Wall clock time and date at job start Tue Mar 31 2020 07:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47171 * 2 1 4 4 C 1.50699 * 109.47233 * 239.99587 * 2 1 3 5 5 O 1.21286 * 119.99852 * 338.65516 * 4 2 1 6 6 N 1.34770 * 120.00192 * 158.66021 * 4 2 1 7 7 C 1.46934 * 120.62922 * 355.22565 * 6 4 2 8 8 C 1.53187 * 108.77835 * 233.58860 * 7 6 4 9 9 C 1.53043 * 109.31513 * 305.36878 * 8 7 6 10 10 C 1.53044 * 109.53934 * 61.36243 * 9 8 7 11 11 H 1.08990 * 109.49904 * 58.58733 * 10 9 8 12 12 C 1.50697 * 109.52178 * 178.67116 * 10 9 8 13 13 H 1.08002 * 119.99969 * 119.92067 * 12 10 9 14 14 C 1.37870 * 119.99950 * 299.91483 * 12 10 9 15 15 N 1.31509 * 120.00258 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99884 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46968 * 60.00425 * 16 14 12 18 18 H 1.48501 * 109.47023 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47277 * 300.00174 * 16 14 12 20 20 C 1.46930 * 120.63491 * 175.20761 * 6 4 2 21 21 C 1.53005 * 109.46783 * 119.99851 * 2 1 3 22 22 H 1.08995 * 110.21426 * 180.48176 * 21 2 1 23 23 C 1.54480 * 110.24362 * 302.49607 * 21 2 1 24 24 C 1.54625 * 101.76546 * 144.42021 * 23 21 2 25 25 C 1.51284 * 104.19560 * 335.20059 * 24 23 21 26 26 O 1.21278 * 124.94587 * 196.23426 * 25 24 23 27 27 N 1.34424 * 110.11191 * 16.25309 * 25 24 23 28 28 H 1.09006 * 109.46736 * 66.91321 * 1 2 3 29 29 H 1.08999 * 109.47275 * 186.91261 * 1 2 3 30 30 H 1.08994 * 109.47112 * 306.91315 * 1 2 3 31 31 H 1.09003 * 109.58486 * 353.38363 * 7 6 4 32 32 H 1.09004 * 109.58243 * 113.80197 * 7 6 4 33 33 H 1.09005 * 109.49681 * 65.31687 * 8 7 6 34 34 H 1.08999 * 109.49890 * 185.37925 * 8 7 6 35 35 H 1.09008 * 109.45623 * 301.34360 * 9 8 7 36 36 H 1.08999 * 109.46251 * 181.38672 * 9 8 7 37 37 H 0.97002 * 120.00045 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.58592 * 6.62539 * 20 6 4 39 39 H 1.08994 * 109.58761 * 246.19899 * 20 6 4 40 40 H 1.08997 * 110.97189 * 262.53949 * 23 21 2 41 41 H 1.09001 * 110.97314 * 26.29824 * 23 21 2 42 42 H 1.09002 * 110.48664 * 216.52830 * 24 23 21 43 43 H 1.08998 * 110.60203 * 93.93567 * 24 23 21 44 44 H 0.97006 * 124.34746 * 180.38384 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3122 -1.4905 -1.8167 6 7 3.2820 -0.4792 -1.6792 7 6 4.1295 0.5386 -1.0429 8 6 4.6339 1.5039 -2.1201 9 6 5.3302 0.7085 -3.2267 10 6 4.3306 -0.2548 -3.8711 11 1 3.4905 0.3095 -4.2757 12 6 5.0081 -1.0145 -4.9824 13 1 5.0699 -2.0919 -4.9404 14 6 5.5490 -0.3340 -6.0526 15 7 5.4741 0.9779 -6.1035 16 14 6.3881 -1.2758 -7.4304 17 1 5.4174 -2.2111 -8.0535 18 1 6.8821 -0.3199 -8.4540 19 1 7.5324 -2.0449 -6.8790 20 6 3.8229 -1.2402 -2.8137 21 6 2.0400 -0.7213 1.2493 22 1 3.1298 -0.7209 1.2659 23 6 1.4840 -0.0443 2.5217 24 6 1.2709 -1.2572 3.4567 25 6 1.0985 -2.4272 2.5132 26 8 0.6368 -3.5056 2.8210 27 7 1.5319 -2.0976 1.2842 28 1 -0.3633 0.4030 -0.9454 29 1 -0.3634 -1.0202 0.1237 30 1 -0.3633 0.6172 0.8216 31 1 3.5475 1.0882 -0.3030 32 1 4.9783 0.0562 -0.5581 33 1 3.7908 2.0518 -2.5412 34 1 5.3397 2.2066 -1.6772 35 1 6.1579 0.1415 -2.8005 36 1 5.7117 1.3951 -3.9824 37 1 5.8549 1.4566 -6.8563 38 1 3.0386 -1.8641 -3.2423 39 1 4.6466 -1.8675 -2.4733 40 1 2.2105 0.6503 2.9433 41 1 0.5398 0.4594 2.3148 42 1 0.3746 -1.1198 4.0616 43 1 2.1416 -1.4071 4.0951 44 1 1.5116 -2.6931 0.5187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329509044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:02 Heat of formation + Delta-G solvation = -83.986868 kcal Electronic energy + Delta-G solvation = -24821.075092 eV Core-core repulsion = 21351.539798 eV Total energy + Delta-G solvation = -3469.535294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98818 -39.51171 -37.22609 -36.58570 -33.66573 -32.77197 -31.50719 -31.39152 -30.21140 -27.18372 -25.63731 -25.07385 -23.53052 -21.78989 -21.35008 -20.74283 -19.58934 -18.29112 -17.42998 -16.93308 -16.85188 -16.26450 -15.35633 -15.14720 -14.76773 -14.53530 -13.97613 -13.91719 -13.79530 -13.54980 -13.23820 -12.98517 -12.83910 -12.80353 -12.29230 -12.19057 -12.05841 -12.01456 -11.62161 -11.35855 -11.07609 -10.99274 -10.88641 -10.78604 -10.36364 -10.01633 -9.98803 -9.87707 -9.54708 -9.31546 -9.24634 -8.88964 -8.43809 -7.99725 -6.06744 -4.14089 2.47640 2.85539 3.22026 3.28408 3.32932 3.34112 3.40742 4.07068 4.15908 4.38384 4.39055 4.64676 4.76654 4.85278 4.95018 4.99880 5.23145 5.29195 5.35422 5.40710 5.46515 5.52332 5.62911 5.67639 5.76406 5.87639 6.02313 6.19285 6.24438 6.30843 6.39479 6.57524 6.65694 6.72293 6.87497 6.93589 7.08436 7.25744 7.63321 7.83488 7.91844 8.01461 8.13619 8.31340 8.51839 8.89208 9.51217 10.98736 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.003670 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.185500 B = 7627.344768 C = 7972.658477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 H 0.108 0.892 4 C 0.508 3.492 5 O -0.545 6.545 6 N -0.600 5.600 7 C 0.106 3.894 8 C -0.135 4.135 9 C -0.113 4.113 10 C 0.041 3.959 11 H 0.029 0.971 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.116 3.884 21 C 0.141 3.859 22 H 0.088 0.912 23 C -0.132 4.132 24 C -0.155 4.155 25 C 0.518 3.482 26 O -0.540 6.540 27 N -0.719 5.719 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 4.415 17.624 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 H 0.126 0.874 4 C 0.295 3.705 5 O -0.423 6.423 6 N -0.332 5.332 7 C -0.017 4.017 8 C -0.174 4.174 9 C -0.151 4.151 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.005 4.005 21 C 0.035 3.965 22 H 0.106 0.894 23 C -0.169 4.169 24 C -0.196 4.196 25 C 0.304 3.696 26 O -0.417 6.417 27 N -0.376 5.376 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.904 3.652 17.440 18.481 hybrid contribution 0.724 -0.482 -1.277 1.545 sum -4.180 3.170 16.163 16.993 Atomic orbital electron populations 1.21659 0.92183 1.03126 1.02131 1.21718 0.98843 1.00971 0.93091 0.87398 1.20385 0.81645 0.82903 0.85544 1.90688 1.55377 1.37458 1.58798 1.48350 1.13459 1.37879 1.33506 1.21839 0.94196 0.90024 0.95671 1.22007 1.00455 0.97571 0.97326 1.21634 0.97991 0.99428 0.96013 1.18953 0.94873 0.92650 0.91328 0.95283 1.21033 1.36830 0.93195 1.04417 0.92558 1.24923 0.95956 0.94871 0.97962 1.69853 1.45611 1.06308 1.30992 0.86640 0.79878 0.79663 0.81732 1.20202 1.21282 1.20244 1.22023 0.97640 0.95023 0.85839 1.21614 0.98747 0.81689 0.94441 0.89426 1.22817 1.03376 0.97288 0.93457 1.22347 1.05155 0.93704 0.98359 1.20866 0.76248 0.88689 0.83754 1.90755 1.45645 1.25800 1.79511 1.46395 1.63400 1.15357 1.12404 0.91783 0.91513 0.91930 0.90978 0.91834 0.92340 0.92364 0.94579 0.88609 0.92886 0.90282 0.92667 0.88774 0.88964 0.88018 0.87781 0.74422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.06 37.16 0.30 -1.13 16 2 C -0.12 -1.33 1.84 -91.77 -0.17 -1.50 16 3 H 0.11 0.93 6.25 -51.93 -0.32 0.61 16 4 C 0.51 8.08 6.21 -10.99 -0.07 8.02 16 5 O -0.55 -10.78 15.35 5.55 0.09 -10.70 16 6 N -0.60 -9.97 2.97 -172.76 -0.51 -10.49 16 7 C 0.11 1.41 5.92 -3.71 -0.02 1.39 16 8 C -0.14 -2.19 6.08 -26.61 -0.16 -2.35 16 9 C -0.11 -2.40 4.96 -26.69 -0.13 -2.53 16 10 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -24.46 11.32 55.43 0.63 -23.83 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 C 0.12 2.37 5.66 -3.71 -0.02 2.35 16 21 C 0.14 1.26 3.20 -67.01 -0.21 1.05 16 22 H 0.09 0.73 7.77 -51.93 -0.40 0.33 16 23 C -0.13 -0.77 6.51 -25.10 -0.16 -0.94 16 24 C -0.16 -1.15 6.86 -26.74 -0.18 -1.33 16 25 C 0.52 6.37 8.43 -10.86 -0.09 6.28 16 26 O -0.54 -9.06 18.03 5.56 0.10 -8.96 16 27 N -0.72 -8.44 4.84 -52.77 -0.26 -8.70 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.84 7.35 -51.93 -0.38 0.45 16 30 H 0.06 0.48 6.30 -51.93 -0.33 0.16 16 31 H 0.07 0.70 5.42 -51.93 -0.28 0.42 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.10 2.35 6.05 -51.93 -0.31 2.03 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.08 1.77 7.00 -51.93 -0.36 1.41 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.49 5.77 -51.93 -0.30 0.19 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.42 5.73 8.24 -40.82 -0.34 5.39 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -32.11 340.82 -8.16 -40.27 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.80 Total: 3.74 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.52 Total: -2.28 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.14 Total: -43.02 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.19 Total: -19.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.11 -8.16 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329509044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.715 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds