Wall clock time and date at job start Tue Mar 31 2020 06:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 115.55314 * 2 1 4 4 C 1.53069 * 117.49600 * 214.26764 * 2 1 3 5 5 C 1.52997 * 59.98514 * 252.51810 * 4 2 1 6 6 H 1.08999 * 117.49907 * 107.50433 * 5 4 2 7 7 C 1.53005 * 117.49727 * 252.49441 * 5 4 2 8 8 N 1.46490 * 109.47393 * 243.74753 * 7 5 4 9 9 C 1.34776 * 120.00141 * 180.02562 * 8 7 5 10 10 O 1.21343 * 119.99934 * 0.02562 * 9 8 7 11 11 C 1.49455 * 120.00138 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99811 * 353.54825 * 11 9 8 13 13 N 1.34772 * 119.99891 * 173.81657 * 11 9 8 14 14 C 1.46931 * 120.63052 * 3.85435 * 13 11 9 15 15 C 1.52764 * 109.00661 * 233.58260 * 14 13 11 16 16 C 1.53041 * 109.38278 * 305.58913 * 15 14 13 17 17 C 1.53039 * 109.53775 * 61.24409 * 16 15 14 18 18 H 1.08990 * 109.52778 * 58.59981 * 17 16 15 19 19 C 1.50703 * 109.49391 * 178.68370 * 17 16 15 20 20 H 1.07999 * 120.00578 * 359.83290 * 19 17 16 21 21 C 1.37884 * 119.99821 * 179.83387 * 19 17 16 22 22 N 1.31519 * 119.99697 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 119.99941 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47077 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47072 * 120.00221 * 23 21 19 26 26 H 1.48504 * 109.46832 * 240.00086 * 23 21 19 27 27 C 1.46924 * 120.63022 * 184.13643 * 13 11 9 28 28 H 1.09002 * 109.47402 * 274.33436 * 1 2 3 29 29 H 1.09001 * 109.47072 * 34.33292 * 1 2 3 30 30 H 1.08993 * 109.47315 * 154.32767 * 1 2 3 31 31 H 1.08995 * 117.51617 * 145.04112 * 4 2 1 32 32 H 1.09010 * 117.49509 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.46460 * 123.74732 * 7 5 4 34 34 H 1.08998 * 109.47220 * 3.75193 * 7 5 4 35 35 H 0.97008 * 120.00398 * 359.97438 * 8 7 5 36 36 H 1.08993 * 109.58850 * 353.41389 * 14 13 11 37 37 H 1.08998 * 109.58670 * 113.84344 * 14 13 11 38 38 H 1.08999 * 109.56533 * 185.55324 * 15 14 13 39 39 H 1.08998 * 109.38491 * 65.51459 * 15 14 13 40 40 H 1.09000 * 109.46047 * 301.21661 * 16 15 14 41 41 H 1.09007 * 109.45929 * 181.26157 * 16 15 14 42 42 H 0.96999 * 119.99212 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.58601 * 246.15516 * 27 13 11 44 44 H 1.09001 * 109.58834 * 6.57505 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2367 -1.1221 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6111 -1.8578 1.2693 7 6 3.5489 -0.7755 1.4719 8 7 4.0094 -1.9345 2.2404 9 6 5.1533 -1.8616 2.9494 10 8 5.8015 -0.8358 2.9515 11 6 5.6228 -3.0439 3.7339 12 8 4.9188 -4.0277 3.8284 13 7 6.8258 -3.0152 4.3409 14 6 7.6504 -1.7994 4.3114 15 6 9.0381 -2.1523 3.7789 16 6 9.6275 -3.2920 4.6131 17 6 8.7338 -4.5286 4.4940 18 1 8.6551 -4.8218 3.4473 19 6 9.3322 -5.6600 5.2897 20 1 10.2588 -5.5131 5.8247 21 6 8.6965 -6.8827 5.3348 22 7 7.5679 -7.0614 4.6837 23 14 9.4385 -8.2853 6.3205 24 1 10.7018 -7.8304 6.9549 25 1 8.4811 -8.7116 7.3726 26 1 9.7228 -9.4290 5.4169 27 6 7.3403 -4.2009 5.0394 28 1 -0.3634 0.0777 1.0247 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9261 -0.4452 31 1 3.1719 -0.8771 -1.2678 32 1 1.6113 -1.8597 -1.2676 33 1 3.3885 0.0666 2.1452 34 1 4.3017 -0.5091 0.7299 35 1 3.4907 -2.7542 2.2396 36 1 7.1874 -1.0596 3.6585 37 1 7.7409 -1.3947 5.3194 38 1 9.6874 -1.2793 3.8453 39 1 8.9571 -2.4672 2.7385 40 1 9.6858 -2.9851 5.6574 41 1 10.6269 -3.5297 4.2484 42 1 7.1210 -7.9218 4.7152 43 1 7.4050 -3.9961 6.1081 44 1 6.6726 -5.0451 4.8669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328836022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:55 Heat of formation + Delta-G solvation = -59.989950 kcal Electronic energy + Delta-G solvation = -23909.743856 eV Core-core repulsion = 20441.249146 eV Total energy + Delta-G solvation = -3468.494710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96855 -39.97069 -38.89053 -38.53417 -35.85038 -35.03780 -33.45655 -31.59108 -30.25380 -28.26283 -27.16084 -26.52428 -23.95897 -23.48180 -22.20843 -21.89066 -21.17744 -20.34385 -18.86050 -18.19797 -17.93002 -17.16020 -16.90598 -16.46351 -16.43777 -15.70729 -15.50699 -15.27270 -15.01884 -14.75018 -14.62423 -14.45811 -14.07634 -13.93971 -13.81642 -13.48781 -13.09679 -13.03506 -12.90492 -12.46271 -12.37159 -12.30917 -12.24253 -12.15532 -11.71943 -11.60146 -11.16336 -11.06604 -10.99563 -10.86400 -10.55970 -10.25485 -9.95813 -9.55680 -8.12743 -6.29152 0.34975 1.32288 1.41438 1.42260 1.54110 2.15211 2.40728 2.53364 2.83553 3.15597 3.30592 3.58757 3.88795 3.99850 4.15697 4.19416 4.22201 4.34343 4.46806 4.53091 4.58535 4.67984 4.71192 4.78108 4.82040 4.93188 4.97269 4.98433 5.05404 5.15079 5.21712 5.23110 5.23915 5.29079 5.40457 5.45858 5.55207 5.56944 5.83338 5.93275 5.99151 6.29255 6.44454 6.73892 6.83176 6.98134 7.40680 8.91450 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024685 B = 0.003254 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.014517 B = 8603.159431 C = 9407.193356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 H 0.114 0.886 4 C -0.172 4.172 5 C -0.177 4.177 6 H 0.115 0.885 7 C 0.149 3.851 8 N -0.684 5.684 9 C 0.521 3.479 10 O -0.520 6.520 11 C 0.484 3.516 12 O -0.560 6.560 13 N -0.573 5.573 14 C 0.045 3.955 15 C -0.123 4.123 16 C -0.107 4.107 17 C 0.038 3.962 18 H -0.010 1.010 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.010 3.990 22 N -0.915 5.915 23 Si 0.960 3.040 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.120 3.880 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.161 0.839 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.043 0.957 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 15.885 -8.632 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 H 0.132 0.868 4 C -0.209 4.209 5 C -0.196 4.196 6 H 0.133 0.867 7 C 0.027 3.973 8 N -0.336 5.336 9 C 0.303 3.697 10 O -0.399 6.399 11 C 0.267 3.733 12 O -0.440 6.440 13 N -0.304 5.304 14 C -0.075 4.075 15 C -0.161 4.161 16 C -0.145 4.145 17 C 0.019 3.981 18 H 0.008 0.992 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.553 5.553 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.002 4.002 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.255 0.745 36 H 0.176 0.824 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.815 15.980 -8.621 21.134 hybrid contribution 0.197 -1.792 0.627 1.909 sum -10.618 14.188 -7.995 19.441 Atomic orbital electron populations 1.21407 0.91819 1.02622 1.02334 1.22496 0.95994 0.94503 1.02322 0.86801 1.23362 1.03134 1.01685 0.92746 1.22511 0.97690 1.04369 0.95005 0.86743 1.21166 0.94632 0.86970 0.94500 1.45832 1.22634 1.18430 1.46672 1.19926 0.82192 0.87369 0.80257 1.90219 1.53776 1.31869 1.64019 1.20476 0.83022 0.88175 0.81625 1.90731 1.55294 1.35296 1.62636 1.48487 1.16405 1.15507 1.50035 1.23360 0.92237 0.87305 1.04583 1.21799 0.96265 0.99178 0.98848 1.21566 0.98553 0.94918 0.99463 1.18913 0.91205 0.93276 0.94676 0.99191 1.21514 1.08311 0.96300 1.31162 0.91939 1.25894 0.95256 1.01339 0.96424 1.70061 1.17636 1.24660 1.42969 0.85473 0.78691 0.78916 0.78390 1.18640 1.20708 1.20768 1.21960 0.98720 0.85961 0.93526 0.91974 0.91024 0.92323 0.88340 0.87943 0.90081 0.90573 0.74533 0.82363 0.91155 0.88266 0.93447 0.92501 0.92767 0.92950 0.93854 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.19 71.98 0.73 -0.50 16 2 C -0.13 -1.57 6.13 -10.77 -0.07 -1.64 16 3 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.17 -2.22 9.83 30.62 0.30 -1.92 16 5 C -0.18 -2.58 5.57 -10.79 -0.06 -2.64 16 6 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 7 C 0.15 2.78 5.96 86.38 0.51 3.30 16 8 N -0.68 -17.21 5.55 -464.42 -2.58 -19.78 16 9 C 0.52 16.96 7.81 87.27 0.68 17.64 16 10 O -0.52 -16.90 13.01 -3.23 -0.04 -16.94 16 11 C 0.48 20.16 7.76 87.27 0.68 20.84 16 12 O -0.56 -26.75 15.92 -3.24 -0.05 -26.80 16 13 N -0.57 -24.60 2.98 -821.31 -2.45 -27.05 16 14 C 0.05 1.58 6.24 86.22 0.54 2.11 16 15 C -0.12 -4.19 6.06 30.53 0.19 -4.01 16 16 C -0.11 -4.39 5.11 30.62 0.16 -4.24 16 17 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 18 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 19 C -0.53 -29.63 8.56 25.60 0.22 -29.41 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.58 5.30 84.66 0.45 1.03 16 22 N -0.91 -54.83 11.39 21.45 0.24 -54.58 16 23 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 C 0.12 6.10 5.39 86.36 0.47 6.57 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.57 7.90 -2.39 -0.02 0.55 16 31 H 0.10 1.26 8.03 -2.39 -0.02 1.24 16 32 H 0.10 1.22 8.05 -2.38 -0.02 1.20 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.43 7.88 -2.39 -0.02 1.41 16 35 H 0.42 10.20 7.89 -92.70 -0.73 9.47 16 36 H 0.16 5.26 3.72 -85.30 -0.32 4.95 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.09 5.04 5.15 -2.39 -0.01 5.03 16 Total: -1.00 -67.40 354.12 1.88 -65.52 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.04 Total: 24.38 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.77 Total: 9.09 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -4.78 Total: -101.41 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.09 Total: -43.74 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.40 1.88 -65.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328836022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.529 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds