Wall clock time and date at job start Tue Mar 31 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.41156 * 2 1 4 4 C 1.55131 * 110.33910 * 122.43553 * 2 1 3 5 5 C 1.55159 * 101.48444 * 156.06080 * 4 2 1 6 6 C 1.54333 * 102.93899 * 324.33303 * 5 4 2 7 7 N 1.47015 * 107.27176 * 22.19362 * 6 5 4 8 8 C 1.34775 * 125.64912 * 181.02244 * 7 6 5 9 9 O 1.21358 * 120.00100 * 180.02562 * 8 7 6 10 10 C 1.49450 * 119.99873 * 0.02562 * 8 7 6 11 11 O 1.21344 * 120.00109 * 353.38974 * 10 8 7 12 12 N 1.34775 * 119.99844 * 173.39134 * 10 8 7 13 13 C 1.46923 * 120.63385 * 351.35625 * 12 10 8 14 14 C 1.53195 * 108.77852 * 233.63214 * 13 12 10 15 15 C 1.53045 * 109.31000 * 305.36322 * 14 13 12 16 16 C 1.53041 * 109.53641 * 61.36108 * 15 14 13 17 17 H 1.09001 * 109.52152 * 58.60584 * 16 15 14 18 18 C 1.50707 * 109.49450 * 178.68213 * 16 15 14 19 19 H 1.07998 * 119.99747 * 31.07035 * 18 16 15 20 20 C 1.37876 * 119.99662 * 211.06955 * 18 16 15 21 21 N 1.31509 * 120.00562 * 350.91313 * 20 18 16 22 22 Si 1.86805 * 119.99499 * 170.91324 * 20 18 16 23 23 H 1.48501 * 109.47155 * 60.00035 * 22 20 18 24 24 H 1.48499 * 109.47110 * 299.99654 * 22 20 18 25 25 H 1.48497 * 109.46888 * 180.02562 * 22 20 18 26 26 C 1.46929 * 120.63088 * 171.37448 * 12 10 8 27 27 H 1.08996 * 109.47057 * 180.84973 * 1 2 3 28 28 H 1.09001 * 109.47091 * 300.84590 * 1 2 3 29 29 H 1.09001 * 109.47097 * 60.84487 * 1 2 3 30 30 H 1.08997 * 111.19275 * 37.96207 * 4 2 1 31 31 H 1.08996 * 110.94509 * 274.04961 * 4 2 1 32 32 H 1.08995 * 110.72259 * 205.97169 * 5 4 2 33 33 H 1.09005 * 110.72161 * 82.69272 * 5 4 2 34 34 H 1.09001 * 109.88344 * 262.77246 * 6 5 4 35 35 H 1.09003 * 109.87944 * 141.60914 * 6 5 4 36 36 H 1.09001 * 109.58469 * 353.41461 * 13 12 10 37 37 H 1.08996 * 109.58980 * 113.84089 * 13 12 10 38 38 H 1.09003 * 109.49583 * 65.31086 * 14 13 12 39 39 H 1.08992 * 109.49833 * 185.41330 * 14 13 12 40 40 H 1.08998 * 109.45710 * 301.34652 * 15 14 13 41 41 H 1.08997 * 109.45844 * 181.38706 * 15 14 13 42 42 H 0.97005 * 119.99677 * 3.81770 * 21 20 18 43 43 H 1.09000 * 109.58202 * 6.58767 * 26 12 10 44 44 H 1.08997 * 109.59084 * 246.16128 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4797 -1.1972 0.7335 6 6 3.2524 -1.4726 -0.7679 7 7 2.0431 -0.7386 -1.1682 8 6 1.4972 -0.7365 -2.4004 9 8 0.4932 -0.0906 -2.6182 10 6 2.1285 -1.5297 -3.4986 11 8 3.1954 -2.0778 -3.3151 12 7 1.5127 -1.6361 -4.6927 13 6 0.1410 -1.1420 -4.8743 14 6 -0.7183 -2.2725 -5.4493 15 6 -0.0667 -2.8029 -6.7286 16 6 1.3179 -3.3668 -6.4018 17 1 1.2221 -4.1625 -5.6630 18 6 1.9454 -3.9181 -7.6562 19 1 1.7164 -3.4751 -8.6141 20 6 2.8117 -4.9881 -7.5808 21 7 3.2305 -5.4139 -6.4092 22 14 3.3905 -5.8329 -9.1432 23 1 4.1044 -4.8529 -10.0005 24 1 2.2179 -6.3718 -9.8780 25 1 4.3086 -6.9462 -8.7928 26 6 2.2002 -2.2488 -5.8376 27 1 -0.3633 -1.0275 0.0152 28 1 -0.3633 0.5269 0.8823 29 1 -0.3633 0.5007 -0.8975 30 1 1.4549 -1.6553 1.4392 31 1 2.1372 -0.1325 2.1017 32 1 3.8162 -2.0993 1.2444 33 1 4.1930 -0.3848 0.8730 34 1 3.1089 -2.5406 -0.9314 35 1 4.1081 -1.1190 -1.3433 36 1 -0.2646 -0.8279 -3.9126 37 1 0.1448 -0.2986 -5.5647 38 1 -0.7954 -3.0782 -4.7193 39 1 -1.7136 -1.8922 -5.6787 40 1 0.0327 -1.9910 -7.4490 41 1 -0.6889 -3.5907 -7.1532 42 1 2.8874 -5.0115 -5.5960 43 1 3.1533 -2.6649 -5.5113 44 1 2.3720 -1.4956 -6.6065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329662184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:27 Heat of formation + Delta-G solvation = -62.254143 kcal Electronic energy + Delta-G solvation = -25017.856995 eV Core-core repulsion = 21549.264103 eV Total energy + Delta-G solvation = -3468.592892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83322 -39.04399 -37.50959 -36.90025 -33.57061 -32.02751 -31.71607 -31.47170 -29.77758 -26.29133 -25.69660 -24.64516 -23.72617 -22.09791 -21.70399 -20.95200 -19.63201 -18.55955 -17.09195 -17.05142 -16.50153 -15.99446 -15.65997 -15.02140 -14.34115 -14.15088 -13.88115 -13.77459 -13.71250 -13.54294 -13.46661 -13.12782 -12.84003 -12.64468 -12.29154 -12.20985 -11.96045 -11.60293 -11.45775 -11.37078 -11.17835 -10.96520 -10.82681 -10.75112 -10.50669 -10.18590 -10.12123 -9.95557 -9.27495 -8.91911 -8.78088 -8.55544 -8.39816 -7.91809 -6.38971 -4.10340 1.71161 2.48663 3.43710 3.44764 3.50496 3.64319 3.67989 4.27540 4.37045 4.52174 4.62139 4.65386 5.02442 5.07777 5.20476 5.32783 5.38786 5.49774 5.52468 5.56644 5.59996 5.69480 5.77734 5.85921 5.91932 5.97077 6.01612 6.09819 6.24674 6.29809 6.35869 6.40320 6.55224 6.67391 6.77166 6.85423 6.93393 7.25212 7.36979 7.50109 7.73878 7.95276 8.18209 8.41446 8.42889 8.84972 9.62802 11.00339 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.004239 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.703173 B = 6603.804195 C = 7505.003999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.079 0.921 4 C -0.130 4.130 5 C -0.136 4.136 6 C 0.106 3.894 7 N -0.591 5.591 8 C 0.525 3.475 9 O -0.517 6.517 10 C 0.496 3.504 11 O -0.523 6.523 12 N -0.572 5.572 13 C 0.073 3.927 14 C -0.135 4.135 15 C -0.106 4.106 16 C 0.024 3.976 17 H 0.036 0.964 18 C -0.600 4.600 19 H 0.052 0.948 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 1.068 2.932 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.283 1.283 26 C 0.112 3.888 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.273 0.727 43 H 0.085 0.915 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 10.472 14.275 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.028 3.972 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.174 4.174 6 C -0.017 4.017 7 N -0.325 5.325 8 C 0.310 3.690 9 O -0.395 6.395 10 C 0.277 3.723 11 O -0.401 6.401 12 N -0.304 5.304 13 C -0.048 4.048 14 C -0.174 4.174 15 C -0.144 4.144 16 C 0.004 3.996 17 H 0.054 0.946 18 C -0.638 4.638 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.537 5.537 22 Si 0.896 3.104 23 H -0.214 1.214 24 H -0.214 1.214 25 H -0.208 1.208 26 C -0.008 4.008 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.006 9.308 13.590 16.744 hybrid contribution -0.960 1.235 0.440 1.624 sum -3.966 10.542 14.030 17.992 Atomic orbital electron populations 1.22201 0.93620 1.02898 1.03757 1.22080 0.95497 0.95542 0.84048 0.90317 1.22918 0.96476 1.00637 0.96797 1.22727 0.97183 1.02580 0.94882 1.22194 0.87208 0.97659 0.94611 1.48423 1.28160 1.47481 1.08462 1.20302 0.83859 0.82311 0.82506 1.90415 1.24584 1.43742 1.80733 1.19867 0.86015 0.82575 0.83830 1.90739 1.22432 1.46102 1.80780 1.48433 1.15405 1.56698 1.09870 1.22707 0.81050 0.96043 1.05046 1.21998 0.98112 0.98112 0.99134 1.21613 0.98338 0.99446 0.95003 1.19179 0.90721 0.92711 0.96981 0.94576 1.21836 1.31510 1.17845 0.92595 0.93011 1.25886 0.93995 0.95237 1.03222 1.70789 1.39602 1.44904 0.98384 0.83559 0.76301 0.76378 0.74150 1.21419 1.21403 1.20795 1.22591 0.98203 0.96028 0.83975 0.92509 0.91953 0.89319 0.90313 0.89769 0.89744 0.90537 0.90302 0.90062 0.85460 0.92094 0.92484 0.91905 0.93313 0.92709 0.91537 0.89617 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.71 37.16 0.32 -1.44 16 2 C 0.13 1.38 3.78 -66.30 -0.25 1.13 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.04 6.51 -24.46 -0.16 -1.20 16 5 C -0.14 -1.15 6.95 -24.89 -0.17 -1.33 16 6 C 0.11 1.34 5.49 -3.06 -0.02 1.32 16 7 N -0.59 -8.23 3.24 -163.41 -0.53 -8.76 16 8 C 0.53 8.87 7.55 -11.59 -0.09 8.78 16 9 O -0.52 -8.77 10.83 5.49 0.06 -8.71 16 10 C 0.50 9.89 7.69 -11.59 -0.09 9.80 16 11 O -0.52 -11.52 13.61 5.50 0.07 -11.44 16 12 N -0.57 -11.69 2.97 -173.28 -0.51 -12.20 16 13 C 0.07 1.30 5.98 -3.71 -0.02 1.28 16 14 C -0.14 -2.39 6.08 -26.61 -0.16 -2.56 16 15 C -0.11 -2.21 5.15 -26.69 -0.14 -2.35 16 16 C 0.02 0.58 1.93 -91.65 -0.18 0.41 16 17 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 18 C -0.60 -16.49 8.30 -34.44 -0.29 -16.77 16 19 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 20 C 0.02 0.64 5.44 -17.82 -0.10 0.54 16 21 N -0.90 -27.30 13.62 55.43 0.75 -26.55 16 22 Si 1.07 24.97 29.91 -169.99 -5.08 19.89 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.11 2.63 5.69 -3.71 -0.02 2.61 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.13 5.89 -51.93 -0.31 0.83 16 30 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 35 H 0.08 1.12 7.56 -51.93 -0.39 0.72 16 36 H 0.13 2.19 4.31 -54.80 -0.24 1.95 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.27 8.38 6.60 -40.82 -0.27 8.11 16 43 H 0.09 2.26 6.87 -51.93 -0.36 1.90 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -31.16 340.09 -8.48 -39.64 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.01 Total: 2.78 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.35 Total: 0.23 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.29 Total: -47.51 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.13 Total: -20.15 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.16 -8.48 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.613 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds