999 * 120.00028 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.58840 * 353.37874 * 27 13 11 44 44 H 1.09004 * 109.58504 * 113.66289 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2364 -1.1207 0.7653 6 1 3.1712 -0.8746 1.2692 7 6 1.3588 -2.1560 1.4717 8 7 2.2059 -3.0714 2.2402 9 6 1.6468 -4.0720 2.9492 10 8 0.4414 -4.2117 2.9549 11 6 2.5114 -5.0097 3.7282 12 8 3.7028 -4.7995 3.8230 13 7 1.9678 -6.0886 4.3255 14 6 0.5692 -6.4599 4.0713 15 6 0.5275 -7.9278 3.6201 16 6 1.2278 -8.7972 4.6669 17 6 2.6930 -8.3722 4.7879 18 1 3.1823 -8.4714 3.8190 19 6 3.3899 -9.2500 5.7953 20 1 2.8433 -10.0347 6.2974 21 6 4.7251 -9.0514 6.0761 22 7 5.3906 -8.0963 5.4645 23 14 5.5886 -10.1392 7.3254 24 1 6.1649 -11.3222 6.6370 25 1 6.6759 -9.3707 7.9830 26 1 4.6115 -10.5894 8.3490 27 6 2.7609 -6.9126 5.2479 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3634 -0.9262 -0.4452 31 1 3.1729 -0.8755 -1.2674 32 1 1.6131 -1.8594 -1.2683 33 1 0.7938 -2.7202 0.7298 34 1 0.6684 -1.6481 2.1451 35 1 3.1695 -2.9597 2.2359 36 1 -0.0129 -6.3389 4.9849 37 1 0.1589 -5.8234 3.2872 38 1 1.0366 -8.0310 2.6619 39 1 -0.5097 -8.2467 3.5173 40 1 1.1768 -9.8428 4.3635 41 1 0.7334 -8.6743 5.6305 42 1 6.3301 -7.9568 5.6618 43 1 3.7973 -6.5749 5.2405 44 1 2.3555 -6.8258 6.2561 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328836018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:50 Heat of formation + Delta-G solvation = -63.510726 kcal Electronic energy + Delta-G solvation = -24017.524643 eV Core-core repulsion = 20548.877261 eV Total energy + Delta-G solvation = -3468.647382 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93146 -40.00206 -38.94869 -38.50140 -35.77404 -35.02034 -33.44938 -31.56884 -29.75130 -28.67909 -27.24844 -26.59537 -23.96411 -23.47833 -22.50176 -21.68249 -20.97462 -20.09137 -18.74433 -18.18621 -17.98688 -17.32891 -16.97523 -16.51550 -16.35777 -15.68106 -15.62081 -15.24237 -14.84150 -14.65718 -14.60731 -14.44937 -14.21952 -13.92143 -13.79362 -13.48056 -13.11027 -12.98851 -12.87730 -12.50017 -12.43733 -12.28803 -12.16181 -12.13627 -11.75542 -11.63512 -11.15815 -11.05308 -10.98339 -10.85306 -10.53899 -10.27510 -10.07066 -9.54431 -8.11109 -6.28047 0.35720 1.33678 1.42701 1.43202 1.53441 2.13799 2.41437 2.53869 2.84122 3.16826 3.33291 3.60820 3.89582 3.91557 4.12812 4.17171 4.23471 4.33625 4.45191 4.55660 4.59552 4.66385 4.70500 4.79807 4.82396 4.93099 4.97678 4.98982 5.06201 5.12305 5.19815 5.23174 5.24800 5.28786 5.36418 5.45010 5.49889 5.57471 5.84552 5.94258 6.00300 6.30374 6.43298 6.72689 6.83935 6.98593 7.41802 8.92607 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027103 B = 0.003292 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.856882 B = 8502.593067 C = 9250.017901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.133 4.133 3 H 0.118 0.882 4 C -0.172 4.172 5 C -0.180 4.180 6 H 0.116 0.884 7 C 0.151 3.849 8 N -0.686 5.686 9 C 0.518 3.482 10 O -0.524 6.524 11 C 0.485 3.515 12 O -0.557 6.557 13 N -0.576 5.576 14 C 0.071 3.929 15 C -0.126 4.126 16 C -0.107 4.107 17 C 0.039 3.961 18 H -0.011 1.011 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.263 1.263 27 C 0.120 3.880 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.261 0.739 43 H 0.085 0.915 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 14.778 -10.662 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.152 4.152 3 H 0.136 0.864 4 C -0.209 4.209 5 C -0.198 4.198 6 H 0.134 0.866 7 C 0.029 3.971 8 N -0.338 5.338 9 C 0.300 3.700 10 O -0.403 6.403 11 C 0.267 3.733 12 O -0.437 6.437 13 N -0.308 5.308 14 C -0.050 4.050 15 C -0.163 4.163 16 C -0.144 4.144 17 C 0.020 3.980 18 H 0.007 0.993 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.552 5.552 23 Si 0.784 3.216 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.188 1.188 27 C -0.001 4.001 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.712 14.879 -10.621 21.189 hybrid contribution 1.544 -0.694 0.823 1.882 sum -9.168 14.185 -9.798 19.527 Atomic orbital electron populations 1.21436 0.92267 1.02677 1.02338 1.22488 0.95895 0.94472 1.02311 0.86364 1.23326 1.03262 1.01657 0.92633 1.22496 1.01807 1.00421 0.95104 0.86568 1.21108 0.92301 0.89317 0.94379 1.45842 1.12498 1.28786 1.46717 1.19913 0.87620 0.82285 0.80223 1.90447 1.14628 1.71325 1.63852 1.20541 0.87781 0.83300 0.81655 1.90745 1.16236 1.74662 1.62027 1.48464 1.14505 1.24961 1.42871 1.23016 0.80000 0.97636 1.04323 1.22001 1.01747 0.94386 0.98216 1.21552 0.95587 0.98776 0.98519 1.18896 0.92911 0.91248 0.94949 0.99254 1.21488 0.95260 1.16571 1.24103 0.91922 1.25884 0.98403 0.96553 0.98031 1.70061 1.09563 1.32360 1.43244 0.85541 0.78194 0.78606 0.79235 1.20170 1.21180 1.18755 1.21953 0.96427 0.92271 0.89457 0.92025 0.90847 0.92468 0.87728 0.88435 0.90694 0.90383 0.74585 0.90822 0.84456 0.93293 0.88120 0.92706 0.92385 0.92976 0.89666 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.20 71.98 0.66 -0.76 16 2 C -0.13 -1.56 6.41 -10.77 -0.07 -1.62 16 3 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.17 -2.19 9.83 30.62 0.30 -1.89 16 5 C -0.18 -2.64 5.84 -10.80 -0.06 -2.71 16 6 H 0.12 1.66 8.04 -2.38 -0.02 1.64 16 7 C 0.15 2.89 5.03 86.38 0.43 3.32 16 8 N -0.69 -17.46 5.55 -464.41 -2.58 -20.04 16 9 C 0.52 16.97 7.74 87.27 0.68 17.64 16 10 O -0.52 -17.24 13.18 -3.25 -0.04 -17.28 16 11 C 0.48 20.18 7.73 87.27 0.67 20.85 16 12 O -0.56 -26.82 15.93 -3.24 -0.05 -26.87 16 13 N -0.58 -24.61 2.97 -819.64 -2.43 -27.04 16 14 C 0.07 2.45 6.01 86.51 0.52 2.97 16 15 C -0.13 -4.20 6.10 30.82 0.19 -4.02 16 16 C -0.11 -4.32 5.10 30.62 0.16 -4.16 16 17 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 18 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 19 C -0.54 -29.59 8.56 25.60 0.22 -29.37 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 21 C 0.01 0.61 5.30 84.66 0.45 1.06 16 22 N -0.91 -54.84 11.39 21.45 0.24 -54.60 16 23 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.12 6.09 5.41 86.36 0.47 6.55 16 28 H 0.06 0.70 7.84 -2.39 -0.02 0.68 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.65 7.90 -2.39 -0.02 0.64 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.26 7.94 -2.39 -0.02 1.24 16 33 H 0.07 1.44 7.88 -2.39 -0.02 1.42 16 34 H 0.08 1.50 7.77 -2.39 -0.02 1.48 16 35 H 0.42 10.27 7.89 -92.70 -0.73 9.54 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.14 4.51 4.30 -48.56 -0.21 4.30 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.09 5.02 5.12 -2.39 -0.01 5.00 16 44 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -67.56 352.56 1.83 -65.74 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.07 Total: 24.18 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.59 Total: 9.86 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.76 Total: -101.68 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.09 Total: -44.15 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.56 1.83 -65.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328836018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.228 kcal (2) G-P(sol) polarization free energy of solvation -67.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds