Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87275 * 2 1 4 4 C 1.54324 * 109.88204 * 121.01188 * 2 1 3 5 5 C 1.55157 * 103.10325 * 97.13733 * 4 2 1 6 6 C 1.55387 * 101.36248 * 35.49262 * 5 4 2 7 7 N 1.47016 * 109.88400 * 238.81997 * 2 1 3 8 8 C 1.34785 * 125.64756 * 59.49098 * 7 2 1 9 9 O 1.21341 * 119.99663 * 359.97438 * 8 7 2 10 10 C 1.49452 * 119.99657 * 179.97438 * 8 7 2 11 11 O 1.21343 * 120.00260 * 6.67545 * 10 8 7 12 12 N 1.34780 * 119.99674 * 186.67157 * 10 8 7 13 13 C 1.46933 * 120.62624 * 8.36921 * 12 10 8 14 14 C 1.53622 * 108.54275 * 126.36653 * 13 12 10 15 15 C 1.53045 * 109.24414 * 54.84917 * 14 13 12 16 16 C 1.53037 * 109.53680 * 298.51195 * 15 14 13 17 17 H 1.08998 * 109.52911 * 301.39573 * 16 15 14 18 18 C 1.50699 * 109.49603 * 181.31369 * 16 15 14 19 19 H 1.08004 * 119.99834 * 0.16635 * 18 16 15 20 20 C 1.37878 * 120.00309 * 180.15963 * 18 16 15 21 21 N 1.31515 * 119.99556 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00243 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47223 * 120.00426 * 22 20 18 25 25 H 1.48508 * 109.46986 * 240.00303 * 22 20 18 26 26 C 1.46919 * 120.63072 * 188.64097 * 12 10 8 27 27 H 1.08996 * 109.47011 * 298.98716 * 1 2 3 28 28 H 1.09001 * 109.46819 * 58.98522 * 1 2 3 29 29 H 1.08996 * 109.46653 * 178.98546 * 1 2 3 30 30 H 1.08998 * 110.72346 * 215.58993 * 4 2 1 31 31 H 1.09004 * 110.72082 * 338.68568 * 4 2 1 32 32 H 1.09000 * 111.00456 * 153.66811 * 5 4 2 33 33 H 1.09003 * 110.99863 * 277.51823 * 5 4 2 34 34 H 1.09002 * 110.33922 * 204.16520 * 6 5 4 35 35 H 1.09005 * 110.34815 * 81.87825 * 6 5 4 36 36 H 1.09004 * 109.58177 * 246.19195 * 13 12 10 37 37 H 1.08994 * 109.59204 * 6.61742 * 13 12 10 38 38 H 1.08997 * 109.63364 * 294.85898 * 14 13 12 39 39 H 1.08993 * 109.43332 * 174.72035 * 14 13 12 40 40 H 1.09000 * 109.45753 * 178.48830 * 15 14 13 41 41 H 1.08997 * 109.45601 * 58.53486 * 15 14 13 42 42 H 0.97000 * 119.99874 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.58879 * 353.37602 * 26 12 10 44 44 H 1.09001 * 109.58553 * 113.80593 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 6 2.3511 -2.1704 0.7000 6 6 2.8568 -1.8508 -0.7340 7 7 2.0301 -0.7158 -1.1828 8 6 1.7743 -0.3888 -2.4651 9 8 1.0760 0.5705 -2.7189 10 6 2.3509 -1.2079 -3.5743 11 8 2.9471 -2.2346 -3.3238 12 7 2.2085 -0.8061 -4.8529 13 6 1.6534 0.5183 -5.1640 14 6 2.6354 1.2550 -6.0876 15 6 2.9189 0.3881 -7.3166 16 6 3.5662 -0.9271 -6.8769 17 1 4.4889 -0.7163 -6.3364 18 6 3.8744 -1.7663 -8.0901 19 1 3.6354 -1.3974 -9.0767 20 6 4.4616 -3.0047 -7.9407 21 7 4.7523 -3.4540 -6.7393 22 14 4.8443 -4.0446 -9.4446 23 1 4.4234 -3.3177 -10.6692 24 1 6.3042 -4.3101 -9.5043 25 1 4.1101 -5.3324 -9.3558 26 6 2.5999 -1.6864 -5.9622 27 1 -0.3633 0.4980 0.8989 28 1 -0.3633 0.5295 -0.8808 29 1 -0.3632 -1.0275 -0.0182 30 1 2.9657 -0.2808 1.6187 31 1 1.2929 -0.7834 2.0224 32 1 3.1247 -2.6611 1.2906 33 1 1.4437 -2.7735 0.6693 34 1 2.7088 -2.7100 -1.3882 35 1 3.9092 -1.5677 -0.7105 36 1 0.6924 0.4031 -5.6654 37 1 1.5213 1.0849 -4.2423 38 1 3.5667 1.4458 -5.5544 39 1 2.1960 2.2011 -6.4033 40 1 3.5945 0.9190 -7.9873 41 1 1.9840 0.1771 -7.8356 42 1 5.1651 -4.3254 -6.6341 43 1 3.0926 -2.5749 -5.5673 44 1 1.7145 -1.9777 -6.5273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329662182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -57.453680 kcal Electronic energy + Delta-G solvation = -25018.249904 eV Core-core repulsion = 21549.865175 eV Total energy + Delta-G solvation = -3468.384729 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68208 -38.89005 -37.41727 -36.71191 -33.30893 -31.99229 -31.60644 -31.20005 -29.71972 -26.17224 -25.80626 -25.00108 -23.63665 -22.07129 -21.65003 -20.52727 -19.33024 -18.52046 -17.04021 -16.62233 -16.25926 -15.76300 -15.58190 -15.04708 -14.50544 -14.22572 -13.81884 -13.52536 -13.48827 -13.36761 -13.15401 -12.88371 -12.66637 -12.57766 -12.28773 -12.15577 -12.10656 -11.75771 -11.43786 -11.15455 -10.98712 -10.89795 -10.80867 -10.59780 -10.43058 -10.26805 -10.00988 -9.80935 -9.16186 -9.10365 -8.81716 -8.47541 -8.38428 -7.79347 -6.01114 -4.09587 1.85853 2.61994 3.29434 3.37807 3.41287 3.67025 3.85119 4.37406 4.42938 4.46348 4.69707 4.76930 5.05294 5.20878 5.27061 5.29032 5.40908 5.56352 5.63578 5.66897 5.68353 5.75297 5.86371 5.89039 5.99127 6.04449 6.13472 6.23456 6.31419 6.38264 6.48240 6.61858 6.71556 6.87452 6.99854 7.07520 7.21077 7.36665 7.59792 7.82782 7.93639 7.98343 8.20026 8.36813 8.62576 8.94709 9.56002 11.04177 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.004333 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.943714 B = 6460.235271 C = 7430.143066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.129 4.129 5 C -0.135 4.135 6 C 0.092 3.908 7 N -0.590 5.590 8 C 0.523 3.477 9 O -0.520 6.520 10 C 0.497 3.503 11 O -0.517 6.517 12 N -0.570 5.570 13 C 0.071 3.929 14 C -0.133 4.133 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.030 0.970 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.109 3.891 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.124 0.876 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 5.904 15.026 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.167 4.167 5 C -0.173 4.173 6 C -0.030 4.030 7 N -0.324 5.324 8 C 0.308 3.692 9 O -0.398 6.398 10 C 0.278 3.722 11 O -0.394 6.394 12 N -0.302 5.302 13 C -0.051 4.051 14 C -0.171 4.171 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.011 4.011 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.466 5.720 14.999 17.306 hybrid contribution 0.245 -0.580 -0.878 1.080 sum -6.222 5.141 14.121 16.265 Atomic orbital electron populations 1.22151 0.94528 1.02474 1.02971 1.21644 0.94943 0.96343 0.84302 0.90495 1.22721 1.01786 0.95929 0.96288 1.22921 1.02083 0.96553 0.95719 1.22816 0.94540 0.90284 0.95353 1.48431 1.49444 1.30339 1.04223 1.20449 0.81242 0.84621 0.82843 1.90439 1.38738 1.28790 1.81799 1.19755 0.82134 0.86291 0.84038 1.90700 1.40628 1.25530 1.82580 1.48430 1.59131 1.17462 1.05143 1.22792 0.95794 0.83805 1.02744 1.22030 0.99121 0.98149 0.97815 1.21653 1.00161 0.97620 0.95564 1.18967 0.93727 0.90589 0.94582 0.95216 1.21136 1.40335 1.01811 0.92460 0.92226 1.25060 0.95249 0.97868 0.95883 1.69895 1.41833 1.19257 1.20907 0.86528 0.78013 0.80273 0.83154 1.19768 1.21000 1.20972 1.22473 0.97918 0.95468 0.85233 0.91752 0.90915 0.92447 0.90521 0.89933 0.89694 0.90633 0.87342 0.91014 0.92220 0.85638 0.92451 0.92177 0.93078 0.93183 0.92724 0.85786 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.05 37.16 0.34 -1.39 16 2 C 0.13 1.45 3.50 -66.95 -0.23 1.22 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.05 6.48 -24.90 -0.16 -1.21 16 5 C -0.13 -1.22 7.12 -24.32 -0.17 -1.39 16 6 C 0.09 1.20 6.18 -2.27 -0.01 1.19 16 7 N -0.59 -8.54 3.08 -163.22 -0.50 -9.04 16 8 C 0.52 9.21 7.55 -11.58 -0.09 9.12 16 9 O -0.52 -9.30 12.08 5.50 0.07 -9.24 16 10 C 0.50 10.31 7.69 -11.58 -0.09 10.22 16 11 O -0.52 -11.80 13.20 5.50 0.07 -11.73 16 12 N -0.57 -12.15 2.97 -173.01 -0.51 -12.66 16 13 C 0.07 1.30 6.02 -3.48 -0.02 1.28 16 14 C -0.13 -2.39 6.10 -26.38 -0.16 -2.55 16 15 C -0.11 -2.33 5.10 -26.69 -0.14 -2.47 16 16 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.52 -14.10 8.56 -34.44 -0.29 -14.40 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.40 11.39 55.43 0.63 -24.77 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.11 2.66 5.41 -3.71 -0.02 2.64 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.93 6.76 -51.93 -0.35 0.58 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.53 7.83 -51.93 -0.41 0.13 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.68 6.00 -51.93 -0.31 1.37 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.13 2.25 4.30 -54.88 -0.24 2.02 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.12 3.46 5.12 -51.93 -0.27 3.19 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -30.23 339.93 -8.53 -38.77 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.03 Total: 2.73 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.36 Total: 4.68 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.38 Total: -46.47 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.14 Total: -20.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.23 -8.53 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.687 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds