Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87275 * 2 1 4 4 C 1.54324 * 109.88204 * 121.01188 * 2 1 3 5 5 C 1.55157 * 103.10325 * 97.13733 * 4 2 1 6 6 C 1.55387 * 101.36248 * 35.49262 * 5 4 2 7 7 N 1.47016 * 109.88400 * 238.81997 * 2 1 3 8 8 C 1.34785 * 125.64756 * 59.49098 * 7 2 1 9 9 O 1.21341 * 119.99663 * 359.97438 * 8 7 2 10 10 C 1.49452 * 119.99657 * 179.97438 * 8 7 2 11 11 O 1.21343 * 120.00260 * 6.67545 * 10 8 7 12 12 N 1.34780 * 119.99674 * 186.67157 * 10 8 7 13 13 C 1.46933 * 120.62624 * 8.36921 * 12 10 8 14 14 C 1.53622 * 108.54275 * 126.36653 * 13 12 10 15 15 C 1.53045 * 109.24414 * 54.84917 * 14 13 12 16 16 C 1.53037 * 109.53680 * 298.51195 * 15 14 13 17 17 H 1.08998 * 109.52911 * 301.39573 * 16 15 14 18 18 C 1.50699 * 109.49603 * 181.31369 * 16 15 14 19 19 H 1.08004 * 119.99834 * 0.16635 * 18 16 15 20 20 C 1.37878 * 120.00309 * 180.15963 * 18 16 15 21 21 N 1.31515 * 119.99556 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00243 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47223 * 120.00426 * 22 20 18 25 25 H 1.48508 * 109.46986 * 240.00303 * 22 20 18 26 26 C 1.46919 * 120.63072 * 188.64097 * 12 10 8 27 27 H 1.08996 * 109.47011 * 298.98716 * 1 2 3 28 28 H 1.09001 * 109.46819 * 58.98522 * 1 2 3 29 29 H 1.08996 * 109.46653 * 178.98546 * 1 2 3 30 30 H 1.08998 * 110.72346 * 215.58993 * 4 2 1 31 31 H 1.09004 * 110.72082 * 338.68568 * 4 2 1 32 32 H 1.09000 * 111.00456 * 153.66811 * 5 4 2 33 33 H 1.09003 * 110.99863 * 277.51823 * 5 4 2 34 34 H 1.09002 * 110.33922 * 204.16520 * 6 5 4 35 35 H 1.09005 * 110.34815 * 81.87825 * 6 5 4 36 36 H 1.09004 * 109.58177 * 246.19195 * 13 12 10 37 37 H 1.08994 * 109.59204 * 6.61742 * 13 12 10 38 38 H 1.08997 * 109.63364 * 294.85898 * 14 13 12 39 39 H 1.08993 * 109.43332 * 174.72035 * 14 13 12 40 40 H 1.09000 * 109.45753 * 178.48830 * 15 14 13 41 41 H 1.08997 * 109.45601 * 58.53486 * 15 14 13 42 42 H 0.97000 * 119.99874 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.58879 * 353.37602 * 26 12 10 44 44 H 1.09001 * 109.58553 * 113.80593 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 6 2.3511 -2.1704 0.7000 6 6 2.8568 -1.8508 -0.7340 7 7 2.0301 -0.7158 -1.1828 8 6 1.7743 -0.3888 -2.4651 9 8 1.0760 0.5705 -2.7189 10 6 2.3509 -1.2079 -3.5743 11 8 2.9471 -2.2346 -3.3238 12 7 2.2085 -0.8061 -4.8529 13 6 1.6534 0.5183 -5.1640 14 6 2.6354 1.2550 -6.0876 15 6 2.9189 0.3881 -7.3166 16 6 3.5662 -0.9271 -6.8769 17 1 4.4889 -0.7163 -6.3364 18 6 3.8744 -1.7663 -8.0901 19 1 3.6354 -1.3974 -9.0767 20 6 4.4616 -3.0047 -7.9407 21 7 4.7523 -3.4540 -6.7393 22 14 4.8443 -4.0446 -9.4446 23 1 4.4234 -3.3177 -10.6692 24 1 6.3042 -4.3101 -9.5043 25 1 4.1101 -5.3324 -9.3558 26 6 2.5999 -1.6864 -5.9622 27 1 -0.3633 0.4980 0.8989 28 1 -0.3633 0.5295 -0.8808 29 1 -0.3632 -1.0275 -0.0182 30 1 2.9657 -0.2808 1.6187 31 1 1.2929 -0.7834 2.0224 32 1 3.1247 -2.6611 1.2906 33 1 1.4437 -2.7735 0.6693 34 1 2.7088 -2.7100 -1.3882 35 1 3.9092 -1.5677 -0.7105 36 1 0.6924 0.4031 -5.6654 37 1 1.5213 1.0849 -4.2423 38 1 3.5667 1.4458 -5.5544 39 1 2.1960 2.2011 -6.4033 40 1 3.5945 0.9190 -7.9873 41 1 1.9840 0.1771 -7.8356 42 1 5.1651 -4.3254 -6.6341 43 1 3.0926 -2.5749 -5.5673 44 1 1.7145 -1.9777 -6.5273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329662182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -75.844747 kcal Electronic energy + Delta-G solvation = -25019.047400 eV Core-core repulsion = 21549.865175 eV Total energy + Delta-G solvation = -3469.182225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07736 -40.27429 -38.76385 -38.35720 -35.25655 -33.54908 -32.87894 -32.10792 -31.56359 -27.75600 -26.96614 -26.67519 -25.03563 -23.63022 -23.01107 -21.73950 -20.76038 -20.01829 -18.62518 -18.21155 -17.80080 -17.23454 -17.01199 -16.50649 -16.28488 -15.67017 -15.25237 -15.03080 -14.78291 -14.63635 -14.45313 -14.37138 -14.09698 -13.94084 -13.56424 -13.46540 -13.30793 -12.95861 -12.92442 -12.84929 -12.48039 -12.30643 -12.23873 -12.01411 -11.73752 -11.70848 -11.52795 -11.44549 -11.10337 -10.98158 -10.56057 -10.16550 -9.79210 -9.53502 -8.12175 -6.29248 0.35698 1.26798 1.41019 1.42170 1.54156 2.12561 2.39368 2.46115 3.12819 3.18005 3.60096 3.68189 4.00353 4.10071 4.14623 4.20614 4.31216 4.34176 4.44699 4.56273 4.59255 4.70115 4.78709 4.84015 4.84768 4.92857 4.95790 5.03677 5.06026 5.11475 5.16262 5.21184 5.24655 5.27438 5.29587 5.41178 5.50820 5.56803 5.82997 5.93098 6.08587 6.27115 6.37224 6.67656 6.82659 6.99658 7.40760 8.91864 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.004333 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.943714 B = 6460.235271 C = 7430.143066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 H 0.080 0.920 4 C -0.116 4.116 5 C -0.123 4.123 6 C 0.083 3.917 7 N -0.584 5.584 8 C 0.526 3.474 9 O -0.525 6.525 10 C 0.486 3.514 11 O -0.548 6.548 12 N -0.578 5.578 13 C 0.071 3.929 14 C -0.125 4.125 15 C -0.106 4.106 16 C 0.039 3.961 17 H -0.011 1.011 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.914 5.914 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.122 3.878 27 H 0.095 0.905 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.261 0.739 43 H 0.086 0.914 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 7.099 16.385 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.039 4.039 7 N -0.317 5.317 8 C 0.309 3.691 9 O -0.405 6.405 10 C 0.268 3.732 11 O -0.427 6.427 12 N -0.310 5.310 13 C -0.049 4.049 14 C -0.163 4.163 15 C -0.143 4.143 16 C 0.020 3.980 17 H 0.007 0.993 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.553 5.553 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.207 1.207 26 C 0.001 3.999 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.153 0.847 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.513 6.943 16.390 19.320 hybrid contribution 0.589 -0.962 -1.240 1.676 sum -6.924 5.981 15.150 17.698 Atomic orbital electron populations 1.22115 0.93865 1.02312 1.03301 1.22034 0.95547 0.96637 0.83934 0.90175 1.22752 1.03239 0.94260 0.95158 1.22906 1.02770 0.97653 0.92767 1.22904 0.94573 0.88824 0.97578 1.48558 1.48533 1.30579 1.04008 1.19677 0.81700 0.84413 0.83277 1.90415 1.39220 1.28818 1.82006 1.20480 0.81576 0.86348 0.84766 1.90687 1.41812 1.26958 1.83239 1.48466 1.59385 1.18257 1.04862 1.22994 0.96208 0.82227 1.03510 1.21996 0.98942 0.99169 0.96183 1.21545 1.00055 0.95766 0.96974 1.18901 0.92521 0.92851 0.93742 0.99325 1.21513 1.40306 1.02351 0.93247 0.91931 1.25884 0.95105 0.99176 0.98616 1.70073 1.42605 1.19505 1.23081 0.85480 0.77683 0.78488 0.79859 1.18620 1.20772 1.20677 1.21947 0.97149 0.94839 0.86000 0.88611 0.93477 0.92711 0.89011 0.87111 0.87366 0.90324 0.90428 0.91254 0.90960 0.84671 0.93408 0.88149 0.92671 0.92393 0.92957 0.89540 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.05 71.98 0.65 -2.31 16 2 C 0.12 2.39 3.50 45.34 0.16 2.55 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -1.46 6.48 31.78 0.21 -1.25 16 5 C -0.12 -1.93 7.12 32.15 0.23 -1.70 16 6 C 0.08 2.17 6.18 87.02 0.54 2.71 16 7 N -0.58 -16.64 3.08 -788.67 -2.43 -19.07 16 8 C 0.53 18.68 7.55 87.27 0.66 19.34 16 9 O -0.53 -18.54 12.08 -3.22 -0.04 -18.58 16 10 C 0.49 21.03 7.69 87.27 0.67 21.71 16 11 O -0.55 -26.65 13.20 -3.23 -0.04 -26.70 16 12 N -0.58 -25.43 2.97 -819.64 -2.43 -27.87 16 13 C 0.07 2.57 6.02 86.51 0.52 3.09 16 14 C -0.12 -4.32 6.10 30.82 0.19 -4.14 16 15 C -0.11 -4.36 5.10 30.62 0.16 -4.20 16 16 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 17 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 18 C -0.54 -29.81 8.56 25.60 0.22 -29.59 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 20 C 0.01 0.66 5.30 84.65 0.45 1.11 16 21 N -0.91 -54.99 11.39 21.45 0.24 -54.74 16 22 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.12 6.26 5.41 86.37 0.47 6.73 16 27 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.14 6.76 -2.39 -0.02 1.12 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.86 7.83 -2.39 -0.02 0.84 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 2.54 6.00 -2.39 -0.01 2.53 16 35 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.14 4.71 4.30 -49.09 -0.21 4.50 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.09 5.13 5.12 -2.39 -0.01 5.12 16 44 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.42 339.93 3.20 -66.22 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.78 Total: 18.53 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.09 Total: 16.04 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.62 Total: -101.68 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -0.08 Total: -45.28 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.42 3.20 -66.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.627 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds