Wall clock time and date at job start Tue Mar 31 2020 07:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46708 * 2 1 4 4 C 1.50697 * 109.46865 * 240.00045 * 2 1 3 5 5 O 1.21287 * 120.00142 * 334.53596 * 4 2 1 6 6 N 1.34777 * 119.99980 * 154.53241 * 4 2 1 7 7 C 1.46925 * 120.62863 * 5.25317 * 6 4 2 8 8 C 1.53620 * 108.54210 * 126.36807 * 7 6 4 9 9 C 1.53046 * 109.24298 * 54.85152 * 8 7 6 10 10 C 1.53040 * 109.54069 * 298.51204 * 9 8 7 11 11 H 1.08995 * 109.52292 * 301.39892 * 10 9 8 12 12 C 1.50702 * 109.49642 * 181.31502 * 10 9 8 13 13 H 1.07999 * 119.99769 * 240.15957 * 12 10 9 14 14 C 1.37874 * 120.00237 * 60.16272 * 12 10 9 15 15 N 1.31524 * 119.99797 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00212 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47092 * 89.99959 * 16 14 12 18 18 H 1.48497 * 109.47193 * 210.00124 * 16 14 12 19 19 H 1.48493 * 109.46908 * 330.00195 * 16 14 12 20 20 C 1.46930 * 120.62705 * 185.53053 * 6 4 2 21 21 C 1.52998 * 109.47229 * 120.00162 * 2 1 3 22 22 H 1.08996 * 110.21510 * 180.47243 * 21 2 1 23 23 C 1.54481 * 110.24587 * 302.49409 * 21 2 1 24 24 C 1.54630 * 101.76334 * 144.41640 * 23 21 2 25 25 C 1.51277 * 104.19884 * 335.20356 * 24 23 21 26 26 O 1.21278 * 124.94387 * 196.23648 * 25 24 23 27 27 N 1.34421 * 110.11570 * 16.24995 * 25 24 23 28 28 H 1.08997 * 109.47143 * 176.35209 * 1 2 3 29 29 H 1.09004 * 109.46465 * 296.34674 * 1 2 3 30 30 H 1.08992 * 109.47300 * 56.34719 * 1 2 3 31 31 H 1.09000 * 109.58212 * 246.20019 * 7 6 4 32 32 H 1.08997 * 109.58666 * 6.62171 * 7 6 4 33 33 H 1.09000 * 109.63484 * 294.86626 * 8 7 6 34 34 H 1.08998 * 109.43562 * 174.72367 * 8 7 6 35 35 H 1.08997 * 109.45923 * 178.48791 * 9 8 7 36 36 H 1.09006 * 109.44483 * 58.52880 * 9 8 7 37 37 H 0.96995 * 119.99685 * 179.97438 * 15 14 12 38 38 H 1.08992 * 109.58685 * 353.37457 * 20 6 4 39 39 H 1.09005 * 109.58166 * 113.65911 * 20 6 4 40 40 H 1.08996 * 110.97165 * 262.53973 * 23 21 2 41 41 H 1.09007 * 110.96940 * 26.30045 * 23 21 2 42 42 H 1.09000 * 110.48484 * 216.52320 * 24 23 21 43 43 H 1.08998 * 110.59498 * 93.93982 * 24 23 21 44 44 H 0.96995 * 124.35396 * 180.42562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3403 -1.5454 -1.7736 6 7 3.2504 -0.4178 -1.7275 7 6 4.1463 0.5056 -1.0179 8 6 5.4983 -0.1922 -0.8053 9 6 6.0345 -0.6750 -2.1550 10 6 5.0600 -1.6880 -2.7603 11 1 4.9351 -2.5271 -2.0759 12 6 5.6045 -2.1869 -4.0739 13 1 5.0418 -2.0372 -4.9835 14 6 6.8210 -2.8345 -4.1145 15 7 7.5065 -3.0165 -3.0069 16 14 7.4957 -3.4536 -5.7427 17 1 8.3206 -2.3915 -6.3726 18 1 8.3339 -4.6563 -5.5060 19 1 6.3690 -3.8050 -6.6438 20 6 3.7052 -1.0115 -2.9922 21 6 2.0401 -0.7213 1.2492 22 1 3.1299 -0.7210 1.2657 23 6 1.4842 -0.0444 2.5217 24 6 1.2711 -1.2575 3.4566 25 6 1.0987 -2.4273 2.5131 26 8 0.6370 -3.5058 2.8208 27 7 1.5319 -2.0977 1.2840 28 1 -0.3633 -1.0256 -0.0654 29 1 -0.3632 0.4561 0.9210 30 1 -0.3633 0.5694 -0.8554 31 1 4.2872 1.4077 -1.6133 32 1 3.7123 0.7664 -0.0527 33 1 5.3695 -1.0451 -0.1390 34 1 6.2042 0.5114 -0.3641 35 1 7.0065 -1.1470 -2.0118 36 1 6.1396 0.1753 -2.8290 37 1 8.3621 -3.4724 -3.0354 38 1 2.9801 -1.7519 -3.3299 39 1 3.8085 -0.2309 -3.7459 40 1 2.2108 0.6501 2.9433 41 1 0.5399 0.4593 2.3148 42 1 0.3749 -1.1200 4.0616 43 1 2.1419 -1.4073 4.0949 44 1 1.5111 -2.6929 0.5184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329509043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:59 Heat of formation + Delta-G solvation = -107.156296 kcal Electronic energy + Delta-G solvation = -25041.401113 eV Core-core repulsion = 21570.861117 eV Total energy + Delta-G solvation = -3470.539996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95494 -40.68099 -38.54828 -37.75213 -35.39919 -33.89060 -32.91984 -32.16205 -31.83490 -27.99069 -27.24880 -26.54896 -24.64351 -23.32323 -22.17365 -21.59174 -21.08819 -19.57845 -18.62884 -18.20345 -17.89222 -17.61902 -16.75779 -16.54297 -16.16493 -15.63228 -15.18162 -15.09441 -14.99041 -14.66171 -14.45027 -14.38937 -14.19508 -13.71849 -13.57882 -13.43794 -13.00481 -12.88338 -12.81887 -12.75663 -12.59484 -12.46482 -12.16329 -11.87886 -11.82052 -11.64000 -11.57998 -11.25218 -10.93430 -10.86240 -10.58793 -10.42650 -10.13461 -9.46403 -8.13135 -6.28220 1.37904 1.39857 1.49278 1.54563 1.66495 2.11254 2.39232 2.42094 3.13625 3.29694 3.49511 3.63793 3.86856 4.00254 4.07707 4.23159 4.28455 4.31685 4.39021 4.40549 4.56126 4.62247 4.71415 4.80639 4.85776 4.89344 4.90762 4.96162 4.99928 5.13779 5.19232 5.23711 5.29991 5.42399 5.48808 5.58278 5.60123 5.75235 5.93031 6.06420 6.14349 6.33544 6.60272 6.81992 7.17725 7.25330 7.40272 8.90180 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021692 B = 0.004093 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.510945 B = 6838.776080 C = 7025.120908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 H 0.151 0.849 4 C 0.501 3.499 5 O -0.594 6.594 6 N -0.605 5.605 7 C 0.106 3.894 8 C -0.127 4.127 9 C -0.107 4.107 10 C 0.043 3.957 11 H -0.019 1.019 12 C -0.540 4.540 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.952 3.048 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.129 3.871 21 C 0.130 3.870 22 H 0.095 0.905 23 C -0.114 4.114 24 C -0.145 4.145 25 C 0.503 3.497 26 O -0.601 6.601 27 N -0.728 5.728 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 16.228 13.347 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 H 0.168 0.832 4 C 0.290 3.710 5 O -0.475 6.475 6 N -0.336 5.336 7 C -0.016 4.016 8 C -0.165 4.165 9 C -0.145 4.145 10 C 0.024 3.976 11 H 0.000 1.000 12 C -0.578 4.578 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.778 3.222 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.006 3.994 21 C 0.025 3.975 22 H 0.113 0.887 23 C -0.151 4.151 24 C -0.185 4.185 25 C 0.292 3.708 26 O -0.483 6.483 27 N -0.380 5.380 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.807 15.276 13.378 22.134 hybrid contribution 0.727 -1.723 -1.955 2.706 sum -8.080 13.553 11.423 19.479 Atomic orbital electron populations 1.21715 0.91923 1.01871 1.03580 1.21775 0.98861 1.02100 0.90320 0.83190 1.21474 0.80640 0.82439 0.86424 1.90666 1.57963 1.35786 1.63100 1.48415 1.15767 1.45870 1.23582 1.22200 0.89333 0.91591 0.98446 1.21984 0.97122 1.00010 0.97362 1.21421 1.00898 0.97094 0.95076 1.18842 0.91004 0.93047 0.94717 1.00047 1.21466 1.04551 1.37455 0.94340 0.93170 1.25659 0.97142 0.95815 0.99471 1.70007 1.14346 1.42789 1.28025 0.85644 0.78279 0.78038 0.80244 1.19429 1.21045 1.19857 1.21508 0.96344 0.96598 0.84957 1.22026 0.99420 0.80313 0.95764 0.88706 1.22953 1.05085 0.96646 0.90425 1.22408 1.06707 0.91646 0.97697 1.21926 0.74968 0.89366 0.84590 1.90706 1.48412 1.28622 1.80523 1.46717 1.62802 1.16632 1.11871 0.94681 0.87911 0.92400 0.89616 0.85921 0.93889 0.88895 0.92292 0.94329 0.92981 0.93456 0.91984 0.84598 0.87283 0.86374 0.86004 0.76624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.38 71.98 0.60 -1.80 16 2 C -0.11 -1.94 1.81 -11.54 -0.02 -1.96 16 3 H 0.15 1.40 6.74 -2.39 -0.02 1.38 16 4 C 0.50 15.55 6.24 87.66 0.55 16.10 16 5 O -0.59 -24.48 14.97 -3.05 -0.05 -24.53 16 6 N -0.61 -19.52 2.97 -818.07 -2.43 -21.94 16 7 C 0.11 2.40 6.01 86.51 0.52 2.92 16 8 C -0.13 -3.80 6.10 30.82 0.19 -3.61 16 9 C -0.11 -4.58 4.96 30.62 0.15 -4.43 16 10 C 0.04 2.14 2.25 -11.46 -0.03 2.11 16 11 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 12 C -0.54 -29.88 8.56 25.60 0.22 -29.66 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 14 C 0.02 1.01 5.30 84.65 0.45 1.46 16 15 N -0.91 -52.21 11.32 21.45 0.24 -51.97 16 16 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 20 C 0.13 5.47 5.66 86.36 0.49 5.96 16 21 C 0.13 2.11 3.00 45.44 0.14 2.25 16 22 H 0.10 1.49 7.17 -2.39 -0.02 1.48 16 23 C -0.11 -0.79 6.51 31.65 0.21 -0.59 16 24 C -0.14 -1.86 6.86 30.59 0.21 -1.65 16 25 C 0.50 13.38 8.43 87.90 0.74 14.13 16 26 O -0.60 -22.58 18.03 -3.02 -0.05 -22.64 16 27 N -0.73 -19.00 5.03 -439.44 -2.21 -21.21 16 28 H 0.03 0.89 7.31 -2.39 -0.02 0.87 16 29 H 0.10 1.05 5.85 -2.39 -0.01 1.04 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.12 1.57 4.82 -2.39 -0.01 1.56 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 2.97 6.05 -2.39 -0.01 2.96 16 36 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.05 2.27 7.00 -2.39 -0.02 2.25 16 39 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.11 0.45 5.61 -2.38 -0.01 0.44 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.40 13.22 8.06 -92.71 -0.75 12.48 16 Total: -1.00 -80.35 339.34 2.21 -78.14 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.27 Total: 17.12 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.41 Total: 1.23 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -4.40 Total: -95.12 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.10 Total: -47.16 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -80.35 2.21 -78.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329509043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.014 kcal (2) G-P(sol) polarization free energy of solvation -80.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds