Wall clock time and date at job start Tue Mar 31 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99724 * 2 1 4 4 C 1.54338 * 109.98829 * 238.95628 * 2 1 3 5 5 C 1.55158 * 103.01715 * 218.66644 * 4 2 1 6 6 C 1.54904 * 101.58414 * 35.30788 * 5 4 2 7 7 N 1.47028 * 109.87948 * 121.09259 * 2 1 3 8 8 C 1.34770 * 125.64646 * 298.38574 * 7 2 1 9 9 O 1.21349 * 120.00633 * 359.72708 * 8 7 2 10 10 C 1.49460 * 119.99529 * 179.71905 * 8 7 2 11 11 O 1.21344 * 120.00262 * 353.58507 * 10 8 7 12 12 N 1.34777 * 119.99261 * 173.58197 * 10 8 7 13 13 C 1.46919 * 120.63613 * 352.82279 * 12 10 8 14 14 C 1.53201 * 108.89129 * 126.47061 * 13 12 10 15 15 C 1.53039 * 109.31074 * 54.56851 * 14 13 12 16 16 C 1.53045 * 109.53723 * 298.63086 * 15 14 13 17 17 H 1.08998 * 109.49655 * 301.42315 * 16 15 14 18 18 C 1.50699 * 109.49599 * 181.31929 * 16 15 14 19 19 H 1.08000 * 120.00084 * 0.02562 * 18 16 15 20 20 C 1.37881 * 119.99692 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99787 * 359.97438 * 20 18 16 22 22 Si 1.86791 * 119.99815 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47122 * 89.99695 * 22 20 18 24 24 H 1.48505 * 109.47413 * 209.99607 * 22 20 18 25 25 H 1.48501 * 109.47296 * 330.00138 * 22 20 18 26 26 C 1.46963 * 120.64676 * 172.65340 * 12 10 8 27 27 H 1.09005 * 109.46854 * 300.36418 * 1 2 3 28 28 H 1.08999 * 109.47082 * 60.36187 * 1 2 3 29 29 H 1.09007 * 109.47240 * 180.36737 * 1 2 3 30 30 H 1.08995 * 110.84488 * 100.19942 * 4 2 1 31 31 H 1.08993 * 110.66721 * 337.05077 * 4 2 1 32 32 H 1.08998 * 111.00273 * 277.23044 * 5 4 2 33 33 H 1.09006 * 111.03380 * 153.40099 * 5 4 2 34 34 H 1.08999 * 110.36482 * 204.14722 * 6 5 4 35 35 H 1.09000 * 110.45730 * 81.87533 * 6 5 4 36 36 H 1.08998 * 109.58670 * 6.61475 * 13 12 10 37 37 H 1.08999 * 109.59383 * 246.32824 * 13 12 10 38 38 H 1.08999 * 109.49319 * 174.51934 * 14 13 12 39 39 H 1.08994 * 109.49490 * 294.58317 * 14 13 12 40 40 H 1.08997 * 109.46130 * 58.65465 * 15 14 13 41 41 H 1.08996 * 109.45601 * 178.61495 * 15 14 13 42 42 H 0.97006 * 119.99910 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.46716 * 113.74809 * 26 12 10 44 44 H 1.08994 * 109.71513 * 353.45484 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7480 -1.2427 5 6 3.2863 -1.5185 -0.6913 6 6 2.8099 -1.8825 0.7370 7 7 2.0300 -0.7140 1.1840 8 6 1.8074 -0.3618 2.4657 9 8 1.1472 0.6245 2.7181 10 6 2.3737 -1.1863 3.5763 11 8 2.9337 -2.2341 3.3295 12 7 2.2624 -0.7658 4.8519 13 6 1.7296 0.5691 5.1564 14 6 0.5747 0.4268 6.1528 15 6 1.0571 -0.3519 7.3789 16 6 1.5028 -1.7526 6.9528 17 1 0.6709 -2.2690 6.4738 18 6 1.9471 -2.5295 8.1652 19 1 1.9147 -2.0707 9.1423 20 6 2.3951 -3.8262 8.0269 21 7 2.4341 -4.3850 6.8370 22 14 2.9466 -4.7890 9.5296 23 1 1.7861 -5.5145 10.1059 24 1 3.9943 -5.7649 9.1352 25 1 3.4978 -3.8531 10.5423 26 6 2.6682 -1.6349 5.9654 27 1 -0.3633 0.5195 0.8868 28 1 -0.3633 0.5082 -0.8932 29 1 -0.3634 -1.0277 0.0066 30 1 2.3597 -0.0452 -2.0191 31 1 1.3066 -1.4406 -1.6224 32 1 4.1669 -0.8770 -0.6579 33 1 3.4813 -2.4158 -1.2788 34 1 3.6655 -2.0412 1.3933 35 1 2.1806 -2.7721 0.7135 36 1 1.3665 1.0353 4.2405 37 1 2.5153 1.1854 5.5934 38 1 0.2356 1.4160 6.4603 39 1 -0.2486 -0.1097 5.6813 40 1 1.8962 0.1731 7.8354 41 1 0.2441 -0.4333 8.1003 42 1 2.7489 -5.2974 6.7398 43 1 3.5315 -1.2005 6.4693 44 1 2.9261 -2.6233 5.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329662190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:30 Heat of formation + Delta-G solvation = -55.364781 kcal Electronic energy + Delta-G solvation = -25037.205575 eV Core-core repulsion = 21568.911428 eV Total energy + Delta-G solvation = -3468.294147 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69870 -38.88179 -37.44256 -36.70922 -33.30283 -31.95407 -31.60339 -31.39304 -29.71333 -26.20020 -25.76096 -24.98896 -23.53666 -22.02659 -21.64592 -20.70360 -19.31540 -18.43553 -17.08898 -16.78938 -16.29955 -15.86882 -15.29990 -14.99312 -14.55404 -14.11973 -13.85776 -13.71311 -13.62469 -13.37830 -13.20970 -12.83210 -12.68850 -12.58062 -12.34125 -12.05557 -11.87895 -11.66935 -11.47404 -11.17197 -10.97979 -10.94020 -10.90004 -10.64210 -10.42972 -10.25115 -9.97481 -9.81721 -9.17571 -9.10684 -8.74598 -8.47765 -8.36566 -7.79149 -6.01837 -4.09855 1.84970 2.61004 3.30399 3.37534 3.40254 3.67158 3.85232 4.36646 4.42636 4.43565 4.70437 4.74366 5.10000 5.15632 5.25610 5.28935 5.40471 5.54813 5.63745 5.67619 5.71665 5.74516 5.89252 5.91170 5.98255 6.04688 6.11054 6.23623 6.30671 6.41121 6.54250 6.63541 6.74073 6.90011 7.01075 7.09645 7.20276 7.36752 7.60086 7.83394 7.95916 7.99394 8.20199 8.36648 8.62071 8.94295 9.55642 11.03866 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.004367 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.676091 B = 6410.026407 C = 7329.670435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.078 0.922 4 C -0.129 4.129 5 C -0.137 4.137 6 C 0.099 3.901 7 N -0.589 5.589 8 C 0.525 3.475 9 O -0.516 6.516 10 C 0.497 3.503 11 O -0.521 6.521 12 N -0.568 5.568 13 C 0.050 3.950 14 C -0.127 4.127 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.110 3.890 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.047 0.953 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 8.549 -15.505 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 H 0.096 0.904 4 C -0.166 4.166 5 C -0.175 4.175 6 C -0.023 4.023 7 N -0.324 5.324 8 C 0.310 3.690 9 O -0.394 6.394 10 C 0.278 3.722 11 O -0.398 6.398 12 N -0.299 5.299 13 C -0.072 4.072 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.010 4.010 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.160 0.840 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.407 8.355 -15.480 17.595 hybrid contribution 0.260 -0.614 0.951 1.161 sum -0.147 7.741 -14.529 16.463 Atomic orbital electron populations 1.22154 0.94461 1.02564 1.03018 1.21671 0.94882 0.96451 0.84217 0.90376 1.22737 0.98063 0.99619 0.96228 1.22861 0.97812 1.00987 0.95827 1.22616 0.96831 0.87828 0.95037 1.48467 1.51267 1.28376 1.04260 1.20495 0.80705 0.84899 0.82859 1.90281 1.40474 1.27740 1.80954 1.19690 0.82083 0.86323 0.84054 1.90709 1.42545 1.23822 1.82766 1.48427 1.59338 1.17020 1.05156 1.23059 0.96317 0.83762 1.04020 1.21851 0.97778 0.99798 0.97104 1.21664 0.99683 0.98024 0.95700 1.18974 0.93906 0.90840 0.94142 0.95297 1.21102 1.44029 0.97520 0.93078 0.92246 1.25057 0.95420 0.97631 0.95932 1.69879 1.46335 1.14234 1.21636 0.86567 0.78426 0.79850 0.83012 1.20664 1.21167 1.19874 1.22472 0.98162 0.95316 0.85063 0.90980 0.91648 0.92345 0.90040 0.90308 0.90625 0.89643 0.88138 0.90781 0.84036 0.92805 0.92304 0.92381 0.93257 0.93109 0.92655 0.93473 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.11 37.16 0.34 -1.43 16 2 C 0.13 1.44 3.46 -66.94 -0.23 1.21 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.03 6.48 -24.89 -0.16 -1.19 16 5 C -0.14 -1.20 7.09 -24.58 -0.17 -1.37 16 6 C 0.10 1.28 5.97 -2.53 -0.02 1.26 16 7 N -0.59 -8.48 3.06 -163.51 -0.50 -8.98 16 8 C 0.53 9.26 7.60 -11.58 -0.09 9.17 16 9 O -0.52 -9.28 12.15 5.50 0.07 -9.21 16 10 C 0.50 10.36 7.69 -11.58 -0.09 10.27 16 11 O -0.52 -11.85 13.34 5.50 0.07 -11.78 16 12 N -0.57 -12.18 2.98 -173.24 -0.52 -12.70 16 13 C 0.05 0.93 6.26 -3.71 -0.02 0.90 16 14 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 15 C -0.11 -2.38 5.11 -26.69 -0.14 -2.51 16 16 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.56 11.40 55.43 0.63 -24.93 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.11 2.70 5.38 -3.69 -0.02 2.68 16 27 H 0.07 0.94 6.89 -51.93 -0.36 0.59 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.50 6.35 -51.93 -0.33 1.17 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.14 2.56 3.79 -56.74 -0.21 2.35 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.12 3.44 5.19 -51.93 -0.27 3.17 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -30.41 340.22 -8.54 -38.95 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.04 Total: 2.83 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.36 Total: 4.47 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.39 Total: -46.60 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.14 Total: -20.99 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.41 -8.54 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.415 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds