Wall clock time and date at job start Tue Mar 31 2020 07:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47261 * 2 1 4 4 C 1.50695 * 109.47163 * 239.99513 * 2 1 3 5 5 O 1.21284 * 120.00003 * 263.52100 * 4 2 1 6 6 N 1.34767 * 119.99969 * 83.52165 * 4 2 1 7 7 C 1.46921 * 120.63363 * 4.62626 * 6 4 2 8 8 C 1.52757 * 109.01197 * 233.58309 * 7 6 4 9 9 C 1.53040 * 109.38418 * 305.58687 * 8 7 6 10 10 C 1.53043 * 109.53962 * 61.23606 * 9 8 7 11 11 H 1.09003 * 109.49799 * 58.58452 * 10 9 8 12 12 C 1.50695 * 109.52562 * 178.67207 * 10 9 8 13 13 H 1.07999 * 120.00243 * 119.85828 * 12 10 9 14 14 C 1.37877 * 119.99949 * 299.85385 * 12 10 9 15 15 N 1.31516 * 119.99744 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00092 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47272 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47453 * 119.99814 * 16 14 12 19 19 H 1.48504 * 109.46845 * 240.00002 * 16 14 12 20 20 C 1.46929 * 120.63263 * 184.89974 * 6 4 2 21 21 C 1.53007 * 109.46664 * 119.99437 * 2 1 3 22 22 H 1.09003 * 110.21552 * 60.70179 * 21 2 1 23 23 C 1.54475 * 110.24763 * 298.77421 * 21 2 1 24 24 C 1.54866 * 101.66001 * 266.38944 * 23 21 2 25 25 C 1.51281 * 104.20741 * 335.19509 * 24 23 21 26 26 O 1.21283 * 124.94458 * 196.24289 * 25 24 23 27 27 N 1.34421 * 110.11563 * 16.26182 * 25 24 23 28 28 H 1.09010 * 109.47250 * 66.26815 * 1 2 3 29 29 H 1.09000 * 109.47726 * 306.27178 * 1 2 3 30 30 H 1.08993 * 109.47648 * 186.27020 * 1 2 3 31 31 H 1.08997 * 109.58715 * 353.41672 * 7 6 4 32 32 H 1.08999 * 109.59126 * 113.84442 * 7 6 4 33 33 H 1.09001 * 109.57237 * 185.55095 * 8 7 6 34 34 H 1.09000 * 109.36298 * 65.49193 * 8 7 6 35 35 H 1.09003 * 109.46212 * 301.21819 * 9 8 7 36 36 H 1.08996 * 109.45549 * 181.25014 * 9 8 7 37 37 H 0.97001 * 119.99883 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.59064 * 246.15954 * 20 6 4 39 39 H 1.09000 * 109.58452 * 6.44441 * 20 6 4 40 40 H 1.08998 * 110.97273 * 24.52820 * 23 21 2 41 41 H 1.08993 * 110.97226 * 148.29957 * 23 21 2 42 42 H 1.08999 * 110.46763 * 216.51524 * 24 23 21 43 43 H 1.08999 * 110.48798 * 93.88053 * 24 23 21 44 44 H 0.97008 * 124.35029 * 180.43508 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.3462 -1.8804 -1.1694 6 7 2.1328 -0.0459 -2.3984 7 6 1.8533 1.3949 -2.4664 8 6 0.8123 1.6491 -3.5551 9 6 1.2961 1.0395 -4.8728 10 6 1.4641 -0.4725 -4.7062 11 1 0.5133 -0.9134 -4.4065 12 6 1.9092 -1.0769 -6.0129 13 1 2.8490 -1.6058 -6.0710 14 6 1.1165 -0.9547 -7.1344 15 7 -0.0283 -0.3112 -7.0635 16 14 1.6678 -1.7045 -8.7540 17 1 2.9823 -2.3703 -8.5693 18 1 0.6654 -2.7034 -9.2039 19 1 1.7945 -0.6352 -9.7767 20 6 2.5180 -0.7495 -3.6294 21 6 2.0399 -0.7212 1.2494 22 1 1.6935 -1.7547 1.2555 23 6 1.5603 0.0108 2.5224 24 6 2.7589 0.9466 2.8157 25 6 3.9373 0.2551 2.1662 26 8 5.1019 0.5054 2.3946 27 7 3.5060 -0.6766 1.2986 28 1 -0.3634 0.4136 -0.9408 29 1 -0.3634 0.6080 0.8285 30 1 -0.3634 -1.0214 0.1122 31 1 1.4673 1.7380 -1.5065 32 1 2.7694 1.9339 -2.7080 33 1 0.6704 2.7224 -3.6812 34 1 -0.1324 1.1882 -3.2664 35 1 2.2530 1.4829 -5.1484 36 1 0.5644 1.2394 -5.6556 37 1 -0.5861 -0.2256 -7.8524 38 1 3.4894 -0.3890 -3.9676 39 1 2.5729 -1.8208 -3.4360 40 1 0.6550 0.5849 2.3246 41 1 1.4039 -0.6917 3.3408 42 1 2.9159 1.0394 3.8903 43 1 2.5967 1.9265 2.3668 44 1 4.0888 -1.2467 0.7730 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329509045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:05 Heat of formation + Delta-G solvation = -86.814062 kcal Electronic energy + Delta-G solvation = -24852.487624 eV Core-core repulsion = 21382.829733 eV Total energy + Delta-G solvation = -3469.657890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92160 -39.49477 -37.23542 -36.45320 -33.79851 -32.87473 -31.41868 -31.35093 -30.16144 -26.95854 -25.56515 -25.07458 -23.75430 -21.80941 -21.20898 -20.59995 -19.67927 -18.25375 -17.75109 -16.97286 -16.38666 -16.19451 -15.41424 -15.07862 -14.72700 -14.53189 -13.99202 -13.84569 -13.68899 -13.38494 -13.33510 -13.08401 -12.84695 -12.73069 -12.46599 -12.07923 -11.97230 -11.92883 -11.72763 -11.39292 -11.10101 -11.02805 -10.85532 -10.73649 -10.35076 -10.01006 -9.96641 -9.87446 -9.54596 -9.33250 -9.17044 -8.87133 -8.44084 -7.97936 -6.07246 -4.14200 2.49560 2.92085 3.25585 3.28968 3.33671 3.36416 3.42069 4.13770 4.23704 4.38481 4.41049 4.67666 4.77863 4.96232 5.04682 5.09457 5.22831 5.33329 5.36219 5.40647 5.51336 5.55881 5.64101 5.68822 5.72317 5.83203 6.01469 6.09122 6.26302 6.32649 6.41223 6.59962 6.71227 6.73955 6.88824 6.99261 7.09582 7.26603 7.63729 7.84426 7.93548 8.01486 8.16989 8.31493 8.53750 8.89578 9.51173 10.98362 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003699 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.803395 B = 7568.297878 C = 7825.532633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.094 0.906 4 C 0.516 3.484 5 O -0.554 6.554 6 N -0.599 5.599 7 C 0.106 3.894 8 C -0.134 4.134 9 C -0.113 4.113 10 C 0.041 3.959 11 H 0.029 0.971 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.117 3.883 21 C 0.148 3.852 22 H 0.101 0.899 23 C -0.131 4.131 24 C -0.157 4.157 25 C 0.516 3.484 26 O -0.542 6.542 27 N -0.719 5.719 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.260 0.740 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 5.202 17.024 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 H 0.112 0.888 4 C 0.303 3.697 5 O -0.433 6.433 6 N -0.330 5.330 7 C -0.017 4.017 8 C -0.173 4.173 9 C -0.151 4.151 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.004 4.004 21 C 0.041 3.959 22 H 0.119 0.881 23 C -0.168 4.168 24 C -0.198 4.198 25 C 0.302 3.698 26 O -0.419 6.419 27 N -0.374 5.374 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.270 4.837 17.112 17.828 hybrid contribution 0.383 -0.470 -1.407 1.532 sum -0.886 4.367 15.705 16.325 Atomic orbital electron populations 1.21782 0.91650 1.03382 1.03234 1.21802 0.98403 1.01027 0.93628 0.88753 1.20310 0.78000 0.87022 0.84343 1.90652 1.50863 1.16594 1.85183 1.48289 1.66456 1.09386 1.08870 1.21724 0.99346 0.80949 0.99663 1.21931 0.97920 1.00006 0.97409 1.21635 1.00833 0.97496 0.95131 1.18968 0.93880 0.92818 0.92144 0.95292 1.21112 1.05742 1.34687 0.93750 0.92438 1.24930 0.94797 0.95099 0.98942 1.69878 1.11573 1.41884 1.29426 0.86524 0.78812 0.79019 0.83598 1.19719 1.20992 1.21015 1.22018 0.98888 0.96885 0.82636 1.21508 0.79895 1.01191 0.93266 0.88134 1.22801 0.98421 0.98737 0.96883 1.22395 0.93957 1.00322 1.03091 1.20948 0.89818 0.79703 0.79343 1.90751 1.19760 1.66423 1.64985 1.46358 1.08211 1.39058 1.43729 0.91138 0.91131 0.91434 0.90994 0.91982 0.92393 0.92351 0.94580 0.88600 0.93012 0.92766 0.90338 0.88470 0.89532 0.88070 0.87812 0.74573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.65 37.16 0.32 -0.99 16 2 C -0.13 -1.39 1.65 -91.77 -0.15 -1.54 16 3 H 0.09 0.94 6.36 -51.93 -0.33 0.61 16 4 C 0.52 8.36 6.53 -10.99 -0.07 8.29 16 5 O -0.55 -10.70 15.30 5.55 0.08 -10.61 16 6 N -0.60 -10.41 2.98 -173.04 -0.52 -10.92 16 7 C 0.11 1.55 6.09 -3.94 -0.02 1.52 16 8 C -0.13 -2.23 6.06 -26.84 -0.16 -2.40 16 9 C -0.11 -2.44 4.97 -26.69 -0.13 -2.57 16 10 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.51 -13.68 8.56 -34.44 -0.29 -13.98 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.41 11.32 55.43 0.63 -23.79 16 16 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.12 2.45 5.65 -3.71 -0.02 2.43 16 21 C 0.15 1.46 2.58 -67.01 -0.17 1.29 16 22 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 23 C -0.13 -0.84 6.54 -24.97 -0.16 -1.00 16 24 C -0.16 -1.23 6.86 -26.61 -0.18 -1.42 16 25 C 0.52 6.48 8.43 -10.86 -0.09 6.39 16 26 O -0.54 -9.16 18.03 5.55 0.10 -9.06 16 27 N -0.72 -8.65 5.48 -52.76 -0.29 -8.94 16 28 H 0.07 0.75 7.82 -51.92 -0.41 0.34 16 29 H 0.07 0.43 6.40 -51.93 -0.33 0.09 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.81 5.21 -51.93 -0.27 0.54 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.77 7.03 -51.93 -0.37 1.41 16 40 H 0.10 0.44 5.98 -51.93 -0.31 0.13 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.41 5.56 8.83 -40.82 -0.36 5.20 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -31.82 343.13 -8.16 -39.98 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.87 Total: 3.95 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.45 Total: -1.60 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.18 Total: -43.65 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.19 Total: -19.67 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.82 -8.16 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329509045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.833 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds