Wall clock time and date at job start Tue Mar 31 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99724 * 2 1 4 4 C 1.54338 * 109.98829 * 238.95628 * 2 1 3 5 5 C 1.55158 * 103.01715 * 218.66644 * 4 2 1 6 6 C 1.54904 * 101.58414 * 35.30788 * 5 4 2 7 7 N 1.47028 * 109.87948 * 121.09259 * 2 1 3 8 8 C 1.34770 * 125.64646 * 298.38574 * 7 2 1 9 9 O 1.21349 * 120.00633 * 359.72708 * 8 7 2 10 10 C 1.49460 * 119.99529 * 179.71905 * 8 7 2 11 11 O 1.21344 * 120.00262 * 353.58507 * 10 8 7 12 12 N 1.34777 * 119.99261 * 173.58197 * 10 8 7 13 13 C 1.46919 * 120.63613 * 352.82279 * 12 10 8 14 14 C 1.53201 * 108.89129 * 126.47061 * 13 12 10 15 15 C 1.53039 * 109.31074 * 54.56851 * 14 13 12 16 16 C 1.53045 * 109.53723 * 298.63086 * 15 14 13 17 17 H 1.08998 * 109.49655 * 301.42315 * 16 15 14 18 18 C 1.50699 * 109.49599 * 181.31929 * 16 15 14 19 19 H 1.08000 * 120.00084 * 0.02562 * 18 16 15 20 20 C 1.37881 * 119.99692 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99787 * 359.97438 * 20 18 16 22 22 Si 1.86791 * 119.99815 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47122 * 89.99695 * 22 20 18 24 24 H 1.48505 * 109.47413 * 209.99607 * 22 20 18 25 25 H 1.48501 * 109.47296 * 330.00138 * 22 20 18 26 26 C 1.46963 * 120.64676 * 172.65340 * 12 10 8 27 27 H 1.09005 * 109.46854 * 300.36418 * 1 2 3 28 28 H 1.08999 * 109.47082 * 60.36187 * 1 2 3 29 29 H 1.09007 * 109.47240 * 180.36737 * 1 2 3 30 30 H 1.08995 * 110.84488 * 100.19942 * 4 2 1 31 31 H 1.08993 * 110.66721 * 337.05077 * 4 2 1 32 32 H 1.08998 * 111.00273 * 277.23044 * 5 4 2 33 33 H 1.09006 * 111.03380 * 153.40099 * 5 4 2 34 34 H 1.08999 * 110.36482 * 204.14722 * 6 5 4 35 35 H 1.09000 * 110.45730 * 81.87533 * 6 5 4 36 36 H 1.08998 * 109.58670 * 6.61475 * 13 12 10 37 37 H 1.08999 * 109.59383 * 246.32824 * 13 12 10 38 38 H 1.08999 * 109.49319 * 174.51934 * 14 13 12 39 39 H 1.08994 * 109.49490 * 294.58317 * 14 13 12 40 40 H 1.08997 * 109.46130 * 58.65465 * 15 14 13 41 41 H 1.08996 * 109.45601 * 178.61495 * 15 14 13 42 42 H 0.97006 * 119.99910 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.46716 * 113.74809 * 26 12 10 44 44 H 1.08994 * 109.71513 * 353.45484 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7480 -1.2427 5 6 3.2863 -1.5185 -0.6913 6 6 2.8099 -1.8825 0.7370 7 7 2.0300 -0.7140 1.1840 8 6 1.8074 -0.3618 2.4657 9 8 1.1472 0.6245 2.7181 10 6 2.3737 -1.1863 3.5763 11 8 2.9337 -2.2341 3.3295 12 7 2.2624 -0.7658 4.8519 13 6 1.7296 0.5691 5.1564 14 6 0.5747 0.4268 6.1528 15 6 1.0571 -0.3519 7.3789 16 6 1.5028 -1.7526 6.9528 17 1 0.6709 -2.2690 6.4738 18 6 1.9471 -2.5295 8.1652 19 1 1.9147 -2.0707 9.1423 20 6 2.3951 -3.8262 8.0269 21 7 2.4341 -4.3850 6.8370 22 14 2.9466 -4.7890 9.5296 23 1 1.7861 -5.5145 10.1059 24 1 3.9943 -5.7649 9.1352 25 1 3.4978 -3.8531 10.5423 26 6 2.6682 -1.6349 5.9654 27 1 -0.3633 0.5195 0.8868 28 1 -0.3633 0.5082 -0.8932 29 1 -0.3634 -1.0277 0.0066 30 1 2.3597 -0.0452 -2.0191 31 1 1.3066 -1.4406 -1.6224 32 1 4.1669 -0.8770 -0.6579 33 1 3.4813 -2.4158 -1.2788 34 1 3.6655 -2.0412 1.3933 35 1 2.1806 -2.7721 0.7135 36 1 1.3665 1.0353 4.2405 37 1 2.5153 1.1854 5.5934 38 1 0.2356 1.4160 6.4603 39 1 -0.2486 -0.1097 5.6813 40 1 1.8962 0.1731 7.8354 41 1 0.2441 -0.4333 8.1003 42 1 2.7489 -5.2974 6.7398 43 1 3.5315 -1.2005 6.4693 44 1 2.9261 -2.6233 5.5851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329662190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:29 Heat of formation + Delta-G solvation = -74.040999 kcal Electronic energy + Delta-G solvation = -25038.015436 eV Core-core repulsion = 21568.911428 eV Total energy + Delta-G solvation = -3469.104009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09802 -40.26480 -38.80450 -38.35627 -35.25949 -33.54280 -32.84896 -32.29767 -31.57481 -27.76283 -27.00183 -26.65802 -24.95849 -23.60432 -22.93740 -21.87954 -20.79003 -19.97602 -18.64264 -18.24794 -17.79165 -17.58277 -16.75757 -16.53015 -16.29571 -15.55540 -15.27841 -15.04998 -14.82244 -14.63687 -14.58403 -14.47595 -14.11389 -13.81475 -13.69106 -13.48298 -13.27665 -12.95434 -12.89150 -12.65018 -12.49487 -12.31526 -12.23984 -12.04899 -11.75122 -11.73148 -11.61611 -11.45196 -11.15516 -10.99035 -10.56335 -10.00329 -9.87106 -9.53448 -8.13800 -6.30572 0.34315 1.26116 1.41521 1.41921 1.52777 2.12443 2.38866 2.45565 3.10976 3.17634 3.58934 3.69008 3.98004 4.12618 4.16202 4.21726 4.31377 4.33513 4.43540 4.55338 4.61841 4.71202 4.76506 4.79184 4.86635 4.89323 4.99269 5.03819 5.06217 5.11267 5.14212 5.21406 5.24041 5.29043 5.35765 5.37035 5.50402 5.55660 5.81825 5.91471 6.07728 6.26404 6.39509 6.67644 6.81187 6.98410 7.39451 8.90565 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.004367 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.676091 B = 6410.026407 C = 7329.670435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.085 0.915 4 C -0.116 4.116 5 C -0.124 4.124 6 C 0.090 3.910 7 N -0.583 5.583 8 C 0.527 3.473 9 O -0.522 6.522 10 C 0.486 3.514 11 O -0.550 6.550 12 N -0.576 5.576 13 C 0.050 3.950 14 C -0.120 4.120 15 C -0.106 4.106 16 C 0.039 3.961 17 H -0.013 1.013 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.961 3.039 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.263 1.263 26 C 0.123 3.877 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.153 0.847 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.262 0.738 43 H 0.043 0.957 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 10.145 -16.900 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.103 0.897 4 C -0.154 4.154 5 C -0.162 4.162 6 C -0.032 4.032 7 N -0.315 5.315 8 C 0.310 3.690 9 O -0.402 6.402 10 C 0.269 3.731 11 O -0.429 6.429 12 N -0.308 5.308 13 C -0.071 4.071 14 C -0.158 4.158 15 C -0.144 4.144 16 C 0.020 3.980 17 H 0.005 0.995 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.555 5.555 22 Si 0.786 3.214 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.187 1.187 26 C 0.002 3.998 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.170 0.830 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.444 9.979 -16.908 19.638 hybrid contribution 0.260 -1.134 1.319 1.759 sum -0.185 8.844 -15.589 17.924 Atomic orbital electron populations 1.22125 0.94189 1.02188 1.03279 1.22069 0.95174 0.96969 0.83867 0.89669 1.22770 0.97542 0.99939 0.95116 1.22845 0.98371 1.02278 0.92699 1.22727 0.95671 0.87349 0.97467 1.48601 1.50282 1.28661 1.03997 1.19720 0.81228 0.84674 0.83339 1.90248 1.41019 1.27789 1.81160 1.20413 0.81508 0.86425 0.84796 1.90687 1.43627 1.25208 1.83418 1.48460 1.59669 1.17786 1.04858 1.23281 0.96782 0.82247 1.04760 1.21816 0.97158 1.01188 0.95607 1.21556 1.00075 0.95698 0.97043 1.18910 0.92608 0.92996 0.93518 0.99470 1.21486 1.43916 0.98195 0.93884 0.91858 1.25894 0.95444 0.98742 0.98706 1.70059 1.47233 1.14343 1.23827 0.85511 0.77976 0.78393 0.79527 1.20099 1.21081 1.18692 1.21937 0.97772 0.94205 0.85891 0.93621 0.88482 0.92983 0.86934 0.89189 0.89879 0.87378 0.90789 0.91556 0.83045 0.91158 0.88336 0.93738 0.92375 0.92740 0.92918 0.93889 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.11 71.98 0.66 -2.48 16 2 C 0.12 2.38 3.46 45.35 0.16 2.54 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -1.41 6.48 31.79 0.21 -1.20 16 5 C -0.12 -1.84 7.09 31.99 0.23 -1.61 16 6 C 0.09 2.31 5.97 86.85 0.52 2.83 16 7 N -0.58 -16.51 3.06 -789.58 -2.42 -18.93 16 8 C 0.53 18.79 7.60 87.27 0.66 19.45 16 9 O -0.52 -18.59 12.15 -3.24 -0.04 -18.63 16 10 C 0.49 21.12 7.69 87.27 0.67 21.79 16 11 O -0.55 -26.62 13.34 -3.23 -0.04 -26.66 16 12 N -0.58 -25.53 2.98 -820.38 -2.44 -27.97 16 13 C 0.05 1.80 6.26 86.37 0.54 2.34 16 14 C -0.12 -4.26 6.08 30.67 0.19 -4.08 16 15 C -0.11 -4.44 5.11 30.62 0.16 -4.28 16 16 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 17 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 18 C -0.54 -30.02 8.56 25.60 0.22 -29.80 16 19 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 20 C 0.01 0.65 5.30 84.66 0.45 1.10 16 21 N -0.92 -55.34 11.40 21.45 0.24 -55.09 16 22 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.12 6.38 5.38 86.36 0.46 6.84 16 27 H 0.04 1.15 6.89 -2.38 -0.02 1.13 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.95 7.85 -2.39 -0.02 0.93 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 2.31 6.35 -2.39 -0.02 2.29 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.15 5.34 3.79 -78.60 -0.30 5.04 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 43 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.08 5.05 5.19 -2.39 -0.01 5.04 16 Total: -1.00 -69.93 340.22 3.11 -66.82 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.70 Total: 18.73 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.09 Total: 15.45 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -4.62 Total: -102.00 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.08 Total: -45.29 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -69.93 3.11 -66.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329662190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.216 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds