Wall clock time and date at job start Tue Mar 31 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.55314 * 2 1 4 4 C 1.53069 * 117.49600 * 214.26764 * 2 1 3 5 5 C 1.52997 * 59.98514 * 252.51810 * 4 2 1 6 6 H 1.08999 * 117.49907 * 107.50433 * 5 4 2 7 7 C 1.53005 * 117.49727 * 252.49441 * 5 4 2 8 8 N 1.46490 * 109.47393 * 243.74753 * 7 5 4 9 9 C 1.34776 * 120.00141 * 180.02562 * 8 7 5 10 10 O 1.21343 * 119.99934 * 0.02562 * 9 8 7 11 11 C 1.49455 * 120.00138 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99811 * 353.54825 * 11 9 8 13 13 N 1.34772 * 119.99891 * 173.81657 * 11 9 8 14 14 C 1.46931 * 120.63052 * 3.85435 * 13 11 9 15 15 C 1.52764 * 109.00661 * 233.58260 * 14 13 11 16 16 C 1.53041 * 109.38278 * 305.58913 * 15 14 13 17 17 C 1.53039 * 109.53775 * 61.24409 * 16 15 14 18 18 H 1.08990 * 109.52778 * 58.59981 * 17 16 15 19 19 C 1.50703 * 109.49391 * 178.68370 * 17 16 15 20 20 H 1.07999 * 120.00578 * 359.83290 * 19 17 16 21 21 C 1.37884 * 119.99821 * 179.83387 * 19 17 16 22 22 N 1.31519 * 119.99697 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99941 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47077 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47072 * 120.00221 * 23 21 19 26 26 H 1.48504 * 109.46832 * 240.00086 * 23 21 19 27 27 C 1.46924 * 120.63022 * 184.13643 * 13 11 9 28 28 H 1.09002 * 109.47402 * 274.33436 * 1 2 3 29 29 H 1.09001 * 109.47072 * 34.33292 * 1 2 3 30 30 H 1.08993 * 109.47315 * 154.32767 * 1 2 3 31 31 H 1.08995 * 117.51617 * 145.04112 * 4 2 1 32 32 H 1.09010 * 117.49509 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.46460 * 123.74732 * 7 5 4 34 34 H 1.08998 * 109.47220 * 3.75193 * 7 5 4 35 35 H 0.97008 * 120.00398 * 359.97438 * 8 7 5 36 36 H 1.08993 * 109.58850 * 353.41389 * 14 13 11 37 37 H 1.08998 * 109.58670 * 113.84344 * 14 13 11 38 38 H 1.08999 * 109.56533 * 185.55324 * 15 14 13 39 39 H 1.08998 * 109.38491 * 65.51459 * 15 14 13 40 40 H 1.09000 * 109.46047 * 301.21661 * 16 15 14 41 41 H 1.09007 * 109.45929 * 181.26157 * 16 15 14 42 42 H 0.96999 * 119.99212 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.58601 * 246.15516 * 27 13 11 44 44 H 1.09001 * 109.58834 * 6.57505 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2367 -1.1221 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6111 -1.8578 1.2693 7 6 3.5489 -0.7755 1.4719 8 7 4.0094 -1.9345 2.2404 9 6 5.1533 -1.8616 2.9494 10 8 5.8015 -0.8358 2.9515 11 6 5.6228 -3.0439 3.7339 12 8 4.9188 -4.0277 3.8284 13 7 6.8258 -3.0152 4.3409 14 6 7.6504 -1.7994 4.3114 15 6 9.0381 -2.1523 3.7789 16 6 9.6275 -3.2920 4.6131 17 6 8.7338 -4.5286 4.4940 18 1 8.6551 -4.8218 3.4473 19 6 9.3322 -5.6600 5.2897 20 1 10.2588 -5.5131 5.8247 21 6 8.6965 -6.8827 5.3348 22 7 7.5679 -7.0614 4.6837 23 14 9.4385 -8.2853 6.3205 24 1 10.7018 -7.8304 6.9549 25 1 8.4811 -8.7116 7.3726 26 1 9.7228 -9.4290 5.4169 27 6 7.3403 -4.2009 5.0394 28 1 -0.3634 0.0777 1.0247 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9261 -0.4452 31 1 3.1719 -0.8771 -1.2678 32 1 1.6113 -1.8597 -1.2676 33 1 3.3885 0.0666 2.1452 34 1 4.3017 -0.5091 0.7299 35 1 3.4907 -2.7542 2.2396 36 1 7.1874 -1.0596 3.6585 37 1 7.7409 -1.3947 5.3194 38 1 9.6874 -1.2793 3.8453 39 1 8.9571 -2.4672 2.7385 40 1 9.6858 -2.9851 5.6574 41 1 10.6269 -3.5297 4.2484 42 1 7.1210 -7.9218 4.7152 43 1 7.4050 -3.9961 6.1081 44 1 6.6726 -5.0451 4.8669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328836022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:56 Heat of formation + Delta-G solvation = -40.896787 kcal Electronic energy + Delta-G solvation = -23908.915914 eV Core-core repulsion = 20441.249146 eV Total energy + Delta-G solvation = -3467.666768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51866 -38.74168 -37.91136 -36.84073 -34.61400 -33.18699 -31.71724 -29.74788 -29.53656 -27.23798 -25.40239 -24.91483 -22.51414 -21.78389 -21.42728 -21.00253 -19.93227 -18.77157 -17.27383 -16.63893 -16.25259 -15.84265 -15.46352 -15.28622 -14.62659 -14.53077 -14.31373 -13.92946 -13.75986 -13.47257 -13.26489 -13.06272 -12.80354 -12.58227 -12.53719 -12.10155 -11.79960 -11.75714 -11.66610 -11.41672 -10.99376 -10.66232 -10.44147 -10.41594 -10.27594 -10.26358 -10.02751 -9.86034 -9.21340 -9.19254 -9.10762 -8.49743 -8.39482 -7.81275 -6.01865 -4.09926 1.81358 2.66922 3.29424 3.37709 3.39109 3.41275 3.67113 3.98027 4.26678 4.41945 4.47892 4.57621 4.74224 4.90212 4.98995 5.23121 5.28715 5.43066 5.47407 5.49378 5.52205 5.64814 5.68850 5.71809 5.81632 5.90620 5.96618 6.11415 6.27860 6.40386 6.61407 6.64983 6.78273 6.87698 7.00127 7.06391 7.19387 7.26123 7.60327 7.83719 7.96016 8.02034 8.18159 8.36055 8.59771 8.94401 9.55637 11.03707 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024685 B = 0.003254 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.014517 B = 8603.159431 C = 9407.193356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 H 0.107 0.893 4 C -0.171 4.171 5 C -0.168 4.168 6 H 0.113 0.887 7 C 0.149 3.851 8 N -0.701 5.701 9 C 0.512 3.488 10 O -0.517 6.517 11 C 0.494 3.506 12 O -0.525 6.525 13 N -0.565 5.565 14 C 0.046 3.954 15 C -0.130 4.130 16 C -0.113 4.113 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.518 4.518 20 H 0.060 0.940 21 C 0.061 3.939 22 N -0.882 5.882 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.107 3.893 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.414 0.586 36 H 0.148 0.852 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 14.110 -8.337 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 H 0.125 0.875 4 C -0.208 4.208 5 C -0.187 4.187 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.354 5.354 9 C 0.295 3.705 10 O -0.395 6.395 11 C 0.275 3.725 12 O -0.403 6.403 13 N -0.297 5.297 14 C -0.076 4.076 15 C -0.169 4.169 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.557 4.557 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.520 5.520 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.012 4.012 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.251 0.749 36 H 0.164 0.836 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.853 14.167 -8.304 19.683 hybrid contribution 0.268 -1.261 0.586 1.416 sum -10.585 12.906 -7.717 18.389 Atomic orbital electron populations 1.21378 0.92566 1.02085 1.02070 1.22398 0.95431 0.94602 1.03874 0.87489 1.23289 1.02826 1.01245 0.93449 1.22580 0.98421 1.03124 0.94569 0.86875 1.20968 0.93613 0.88203 0.94658 1.45816 1.24224 1.17338 1.48012 1.20791 0.81010 0.88912 0.79761 1.90248 1.53275 1.32477 1.63473 1.19735 0.83605 0.87235 0.81939 1.90759 1.54384 1.33560 1.61579 1.48454 1.15571 1.15571 1.50116 1.23116 0.92531 0.88564 1.03363 1.21828 0.95900 0.98950 1.00172 1.21666 0.99270 0.95827 0.98335 1.18977 0.89905 0.91561 0.97455 0.95279 1.21137 1.08161 0.95255 1.31105 0.92193 1.25070 0.94948 0.98692 0.95422 1.69888 1.16316 1.24272 1.41534 0.86511 0.79224 0.82211 0.79926 1.19770 1.20954 1.21006 1.22491 0.99683 0.85507 0.93561 0.92025 0.92016 0.92421 0.88438 0.88474 0.90646 0.90855 0.74916 0.83589 0.92542 0.92217 0.92526 0.93216 0.93111 0.92705 0.93356 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.19 37.16 0.38 -0.36 16 2 C -0.14 -1.00 6.13 -90.59 -0.56 -1.56 16 3 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.17 -1.26 9.83 -26.70 -0.26 -1.52 16 5 C -0.17 -1.37 5.57 -90.62 -0.50 -1.88 16 6 H 0.11 0.90 8.04 -51.93 -0.42 0.49 16 7 C 0.15 1.52 5.96 -4.04 -0.02 1.50 16 8 N -0.70 -9.16 5.55 -60.73 -0.34 -9.50 16 9 C 0.51 8.54 7.81 -11.58 -0.09 8.45 16 10 O -0.52 -8.86 13.01 5.50 0.07 -8.79 16 11 C 0.49 10.11 7.76 -11.58 -0.09 10.02 16 12 O -0.53 -12.08 15.92 5.50 0.09 -12.00 16 13 N -0.57 -12.00 2.98 -173.54 -0.52 -12.52 16 14 C 0.05 0.83 6.24 -3.93 -0.02 0.81 16 15 C -0.13 -2.35 6.06 -26.83 -0.16 -2.51 16 16 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 18 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.52 -14.11 8.56 -34.44 -0.29 -14.41 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 22 N -0.88 -25.52 11.39 55.43 0.63 -24.89 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 C 0.11 2.64 5.39 -3.71 -0.02 2.62 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 31 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.10 0.66 8.05 -51.92 -0.42 0.24 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.41 5.16 7.89 -40.82 -0.32 4.84 16 36 H 0.15 2.59 3.72 -57.17 -0.21 2.37 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.12 3.46 5.15 -51.93 -0.27 3.20 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -30.48 354.12 -8.90 -39.38 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.07 Total: 5.70 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.09 Total: 1.07 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.22 Total: -46.91 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.16 Total: -20.79 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.48 -8.90 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328836022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.521 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds