Wall clock time and date at job start Tue Mar 31 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.00029 * 2 1 4 4 C 1.54336 * 109.99192 * 238.95981 * 2 1 3 5 5 C 1.55156 * 103.02177 * 218.66518 * 4 2 1 6 6 C 1.54905 * 101.58366 * 35.30837 * 5 4 2 7 7 N 1.47030 * 109.88635 * 121.09540 * 2 1 3 8 8 C 1.34775 * 125.64611 * 298.39739 * 7 2 1 9 9 O 1.21352 * 120.00112 * 359.71348 * 8 7 2 10 10 C 1.49451 * 119.99888 * 179.71161 * 8 7 2 11 11 O 1.21342 * 120.00147 * 353.25170 * 10 8 7 12 12 N 1.34776 * 119.99506 * 173.24741 * 10 8 7 13 13 C 1.46917 * 120.63827 * 351.16979 * 12 10 8 14 14 C 1.53188 * 108.77852 * 233.60914 * 13 12 10 15 15 C 1.53034 * 109.31448 * 305.36328 * 14 13 12 16 16 C 1.53041 * 109.53998 * 61.36458 * 15 14 13 17 17 H 1.08994 * 109.49987 * 58.61902 * 16 15 14 18 18 C 1.50702 * 109.50131 * 178.68708 * 16 15 14 19 19 H 1.08001 * 119.99728 * 5.29103 * 18 16 15 20 20 C 1.37869 * 119.99954 * 185.29227 * 18 16 15 21 21 N 1.31515 * 120.00040 * 206.86428 * 20 18 16 22 22 Si 1.86803 * 120.00178 * 26.86242 * 20 18 16 23 23 H 1.48495 * 109.47320 * 179.97438 * 22 20 18 24 24 H 1.48505 * 109.46739 * 59.99845 * 22 20 18 25 25 H 1.48493 * 109.47238 * 300.00093 * 22 20 18 26 26 C 1.46931 * 120.62327 * 171.16892 * 12 10 8 27 27 H 1.09009 * 109.46866 * 300.35656 * 1 2 3 28 28 H 1.08993 * 109.46940 * 60.35704 * 1 2 3 29 29 H 1.09004 * 109.46983 * 180.36307 * 1 2 3 30 30 H 1.09004 * 110.84718 * 100.19785 * 4 2 1 31 31 H 1.08996 * 110.51646 * 336.97894 * 4 2 1 32 32 H 1.08994 * 111.00152 * 277.23035 * 5 4 2 33 33 H 1.09001 * 110.99903 * 153.38282 * 5 4 2 34 34 H 1.08990 * 110.36934 * 204.15160 * 6 5 4 35 35 H 1.08998 * 110.46078 * 81.87061 * 6 5 4 36 36 H 1.09001 * 109.59049 * 113.81872 * 13 12 10 37 37 H 1.09010 * 109.58407 * 353.39607 * 13 12 10 38 38 H 1.08998 * 109.49879 * 185.40749 * 14 13 12 39 39 H 1.09000 * 109.49771 * 65.31729 * 14 13 12 40 40 H 1.09005 * 109.45943 * 301.34164 * 15 14 13 41 41 H 1.08997 * 109.46629 * 181.38721 * 15 14 13 42 42 H 0.96999 * 119.99966 * 354.97380 * 21 20 18 43 43 H 1.08995 * 109.59100 * 6.60363 * 26 12 10 44 44 H 1.08998 * 109.58649 * 246.17488 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2427 5 6 3.2863 -1.5184 -0.6914 6 6 2.8100 -1.8825 0.7369 7 7 2.0301 -0.7141 1.1840 8 6 1.8075 -0.3620 2.4657 9 8 1.1472 0.6243 2.7181 10 6 2.3737 -1.1865 3.5762 11 8 2.9285 -2.2372 3.3298 12 7 2.2683 -0.7629 4.8513 13 6 1.7760 0.5881 5.1531 14 6 2.7962 1.2956 6.0506 15 6 3.0661 0.4344 7.2865 16 6 3.6539 -0.9110 6.8545 17 1 4.5751 -0.7432 6.2966 18 6 3.9494 -1.7457 8.0739 19 1 3.6610 -1.3924 9.0530 20 6 4.5878 -2.9603 7.9397 21 7 4.3950 -3.9067 8.8323 22 14 5.7266 -3.2618 6.4900 23 1 6.2846 -4.6352 6.5761 24 1 6.8357 -2.2747 6.5182 25 1 4.9653 -3.1149 5.2236 26 6 2.6434 -1.6435 5.9660 27 1 -0.3633 0.5194 0.8869 28 1 -0.3633 0.5082 -0.8931 29 1 -0.3633 -1.0277 0.0065 30 1 2.3597 -0.0450 -2.0192 31 1 1.3053 -1.4406 -1.6196 32 1 4.1669 -0.8769 -0.6580 33 1 3.4806 -2.4156 -1.2791 34 1 3.6655 -2.0412 1.3932 35 1 2.1806 -2.7722 0.7134 36 1 0.8188 0.5213 5.6702 37 1 1.6545 1.1483 4.2259 38 1 2.3995 2.2624 6.3604 39 1 3.7251 1.4427 5.4997 40 1 2.1324 0.2671 7.8236 41 1 3.7731 0.9468 7.9389 42 1 3.8624 -3.7266 9.6228 43 1 3.0942 -2.5557 5.5754 44 1 1.7570 -1.8923 6.5494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329662181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:22 Heat of formation + Delta-G solvation = -59.212225 kcal Electronic energy + Delta-G solvation = -25117.135275 eV Core-core repulsion = 21648.674290 eV Total energy + Delta-G solvation = -3468.460985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86303 -39.10422 -37.58368 -36.95312 -33.39164 -32.09960 -31.77495 -31.49524 -30.31052 -26.33302 -25.86334 -24.84472 -23.68740 -21.97154 -21.76394 -20.71826 -19.29597 -18.64238 -17.57074 -17.19161 -16.70199 -16.34958 -15.45388 -15.25834 -14.28566 -14.07097 -13.86838 -13.79241 -13.74326 -13.61030 -13.30940 -13.19975 -12.86756 -12.81400 -12.46708 -12.30466 -11.95527 -11.78130 -11.61789 -11.37372 -11.08035 -11.00252 -10.88603 -10.79296 -10.36353 -10.29961 -10.05727 -9.73181 -9.59996 -9.15285 -8.90548 -8.70952 -8.11034 -8.03584 -6.51927 -4.08946 1.66179 2.43758 3.43707 3.47690 3.53506 3.64122 3.68220 4.23873 4.33959 4.51042 4.56266 4.62047 5.00377 5.06016 5.15738 5.18548 5.30801 5.45903 5.46939 5.51405 5.53036 5.65993 5.71452 5.79872 5.83144 5.93744 5.99559 6.06076 6.15076 6.18688 6.25314 6.32630 6.50621 6.61595 6.68290 6.80817 6.87019 7.19601 7.22818 7.42996 7.68433 7.89419 8.13123 8.34988 8.35831 8.89544 9.57094 10.86643 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.004989 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.311790 B = 5610.477167 C = 6584.550072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 H 0.079 0.921 4 C -0.128 4.128 5 C -0.137 4.137 6 C 0.098 3.902 7 N -0.590 5.590 8 C 0.524 3.476 9 O -0.517 6.517 10 C 0.497 3.503 11 O -0.524 6.524 12 N -0.572 5.572 13 C 0.073 3.927 14 C -0.136 4.136 15 C -0.103 4.103 16 C 0.018 3.982 17 H 0.022 0.978 18 C -0.613 4.613 19 H 0.058 0.942 20 C 0.040 3.960 21 N -0.891 5.891 22 Si 1.028 2.972 23 H -0.285 1.285 24 H -0.284 1.284 25 H -0.263 1.263 26 C 0.105 3.895 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.269 0.731 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 8.151 -19.784 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.097 0.903 4 C -0.166 4.166 5 C -0.175 4.175 6 C -0.024 4.024 7 N -0.324 5.324 8 C 0.309 3.691 9 O -0.395 6.395 10 C 0.279 3.721 11 O -0.402 6.402 12 N -0.304 5.304 13 C -0.049 4.049 14 C -0.174 4.174 15 C -0.141 4.141 16 C -0.002 4.002 17 H 0.040 0.960 18 C -0.650 4.650 19 H 0.077 0.923 20 C -0.167 4.167 21 N -0.523 5.523 22 Si 0.856 3.144 23 H -0.211 1.211 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.015 4.015 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.676 6.960 -20.379 22.036 hybrid contribution -0.998 1.143 0.970 1.801 sum -5.675 8.103 -19.408 21.784 Atomic orbital electron populations 1.22147 0.94433 1.02483 1.03069 1.21686 0.94864 0.96532 0.84131 0.90288 1.22746 0.98028 0.99632 0.96227 1.22860 0.97890 1.01077 0.95661 1.22624 0.96788 0.87744 0.95263 1.48451 1.51268 1.28430 1.04263 1.20264 0.81064 0.84995 0.82792 1.90468 1.39915 1.27218 1.81860 1.19856 0.81714 0.86473 0.84091 1.90714 1.42349 1.24278 1.82836 1.48419 1.61019 1.15985 1.05002 1.22713 0.96514 0.82487 1.03142 1.22007 0.99026 0.98525 0.97864 1.21497 1.00442 0.96600 0.95532 1.19224 0.93075 0.92452 0.95453 0.95959 1.21787 1.43810 1.06759 0.92689 0.92331 1.25759 0.96447 0.91671 1.02856 1.70897 1.38432 1.31197 1.11762 0.84197 0.77354 0.76159 0.76717 1.21073 1.21067 1.18871 1.22791 0.99742 0.93977 0.84955 0.91031 0.91553 0.92403 0.89917 0.90297 0.90505 0.89561 0.88161 0.90809 0.91878 0.85451 0.91722 0.92345 0.92903 0.92654 0.92037 0.89387 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.11 37.16 0.34 -1.25 16 2 C 0.13 1.33 3.46 -66.94 -0.23 1.10 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -0.93 6.49 -24.89 -0.16 -1.09 16 5 C -0.14 -1.11 7.09 -24.59 -0.17 -1.28 16 6 C 0.10 1.17 5.96 -2.53 -0.02 1.15 16 7 N -0.59 -7.89 3.06 -163.52 -0.50 -8.39 16 8 C 0.52 8.59 7.56 -11.59 -0.09 8.51 16 9 O -0.52 -8.69 12.24 5.50 0.07 -8.62 16 10 C 0.50 9.59 7.68 -11.58 -0.09 9.50 16 11 O -0.52 -11.08 13.33 5.50 0.07 -11.01 16 12 N -0.57 -11.40 2.97 -173.27 -0.51 -11.92 16 13 C 0.07 1.26 5.98 -3.72 -0.02 1.23 16 14 C -0.14 -2.29 6.08 -26.62 -0.16 -2.46 16 15 C -0.10 -2.08 5.11 -26.69 -0.14 -2.22 16 16 C 0.02 0.42 1.86 -91.64 -0.17 0.25 16 17 H 0.02 0.55 6.70 -51.93 -0.35 0.21 16 18 C -0.61 -17.06 8.74 -34.44 -0.30 -17.36 16 19 H 0.06 1.73 7.99 -52.49 -0.42 1.32 16 20 C 0.04 1.16 5.24 -17.82 -0.09 1.07 16 21 N -0.89 -27.11 13.70 55.43 0.76 -26.35 16 22 Si 1.03 25.84 26.69 -169.99 -4.54 21.30 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.51 6.10 56.52 0.34 -6.17 16 26 C 0.11 2.42 5.43 -3.70 -0.02 2.40 16 27 H 0.07 0.86 6.89 -51.92 -0.36 0.50 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.51 7.84 -51.93 -0.41 0.10 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.42 6.35 -51.93 -0.33 1.09 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.13 2.13 4.33 -54.70 -0.24 1.89 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 43 H 0.09 2.21 4.65 -51.93 -0.24 1.97 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -31.47 337.39 -7.94 -39.41 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.05 Total: 0.93 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.33 Total: -0.44 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.26 Total: -46.65 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.14 Total: -19.63 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -4.54 Total: 21.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.47 -7.94 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.806 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds