Wall clock time and date at job start Tue Mar 31 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47506 * 2 1 4 4 C 1.50704 * 109.47344 * 239.99498 * 2 1 3 5 5 O 1.21280 * 119.99636 * 247.63938 * 4 2 1 6 6 N 1.34772 * 120.00077 * 67.63533 * 4 2 1 7 7 C 1.46928 * 120.62783 * 3.30232 * 6 4 2 8 8 C 1.53186 * 108.77531 * 126.37042 * 7 6 4 9 9 C 1.53043 * 109.31673 * 54.63152 * 8 7 6 10 10 C 1.53041 * 109.53558 * 298.63818 * 9 8 7 11 11 H 1.08992 * 109.49482 * 301.37874 * 10 9 8 12 12 C 1.50697 * 109.49226 * 181.31337 * 10 9 8 13 13 H 1.08002 * 119.99871 * 239.99507 * 12 10 9 14 14 C 1.37879 * 120.00381 * 60.00359 * 12 10 9 15 15 N 1.31512 * 119.99752 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00131 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47295 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47078 * 119.99628 * 16 14 12 19 19 H 1.48493 * 109.47077 * 239.99695 * 16 14 12 20 20 C 1.46923 * 120.63148 * 183.02265 * 6 4 2 21 21 C 1.53001 * 109.47000 * 119.99377 * 2 1 3 22 22 H 1.09008 * 110.28492 * 61.97592 * 21 2 1 23 23 C 1.54476 * 110.24884 * 300.00168 * 21 2 1 24 24 C 1.54633 * 101.76429 * 266.41506 * 23 21 2 25 25 C 1.51290 * 104.19138 * 335.19974 * 24 23 21 26 26 O 1.21283 * 124.93934 * 196.21684 * 25 24 23 27 27 N 1.34412 * 110.11871 * 16.25705 * 25 24 23 28 28 H 1.09006 * 109.47127 * 306.99943 * 1 2 3 29 29 H 1.09006 * 109.47413 * 66.99628 * 1 2 3 30 30 H 1.08999 * 109.47772 * 187.00180 * 1 2 3 31 31 H 1.09002 * 109.58931 * 246.15222 * 7 6 4 32 32 H 1.08995 * 109.59141 * 6.58043 * 7 6 4 33 33 H 1.09005 * 109.50373 * 174.58741 * 8 7 6 34 34 H 1.09002 * 109.49586 * 294.68217 * 8 7 6 35 35 H 1.09005 * 109.45382 * 58.65855 * 9 8 7 36 36 H 1.08997 * 109.46095 * 178.61704 * 9 8 7 37 37 H 0.96994 * 119.99829 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.58884 * 353.42146 * 20 6 4 39 39 H 1.08999 * 109.58454 * 113.84861 * 20 6 4 40 40 H 1.09000 * 110.96840 * 24.53139 * 23 21 2 41 41 H 1.08995 * 110.96993 * 148.29880 * 23 21 2 42 42 H 1.08998 * 110.48793 * 93.87709 * 24 23 21 43 43 H 1.08999 * 110.48945 * 216.52569 * 24 23 21 44 44 H 0.97000 * 124.35212 * 180.43323 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6112 -1.7710 -1.1243 6 7 1.8383 -0.1676 -2.4486 7 6 1.2032 1.1500 -2.5883 8 6 2.1143 2.0498 -3.4291 9 6 2.4233 1.3568 -4.7582 10 6 3.1575 0.0410 -4.4907 11 1 4.0771 0.2427 -3.9415 12 6 3.4899 -0.6248 -5.8011 13 1 3.1017 -1.6084 -6.0208 14 6 4.2896 0.0216 -6.7196 15 7 4.7620 1.2195 -6.4523 16 14 4.7021 -0.8040 -8.3437 17 1 4.0517 -2.1378 -8.4001 18 1 4.2079 0.0349 -9.4650 19 1 6.1739 -0.9652 -8.4572 20 6 2.2633 -0.8792 -3.6617 21 6 2.0399 -0.7211 1.2493 22 1 1.7129 -1.7610 1.2454 23 6 1.5348 -0.0068 2.5225 24 6 2.7104 0.9476 2.8359 25 6 3.9087 0.2834 2.1941 26 8 5.0657 0.5538 2.4370 27 7 3.5044 -0.6495 1.3149 28 1 -0.3634 0.6185 0.8208 29 1 -0.3634 0.4016 -0.9460 30 1 -0.3634 -1.0199 0.1253 31 1 0.2391 1.0402 -3.0849 32 1 1.0604 1.5933 -1.6028 33 1 1.6122 2.9981 -3.6213 34 1 3.0435 2.2325 -2.8894 35 1 1.4918 1.1522 -5.2861 36 1 3.0515 2.0056 -5.3685 37 1 5.3243 1.6744 -7.0986 38 1 2.8197 -1.7743 -3.3842 39 1 1.3874 -1.1578 -4.2476 40 1 0.6217 0.5526 2.3197 41 1 1.3827 -0.7180 3.3344 42 1 2.5347 1.9277 2.3927 43 1 2.8542 1.0350 3.9129 44 1 4.1034 -1.2043 0.7913 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329509046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:08 Heat of formation + Delta-G solvation = -85.763742 kcal Electronic energy + Delta-G solvation = -24906.573273 eV Core-core repulsion = 21436.960928 eV Total energy + Delta-G solvation = -3469.612345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89154 -39.47519 -37.19365 -36.41128 -33.92165 -32.83007 -31.34218 -31.31706 -30.13089 -26.93635 -25.54537 -25.10896 -23.72839 -21.78930 -21.19377 -20.49707 -19.60779 -18.46669 -17.66238 -16.76434 -16.38328 -16.20807 -15.46935 -15.05853 -14.77630 -14.37774 -13.89174 -13.80561 -13.69346 -13.38786 -13.28631 -13.11896 -12.91968 -12.75992 -12.32722 -12.16013 -12.04098 -11.84674 -11.72229 -11.40852 -11.05803 -11.00359 -10.86105 -10.73762 -10.35305 -9.99169 -9.87572 -9.84641 -9.52324 -9.33485 -9.09490 -8.85204 -8.42724 -7.97645 -6.05093 -4.12542 2.59318 2.93052 3.26722 3.34439 3.36830 3.39490 3.42190 4.17270 4.27963 4.39090 4.41008 4.68216 4.78691 4.98884 5.03073 5.09641 5.24429 5.32315 5.35305 5.40988 5.48212 5.54706 5.59436 5.67849 5.72582 5.81087 5.96762 6.06317 6.26912 6.33653 6.42477 6.59750 6.74332 6.83066 6.90883 7.10614 7.11694 7.28143 7.65537 7.86065 7.94288 8.03766 8.28076 8.32936 8.53966 8.91374 9.52824 11.00487 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.003980 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.735670 B = 7033.350301 C = 7365.517947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 H 0.097 0.903 4 C 0.516 3.484 5 O -0.553 6.553 6 N -0.599 5.599 7 C 0.107 3.893 8 C -0.137 4.137 9 C -0.112 4.112 10 C 0.039 3.961 11 H 0.028 0.972 12 C -0.515 4.515 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.117 3.883 21 C 0.151 3.849 22 H 0.097 0.903 23 C -0.131 4.131 24 C -0.158 4.158 25 C 0.514 3.486 26 O -0.541 6.541 27 N -0.716 5.716 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.260 0.740 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 1.577 15.484 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 H 0.115 0.885 4 C 0.303 3.697 5 O -0.432 6.432 6 N -0.330 5.330 7 C -0.016 4.016 8 C -0.175 4.175 9 C -0.150 4.150 10 C 0.020 3.980 11 H 0.046 0.954 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.004 4.004 21 C 0.045 3.955 22 H 0.115 0.885 23 C -0.169 4.169 24 C -0.198 4.198 25 C 0.300 3.700 26 O -0.418 6.418 27 N -0.371 5.371 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.698 1.356 15.633 19.572 hybrid contribution 0.467 -0.438 -1.383 1.524 sum -11.232 0.918 14.250 18.167 Atomic orbital electron populations 1.21902 0.92086 1.03204 1.03297 1.21791 0.98021 1.01338 0.93736 0.88456 1.20320 0.79410 0.85586 0.84389 1.90638 1.42966 1.23353 1.86283 1.48274 1.58819 1.19316 1.06606 1.21845 0.96269 0.83382 1.00098 1.22022 0.98769 0.97518 0.99168 1.21630 0.99670 0.99824 0.93900 1.18889 0.93391 0.91433 0.94253 0.95379 1.21099 1.30577 1.02696 1.00947 0.92440 1.24939 0.95525 0.94889 0.98441 1.69877 1.34180 1.13073 1.35562 0.86524 0.78201 0.79627 0.83587 1.19720 1.21021 1.20992 1.21915 0.98659 0.96611 0.83197 1.21426 0.80261 1.00812 0.93051 0.88470 1.22768 0.98528 0.98728 0.96889 1.22359 0.93957 1.00380 1.03088 1.20936 0.89958 0.79626 0.79489 1.90755 1.20676 1.65467 1.64883 1.46353 1.08132 1.39549 1.43048 0.91101 0.91090 0.91628 0.91810 0.90937 0.92398 0.92430 0.94568 0.88612 0.92989 0.90291 0.92683 0.88589 0.89599 0.87858 0.88126 0.74172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.40 37.15 0.31 -0.83 16 2 C -0.13 -1.37 1.66 -91.77 -0.15 -1.52 16 3 H 0.10 1.03 7.13 -51.93 -0.37 0.66 16 4 C 0.52 8.31 6.81 -10.99 -0.07 8.24 16 5 O -0.55 -10.66 14.49 5.56 0.08 -10.58 16 6 N -0.60 -10.29 2.98 -173.04 -0.52 -10.80 16 7 C 0.11 1.52 4.93 -3.71 -0.02 1.51 16 8 C -0.14 -2.34 6.08 -26.61 -0.16 -2.51 16 9 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 10 C 0.04 0.95 2.24 -91.87 -0.21 0.75 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.51 -13.81 8.56 -34.44 -0.29 -14.11 16 13 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -24.92 11.31 55.43 0.63 -24.29 16 16 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C 0.12 2.45 5.63 -3.93 -0.02 2.42 16 21 C 0.15 1.53 2.54 -67.01 -0.17 1.36 16 22 H 0.10 1.00 7.98 -51.92 -0.41 0.59 16 23 C -0.13 -0.87 6.52 -25.10 -0.16 -1.03 16 24 C -0.16 -1.34 6.86 -26.74 -0.18 -1.53 16 25 C 0.51 7.06 8.43 -10.86 -0.09 6.97 16 26 O -0.54 -9.91 18.03 5.55 0.10 -9.81 16 27 N -0.72 -9.43 5.44 -52.76 -0.29 -9.71 16 28 H 0.07 0.36 6.38 -51.93 -0.33 0.02 16 29 H 0.07 0.59 6.02 -51.93 -0.31 0.28 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.80 5.03 -51.93 -0.26 0.54 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.08 1.79 7.00 -51.93 -0.36 1.42 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.42 5.92 -51.93 -0.31 0.12 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.42 6.29 8.27 -40.82 -0.34 5.96 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -32.55 339.28 -8.14 -40.69 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.78 Total: 4.63 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.45 Total: -1.25 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.18 Total: -44.81 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.18 Total: -20.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.55 -8.14 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329509046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.074 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds