Wall clock time and date at job start Tue Mar 31 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.41156 * 2 1 4 4 C 1.55131 * 110.33910 * 122.43553 * 2 1 3 5 5 C 1.55159 * 101.48444 * 156.06080 * 4 2 1 6 6 C 1.54333 * 102.93899 * 324.33303 * 5 4 2 7 7 N 1.47015 * 107.27176 * 22.19362 * 6 5 4 8 8 C 1.34775 * 125.64912 * 181.02244 * 7 6 5 9 9 O 1.21358 * 120.00100 * 180.02562 * 8 7 6 10 10 C 1.49450 * 119.99873 * 0.02562 * 8 7 6 11 11 O 1.21344 * 120.00109 * 353.38974 * 10 8 7 12 12 N 1.34775 * 119.99844 * 173.39134 * 10 8 7 13 13 C 1.46923 * 120.63385 * 351.35625 * 12 10 8 14 14 C 1.53195 * 108.77852 * 233.63214 * 13 12 10 15 15 C 1.53045 * 109.31000 * 305.36322 * 14 13 12 16 16 C 1.53041 * 109.53641 * 61.36108 * 15 14 13 17 17 H 1.09001 * 109.52152 * 58.60584 * 16 15 14 18 18 C 1.50707 * 109.49450 * 178.68213 * 16 15 14 19 19 H 1.07998 * 119.99747 * 31.07035 * 18 16 15 20 20 C 1.37876 * 119.99662 * 211.06955 * 18 16 15 21 21 N 1.31509 * 120.00562 * 350.91313 * 20 18 16 22 22 Si 1.86805 * 119.99499 * 170.91324 * 20 18 16 23 23 H 1.48501 * 109.47155 * 60.00035 * 22 20 18 24 24 H 1.48499 * 109.47110 * 299.99654 * 22 20 18 25 25 H 1.48497 * 109.46888 * 180.02562 * 22 20 18 26 26 C 1.46929 * 120.63088 * 171.37448 * 12 10 8 27 27 H 1.08996 * 109.47057 * 180.84973 * 1 2 3 28 28 H 1.09001 * 109.47091 * 300.84590 * 1 2 3 29 29 H 1.09001 * 109.47097 * 60.84487 * 1 2 3 30 30 H 1.08997 * 111.19275 * 37.96207 * 4 2 1 31 31 H 1.08996 * 110.94509 * 274.04961 * 4 2 1 32 32 H 1.08995 * 110.72259 * 205.97169 * 5 4 2 33 33 H 1.09005 * 110.72161 * 82.69272 * 5 4 2 34 34 H 1.09001 * 109.88344 * 262.77246 * 6 5 4 35 35 H 1.09003 * 109.87944 * 141.60914 * 6 5 4 36 36 H 1.09001 * 109.58469 * 353.41461 * 13 12 10 37 37 H 1.08996 * 109.58980 * 113.84089 * 13 12 10 38 38 H 1.09003 * 109.49583 * 65.31086 * 14 13 12 39 39 H 1.08992 * 109.49833 * 185.41330 * 14 13 12 40 40 H 1.08998 * 109.45710 * 301.34652 * 15 14 13 41 41 H 1.08997 * 109.45844 * 181.38706 * 15 14 13 42 42 H 0.97005 * 119.99677 * 3.81770 * 21 20 18 43 43 H 1.09000 * 109.58202 * 6.58767 * 26 12 10 44 44 H 1.08997 * 109.59084 * 246.16128 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4797 -1.1972 0.7335 6 6 3.2524 -1.4726 -0.7679 7 7 2.0431 -0.7386 -1.1682 8 6 1.4972 -0.7365 -2.4004 9 8 0.4932 -0.0906 -2.6182 10 6 2.1285 -1.5297 -3.4986 11 8 3.1954 -2.0778 -3.3151 12 7 1.5127 -1.6361 -4.6927 13 6 0.1410 -1.1420 -4.8743 14 6 -0.7183 -2.2725 -5.4493 15 6 -0.0667 -2.8029 -6.7286 16 6 1.3179 -3.3668 -6.4018 17 1 1.2221 -4.1625 -5.6630 18 6 1.9454 -3.9181 -7.6562 19 1 1.7164 -3.4751 -8.6141 20 6 2.8117 -4.9881 -7.5808 21 7 3.2305 -5.4139 -6.4092 22 14 3.3905 -5.8329 -9.1432 23 1 4.1044 -4.8529 -10.0005 24 1 2.2179 -6.3718 -9.8780 25 1 4.3086 -6.9462 -8.7928 26 6 2.2002 -2.2488 -5.8376 27 1 -0.3633 -1.0275 0.0152 28 1 -0.3633 0.5269 0.8823 29 1 -0.3633 0.5007 -0.8975 30 1 1.4549 -1.6553 1.4392 31 1 2.1372 -0.1325 2.1017 32 1 3.8162 -2.0993 1.2444 33 1 4.1930 -0.3848 0.8730 34 1 3.1089 -2.5406 -0.9314 35 1 4.1081 -1.1190 -1.3433 36 1 -0.2646 -0.8279 -3.9126 37 1 0.1448 -0.2986 -5.5647 38 1 -0.7954 -3.0782 -4.7193 39 1 -1.7136 -1.8922 -5.6787 40 1 0.0327 -1.9910 -7.4490 41 1 -0.6889 -3.5907 -7.1532 42 1 2.8874 -5.0115 -5.5960 43 1 3.1533 -2.6649 -5.5113 44 1 2.3720 -1.4956 -6.6065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329662184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:27 Heat of formation + Delta-G solvation = -81.660768 kcal Electronic energy + Delta-G solvation = -25018.698530 eV Core-core repulsion = 21549.264103 eV Total energy + Delta-G solvation = -3469.434427 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19625 -40.41251 -38.82852 -38.48927 -35.53432 -33.56278 -32.91837 -32.37120 -31.62641 -27.76243 -26.78527 -26.52556 -25.10078 -23.74044 -22.99258 -22.04512 -21.14575 -20.00042 -18.98999 -18.27012 -17.90490 -17.48297 -17.08306 -16.31734 -16.06252 -15.65376 -15.39507 -15.28627 -14.98519 -14.95440 -14.73007 -14.49169 -14.18675 -13.91519 -13.59872 -13.45125 -13.35055 -13.04132 -12.80210 -12.73750 -12.60852 -12.29927 -12.15206 -11.95558 -11.89765 -11.72676 -11.62545 -11.60201 -11.20635 -10.73417 -10.61471 -10.14912 -9.87009 -9.66259 -8.66040 -6.37462 0.25447 1.16501 1.52909 1.61055 1.79944 2.01422 2.30195 2.56987 3.02783 3.16884 3.54282 3.65895 3.93516 3.97286 4.04522 4.14426 4.16133 4.28164 4.37913 4.39720 4.49054 4.61252 4.64335 4.70515 4.72813 4.84557 4.85175 4.91250 4.96420 5.00817 5.04775 5.09913 5.11974 5.16332 5.26977 5.33056 5.47619 5.48275 5.57023 5.98602 6.05039 6.16176 6.21511 6.52474 6.60972 6.86712 7.44789 8.72380 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.004239 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.703173 B = 6603.804195 C = 7505.003999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 H 0.094 0.906 4 C -0.119 4.119 5 C -0.124 4.124 6 C 0.099 3.901 7 N -0.585 5.585 8 C 0.527 3.473 9 O -0.519 6.519 10 C 0.485 3.515 11 O -0.554 6.554 12 N -0.579 5.579 13 C 0.074 3.926 14 C -0.127 4.127 15 C -0.100 4.100 16 C 0.020 3.980 17 H -0.002 1.002 18 C -0.608 4.608 19 H 0.055 0.945 20 C -0.031 4.031 21 N -0.932 5.932 22 Si 1.116 2.884 23 H -0.269 1.269 24 H -0.267 1.267 25 H -0.288 1.288 26 C 0.129 3.871 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.254 0.746 43 H 0.045 0.955 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 12.183 15.417 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.111 0.889 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.024 4.024 7 N -0.318 5.318 8 C 0.311 3.689 9 O -0.398 6.398 10 C 0.268 3.732 11 O -0.433 6.433 12 N -0.311 5.311 13 C -0.046 4.046 14 C -0.165 4.165 15 C -0.138 4.138 16 C 0.001 3.999 17 H 0.016 0.984 18 C -0.646 4.646 19 H 0.073 0.927 20 C -0.230 4.230 21 N -0.569 5.569 22 Si 0.937 3.063 23 H -0.194 1.194 24 H -0.192 1.192 25 H -0.214 1.214 26 C 0.007 3.993 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.215 11.056 14.768 18.923 hybrid contribution -0.594 0.742 0.141 0.961 sum -4.808 11.798 14.909 19.611 Atomic orbital electron populations 1.22143 0.93440 1.02317 1.04087 1.22483 0.95749 0.96273 0.83481 0.88858 1.22944 0.95358 1.00865 0.96473 1.22727 0.98249 1.04043 0.91138 1.22289 0.86174 0.96115 0.97809 1.48570 1.28094 1.46953 1.08228 1.19557 0.84089 0.82415 0.82866 1.90401 1.24533 1.43958 1.80897 1.20609 0.85769 0.82330 0.84489 1.90717 1.23865 1.47281 1.81450 1.48442 1.16516 1.56702 1.09392 1.22918 0.79239 0.96310 1.06129 1.21955 0.99769 0.97753 0.96989 1.21495 0.95801 0.99554 0.96924 1.19146 0.93406 0.92215 0.95158 0.98386 1.22233 1.30917 1.17804 0.93661 0.92698 1.27378 0.94209 0.96219 1.05151 1.70927 1.41335 1.46007 0.98610 0.82961 0.76647 0.75657 0.71032 1.19433 1.19227 1.21371 1.22018 0.96428 0.95725 0.85156 0.93585 0.88877 0.91575 0.90353 0.86294 0.88246 0.88700 0.92659 0.91766 0.84360 0.90547 0.93650 0.87891 0.92277 0.93009 0.93509 0.93603 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.71 71.98 0.63 -2.42 16 2 C 0.12 2.26 3.78 45.55 0.17 2.43 16 3 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.12 -1.47 6.51 32.06 0.21 -1.26 16 5 C -0.12 -1.80 6.95 31.79 0.22 -1.58 16 6 C 0.10 2.51 5.49 86.73 0.48 2.99 16 7 N -0.59 -16.00 3.24 -789.28 -2.56 -18.56 16 8 C 0.53 17.88 7.55 87.27 0.66 18.54 16 9 O -0.52 -17.18 10.83 -3.27 -0.04 -17.21 16 10 C 0.49 20.17 7.69 87.27 0.67 20.84 16 11 O -0.55 -26.06 13.61 -3.23 -0.04 -26.11 16 12 N -0.58 -24.31 2.97 -820.50 -2.44 -26.75 16 13 C 0.07 2.56 5.98 86.36 0.52 3.08 16 14 C -0.13 -4.31 6.08 30.67 0.19 -4.12 16 15 C -0.10 -4.13 5.15 30.62 0.16 -3.97 16 16 C 0.02 1.04 1.93 -11.46 -0.02 1.02 16 17 H 0.00 -0.13 6.79 -2.39 -0.02 -0.14 16 18 C -0.61 -34.21 8.30 25.60 0.21 -33.99 16 19 H 0.05 2.99 7.83 -2.91 -0.02 2.97 16 20 C -0.03 -1.79 5.44 84.66 0.46 -1.33 16 21 N -0.93 -59.13 13.62 21.45 0.29 -58.84 16 22 Si 1.12 50.69 29.91 68.60 2.05 52.74 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 C 0.13 6.31 5.69 86.36 0.49 6.80 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.57 5.89 -2.39 -0.01 1.56 16 30 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 1.66 7.74 -2.39 -0.02 1.64 16 35 H 0.06 1.84 7.56 -2.39 -0.02 1.82 16 36 H 0.14 4.57 4.31 -47.90 -0.21 4.36 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.25 16.74 6.60 -92.70 -0.61 16.13 16 43 H 0.05 2.59 6.87 -2.39 -0.02 2.57 16 44 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -72.05 340.09 3.25 -68.80 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.94 Total: 18.91 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.04 Total: 7.02 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -4.70 Total: -104.15 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.08 Total: -43.32 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 2.05 Total: 52.74 kcal Total: -72.05 3.25 -68.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.861 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds