Wall clock time and date at job start Tue Mar 31 2020 07:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46708 * 2 1 4 4 C 1.50697 * 109.46865 * 240.00045 * 2 1 3 5 5 O 1.21287 * 120.00142 * 334.53596 * 4 2 1 6 6 N 1.34777 * 119.99980 * 154.53241 * 4 2 1 7 7 C 1.46925 * 120.62863 * 5.25317 * 6 4 2 8 8 C 1.53620 * 108.54210 * 126.36807 * 7 6 4 9 9 C 1.53046 * 109.24298 * 54.85152 * 8 7 6 10 10 C 1.53040 * 109.54069 * 298.51204 * 9 8 7 11 11 H 1.08995 * 109.52292 * 301.39892 * 10 9 8 12 12 C 1.50702 * 109.49642 * 181.31502 * 10 9 8 13 13 H 1.07999 * 119.99769 * 240.15957 * 12 10 9 14 14 C 1.37874 * 120.00237 * 60.16272 * 12 10 9 15 15 N 1.31524 * 119.99797 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00212 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47092 * 89.99959 * 16 14 12 18 18 H 1.48497 * 109.47193 * 210.00124 * 16 14 12 19 19 H 1.48493 * 109.46908 * 330.00195 * 16 14 12 20 20 C 1.46930 * 120.62705 * 185.53053 * 6 4 2 21 21 C 1.52998 * 109.47229 * 120.00162 * 2 1 3 22 22 H 1.08996 * 110.21510 * 180.47243 * 21 2 1 23 23 C 1.54481 * 110.24587 * 302.49409 * 21 2 1 24 24 C 1.54630 * 101.76334 * 144.41640 * 23 21 2 25 25 C 1.51277 * 104.19884 * 335.20356 * 24 23 21 26 26 O 1.21278 * 124.94387 * 196.23648 * 25 24 23 27 27 N 1.34421 * 110.11570 * 16.24995 * 25 24 23 28 28 H 1.08997 * 109.47143 * 176.35209 * 1 2 3 29 29 H 1.09004 * 109.46465 * 296.34674 * 1 2 3 30 30 H 1.08992 * 109.47300 * 56.34719 * 1 2 3 31 31 H 1.09000 * 109.58212 * 246.20019 * 7 6 4 32 32 H 1.08997 * 109.58666 * 6.62171 * 7 6 4 33 33 H 1.09000 * 109.63484 * 294.86626 * 8 7 6 34 34 H 1.08998 * 109.43562 * 174.72367 * 8 7 6 35 35 H 1.08997 * 109.45923 * 178.48791 * 9 8 7 36 36 H 1.09006 * 109.44483 * 58.52880 * 9 8 7 37 37 H 0.96995 * 119.99685 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.58685 * 353.37457 * 20 6 4 39 39 H 1.09005 * 109.58166 * 113.65911 * 20 6 4 40 40 H 1.08996 * 110.97165 * 262.53973 * 23 21 2 41 41 H 1.09007 * 110.96940 * 26.30045 * 23 21 2 42 42 H 1.09000 * 110.48484 * 216.52320 * 24 23 21 43 43 H 1.08998 * 110.59498 * 93.93982 * 24 23 21 44 44 H 0.96995 * 124.35396 * 180.42562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3403 -1.5454 -1.7736 6 7 3.2504 -0.4178 -1.7275 7 6 4.1463 0.5056 -1.0179 8 6 5.4983 -0.1922 -0.8053 9 6 6.0345 -0.6750 -2.1550 10 6 5.0600 -1.6880 -2.7603 11 1 4.9351 -2.5271 -2.0759 12 6 5.6045 -2.1869 -4.0739 13 1 5.0418 -2.0372 -4.9835 14 6 6.8210 -2.8345 -4.1145 15 7 7.5065 -3.0165 -3.0069 16 14 7.4957 -3.4536 -5.7427 17 1 8.3206 -2.3915 -6.3726 18 1 8.3339 -4.6563 -5.5060 19 1 6.3690 -3.8050 -6.6438 20 6 3.7052 -1.0115 -2.9922 21 6 2.0401 -0.7213 1.2492 22 1 3.1299 -0.7210 1.2657 23 6 1.4842 -0.0444 2.5217 24 6 1.2711 -1.2575 3.4566 25 6 1.0987 -2.4273 2.5131 26 8 0.6370 -3.5058 2.8208 27 7 1.5319 -2.0977 1.2840 28 1 -0.3633 -1.0256 -0.0654 29 1 -0.3632 0.4561 0.9210 30 1 -0.3633 0.5694 -0.8554 31 1 4.2872 1.4077 -1.6133 32 1 3.7123 0.7664 -0.0527 33 1 5.3695 -1.0451 -0.1390 34 1 6.2042 0.5114 -0.3641 35 1 7.0065 -1.1470 -2.0118 36 1 6.1396 0.1753 -2.8290 37 1 8.3621 -3.4724 -3.0354 38 1 2.9801 -1.7519 -3.3299 39 1 3.8085 -0.2309 -3.7459 40 1 2.2108 0.6501 2.9433 41 1 0.5399 0.4593 2.3148 42 1 0.3749 -1.1200 4.0616 43 1 2.1419 -1.4073 4.0949 44 1 1.5111 -2.6929 0.5184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329509043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:00 Heat of formation + Delta-G solvation = -84.176289 kcal Electronic energy + Delta-G solvation = -25040.404625 eV Core-core repulsion = 21570.861117 eV Total energy + Delta-G solvation = -3469.543508 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.94429 -39.46678 -37.17337 -36.55789 -33.66095 -32.75271 -31.41895 -31.38139 -30.20497 -27.15115 -25.63281 -25.07200 -23.52735 -21.81196 -21.21642 -20.65385 -19.64502 -18.29378 -17.31981 -16.91596 -16.82465 -16.24096 -15.33025 -15.13599 -14.71205 -14.44826 -14.08609 -13.83791 -13.64096 -13.48591 -13.41488 -12.85061 -12.81160 -12.77331 -12.38554 -12.15474 -12.02956 -11.98622 -11.61095 -11.32447 -11.02686 -11.01470 -10.87406 -10.76370 -10.38271 -10.01500 -9.89772 -9.87560 -9.54628 -9.32982 -9.13740 -8.88547 -8.43778 -7.99577 -6.06683 -4.13951 2.57490 2.85464 3.26579 3.30605 3.34049 3.36591 3.42170 4.12108 4.21879 4.38790 4.42405 4.68183 4.80795 4.87558 4.99326 5.08434 5.22435 5.26136 5.38732 5.42624 5.50238 5.51506 5.65551 5.67025 5.76287 5.87337 6.01689 6.18684 6.23779 6.30029 6.39090 6.57601 6.71085 6.77041 6.87648 7.04962 7.07975 7.25557 7.63540 7.83275 7.91709 8.01427 8.24108 8.31406 8.51586 8.89562 9.51469 10.98883 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021692 B = 0.004093 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.510945 B = 6838.776080 C = 7025.120908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 H 0.105 0.895 4 C 0.509 3.491 5 O -0.545 6.545 6 N -0.601 5.601 7 C 0.105 3.895 8 C -0.134 4.134 9 C -0.113 4.113 10 C 0.041 3.959 11 H 0.029 0.971 12 C -0.515 4.515 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.116 3.884 21 C 0.139 3.861 22 H 0.090 0.910 23 C -0.132 4.132 24 C -0.156 4.156 25 C 0.518 3.482 26 O -0.540 6.540 27 N -0.718 5.718 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 12.313 11.435 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 H 0.123 0.877 4 C 0.296 3.704 5 O -0.423 6.423 6 N -0.332 5.332 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.151 4.151 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.005 4.005 21 C 0.032 3.968 22 H 0.108 0.892 23 C -0.170 4.170 24 C -0.196 4.196 25 C 0.304 3.696 26 O -0.417 6.417 27 N -0.374 5.374 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.826 11.289 11.447 18.340 hybrid contribution 0.726 -0.427 -1.302 1.551 sum -8.100 10.862 10.145 16.927 Atomic orbital electron populations 1.21700 0.92223 1.03716 1.01672 1.21686 0.98755 1.00718 0.93272 0.87711 1.20393 0.81522 0.83101 0.85417 1.90682 1.56671 1.33613 1.61378 1.48349 1.14703 1.45491 1.24688 1.21912 0.91516 0.92406 0.95928 1.22080 0.94637 0.99494 1.01029 1.21636 1.03324 0.98182 0.91931 1.18951 0.88492 0.93517 0.96806 0.95308 1.21068 1.04224 1.36866 0.93251 0.92507 1.24929 0.96828 0.95601 0.96378 1.69868 1.14169 1.42345 1.26359 0.86579 0.79003 0.78395 0.83966 1.20670 1.21213 1.19845 1.22026 0.98968 0.97151 0.82384 1.21659 0.98960 0.81853 0.94283 0.89233 1.22842 1.03244 0.97342 0.93568 1.22346 1.05134 0.93717 0.98378 1.20842 0.76331 0.88682 0.83741 1.90752 1.45737 1.25753 1.79463 1.46382 1.63248 1.15296 1.12486 0.91147 0.91734 0.92166 0.91764 0.91056 0.92402 0.92377 0.88621 0.94550 0.92941 0.90291 0.92650 0.88811 0.88983 0.88076 0.87741 0.74216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.38 37.16 0.31 -1.10 16 2 C -0.12 -1.31 1.81 -91.77 -0.17 -1.48 16 3 H 0.10 0.86 6.74 -51.93 -0.35 0.51 16 4 C 0.51 8.10 6.24 -10.99 -0.07 8.03 16 5 O -0.55 -10.75 14.97 5.55 0.08 -10.67 16 6 N -0.60 -10.00 2.97 -172.50 -0.51 -10.51 16 7 C 0.11 1.41 6.01 -3.49 -0.02 1.39 16 8 C -0.13 -2.16 6.10 -26.39 -0.16 -2.32 16 9 C -0.11 -2.40 4.96 -26.69 -0.13 -2.53 16 10 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.52 -13.67 8.56 -34.44 -0.29 -13.97 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 16 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.12 2.37 5.66 -3.71 -0.02 2.35 16 21 C 0.14 1.38 3.00 -67.01 -0.20 1.18 16 22 H 0.09 0.90 7.17 -51.93 -0.37 0.53 16 23 C -0.13 -0.86 6.51 -25.10 -0.16 -1.03 16 24 C -0.16 -1.29 6.86 -26.74 -0.18 -1.48 16 25 C 0.52 7.01 8.43 -10.86 -0.09 6.91 16 26 O -0.54 -9.73 18.03 5.56 0.10 -9.63 16 27 N -0.72 -9.45 5.03 -52.76 -0.27 -9.71 16 28 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 29 H 0.06 0.49 5.85 -51.93 -0.30 0.19 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.69 4.82 -51.93 -0.25 0.44 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 2.35 6.05 -51.93 -0.31 2.03 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 1.77 7.00 -51.93 -0.36 1.41 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.51 5.61 -51.93 -0.29 0.22 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.42 6.51 8.06 -40.82 -0.33 6.18 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -32.18 339.34 -8.09 -40.27 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.72 Total: 4.85 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.49 Total: -1.63 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.15 Total: -44.16 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.18 -8.09 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329509043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.910 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds