Wall clock time and date at job start Tue Mar 31 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47316 * 2 1 4 4 C 1.50701 * 109.47181 * 240.00007 * 2 1 3 5 5 O 1.21284 * 120.00025 * 334.54040 * 4 2 1 6 6 N 1.34773 * 120.00264 * 154.53301 * 4 2 1 7 7 C 1.46923 * 120.62941 * 5.25702 * 6 4 2 8 8 C 1.53626 * 108.54747 * 126.36817 * 7 6 4 9 9 C 1.53038 * 109.24179 * 54.85382 * 8 7 6 10 10 C 1.50702 * 109.45902 * 178.49236 * 9 8 7 11 11 H 1.08004 * 119.99778 * 120.06863 * 10 9 8 12 12 C 1.37871 * 120.00296 * 300.07307 * 10 9 8 13 13 N 1.31514 * 119.99861 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00088 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47456 * 59.99738 * 14 12 10 16 16 H 1.48503 * 109.47171 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47217 * 299.99562 * 14 12 10 18 18 C 1.53039 * 109.53714 * 298.51633 * 9 8 7 19 19 C 1.46923 * 120.63330 * 185.53397 * 6 4 2 20 20 C 1.53004 * 109.47099 * 120.00544 * 2 1 3 21 21 H 1.09001 * 110.21228 * 180.47552 * 20 2 1 22 22 C 1.54478 * 110.24349 * 302.49653 * 20 2 1 23 23 C 1.54622 * 101.76478 * 144.41751 * 22 20 2 24 24 C 1.51277 * 104.19660 * 335.20202 * 23 22 20 25 25 O 1.21288 * 124.94170 * 196.27814 * 24 23 22 26 26 N 1.34424 * 110.11586 * 16.24945 * 24 23 22 27 27 H 1.09000 * 109.47578 * 296.34653 * 1 2 3 28 28 H 1.08999 * 109.47268 * 176.34781 * 1 2 3 29 29 H 1.09005 * 109.47450 * 56.35032 * 1 2 3 30 30 H 1.09007 * 109.58808 * 246.19995 * 7 6 4 31 31 H 1.09007 * 109.58837 * 6.62517 * 7 6 4 32 32 H 1.09002 * 109.62921 * 294.86240 * 8 7 6 33 33 H 1.08998 * 109.46118 * 174.74263 * 8 7 6 34 34 H 1.09000 * 109.44700 * 58.52890 * 9 8 7 35 35 H 0.97003 * 120.00315 * 180.02562 * 13 12 10 36 36 H 1.09005 * 109.49791 * 301.40787 * 18 9 8 37 37 H 1.09006 * 109.52020 * 181.33417 * 18 9 8 38 38 H 1.09003 * 109.58786 * 353.37550 * 19 6 4 39 39 H 1.08998 * 109.58665 * 113.65751 * 19 6 4 40 40 H 1.09008 * 110.96802 * 262.53714 * 22 20 2 41 41 H 1.09002 * 110.96803 * 26.29250 * 22 20 2 42 42 H 1.09004 * 110.48602 * 216.52103 * 23 22 20 43 43 H 1.09006 * 110.48822 * 93.88354 * 23 22 20 44 44 H 0.97001 * 124.34784 * 180.38459 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3403 -1.5454 -1.7736 6 7 3.2504 -0.4178 -1.7275 7 6 4.1463 0.5055 -1.0179 8 6 5.4984 -0.1923 -0.8053 9 6 6.0346 -0.6750 -2.1549 10 6 7.3785 -1.3276 -1.9568 11 1 7.5230 -2.3613 -2.2348 12 6 8.4233 -0.6054 -1.4208 13 7 8.2474 0.6534 -1.0827 14 14 10.0892 -1.4142 -1.1759 15 1 10.6104 -1.8806 -2.4859 16 1 11.0352 -0.4313 -0.5890 17 1 9.9467 -2.5733 -0.2587 18 6 5.0600 -1.6879 -2.7602 19 6 3.7053 -1.0114 -2.9921 20 6 2.0400 -0.7214 1.2492 21 1 3.1298 -0.7211 1.2657 22 6 1.4840 -0.0446 2.5217 23 6 1.2709 -1.2577 3.4565 24 6 1.0985 -2.4274 2.5129 25 8 0.6361 -3.5057 2.8204 26 7 1.5318 -2.0977 1.2838 27 1 -0.3634 0.4561 0.9209 28 1 -0.3634 -1.0256 -0.0655 29 1 -0.3634 0.5695 -0.8555 30 1 4.2873 1.4077 -1.6132 31 1 3.7124 0.7663 -0.0526 32 1 5.3695 -1.0452 -0.1389 33 1 6.2045 0.5109 -0.3637 34 1 6.1396 0.1753 -2.8288 35 1 8.9827 1.1617 -0.7059 36 1 4.9353 -2.5268 -2.0754 37 1 5.4537 -2.0493 -3.7103 38 1 2.9802 -1.7519 -3.3300 39 1 3.8086 -0.2308 -3.7458 40 1 2.2107 0.6499 2.9433 41 1 0.5398 0.4591 2.3147 42 1 0.3747 -1.1203 4.0615 43 1 2.1430 -1.4065 4.0933 44 1 1.5115 -2.6932 0.5184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329965694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:50 Heat of formation + Delta-G solvation = -85.089928 kcal Electronic energy + Delta-G solvation = -25061.272031 eV Core-core repulsion = 21591.688905 eV Total energy + Delta-G solvation = -3469.583126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94799 -39.50679 -37.18661 -36.58681 -33.64764 -32.91471 -31.40754 -31.16524 -30.12639 -27.12184 -26.48324 -24.58512 -22.91082 -22.34064 -21.12706 -20.64775 -19.68434 -18.29263 -17.36439 -16.91774 -16.77618 -16.24053 -15.50450 -15.12925 -14.63580 -14.53090 -14.16918 -13.87107 -13.70781 -13.37539 -13.16350 -12.85316 -12.78435 -12.77434 -12.46875 -12.21249 -12.01065 -11.74957 -11.55296 -11.39454 -11.20628 -10.97848 -10.95145 -10.72998 -10.48141 -10.18581 -9.88795 -9.76212 -9.43855 -9.25416 -9.14638 -9.00290 -8.45253 -8.11300 -6.10411 -4.16403 2.57465 2.78853 3.25486 3.28100 3.30304 3.33849 3.36565 4.15392 4.25515 4.35408 4.45914 4.70272 4.84668 4.90613 5.02428 5.15529 5.20783 5.38112 5.43762 5.49924 5.56308 5.68462 5.73517 5.77624 5.84291 5.91092 5.97967 6.06448 6.14252 6.17317 6.35560 6.55978 6.75376 6.80963 6.94005 7.02926 7.04218 7.16991 7.57965 7.80192 7.82775 7.95147 8.23837 8.32410 8.41488 8.86663 9.49208 10.95100 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.004509 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.828567 B = 6208.386860 C = 6877.983550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 H 0.107 0.893 4 C 0.512 3.488 5 O -0.554 6.554 6 N -0.597 5.597 7 C 0.099 3.901 8 C -0.123 4.123 9 C 0.049 3.951 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.123 4.123 19 C 0.110 3.890 20 C 0.138 3.862 21 H 0.094 0.906 22 C -0.132 4.132 23 C -0.156 4.156 24 C 0.519 3.481 25 O -0.542 6.542 26 N -0.718 5.718 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 4.896 5.679 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 H 0.125 0.875 4 C 0.299 3.701 5 O -0.433 6.433 6 N -0.329 5.329 7 C -0.023 4.023 8 C -0.161 4.161 9 C 0.031 3.969 10 C -0.551 4.551 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.161 4.161 19 C -0.012 4.012 20 C 0.031 3.969 21 H 0.112 0.888 22 C -0.170 4.170 23 C -0.196 4.196 24 C 0.305 3.695 25 O -0.419 6.419 26 N -0.374 5.374 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -12.535 4.124 5.712 14.379 hybrid contribution 1.235 -0.475 -0.289 1.355 sum -11.300 3.649 5.422 13.054 Atomic orbital electron populations 1.21700 0.92252 1.03577 1.01744 1.21665 0.98601 1.00968 0.93083 0.87458 1.20432 0.81309 0.82924 0.85445 1.90654 1.56917 1.34061 1.61683 1.48287 1.15000 1.45644 1.23968 1.22228 0.92307 0.92392 0.95394 1.22103 0.92653 1.00297 1.01076 1.18623 0.92298 0.93713 0.92298 1.21162 0.94878 0.97717 1.41347 0.92780 1.24935 0.98705 0.94822 0.95359 1.69811 1.32081 1.07915 1.43335 0.86682 0.83805 0.79156 0.78521 1.20288 1.21263 1.20327 1.22002 0.93692 0.99533 1.00883 1.21717 0.97407 0.97621 0.84429 1.21693 0.99280 0.81631 0.94251 0.88843 1.22844 1.03252 0.97378 0.93538 1.22350 1.05147 0.93681 0.98397 1.20859 0.76217 0.88683 0.83749 1.90747 1.45849 1.25795 1.79519 1.46362 1.63300 1.15351 1.12381 0.91648 0.91246 0.92220 0.91764 0.91350 0.94258 0.87657 0.95443 0.92886 0.92990 0.92150 0.90355 0.92145 0.88630 0.89033 0.88066 0.87658 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.38 37.15 0.31 -1.09 16 2 C -0.12 -1.34 1.81 -91.77 -0.17 -1.50 16 3 H 0.11 0.98 6.74 -51.93 -0.35 0.63 16 4 C 0.51 7.78 6.24 -10.99 -0.07 7.72 16 5 O -0.55 -10.04 14.97 5.55 0.08 -9.96 16 6 N -0.60 -9.58 2.97 -172.50 -0.51 -10.09 16 7 C 0.10 1.54 6.01 -3.49 -0.02 1.52 16 8 C -0.12 -2.47 5.17 -26.39 -0.14 -2.61 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.51 -13.20 8.56 -34.44 -0.29 -13.49 16 11 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 12 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 13 N -0.89 -23.44 11.31 55.43 0.63 -22.82 16 14 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 19 C 0.11 1.89 6.44 -3.71 -0.02 1.87 16 20 C 0.14 1.45 3.00 -67.01 -0.20 1.25 16 21 H 0.09 1.06 7.17 -51.93 -0.37 0.69 16 22 C -0.13 -0.97 6.51 -25.10 -0.16 -1.14 16 23 C -0.16 -1.38 6.86 -26.75 -0.18 -1.56 16 24 C 0.52 7.05 8.43 -10.86 -0.09 6.96 16 25 O -0.54 -9.68 18.03 5.55 0.10 -9.58 16 26 N -0.72 -9.37 5.03 -52.76 -0.27 -9.63 16 27 H 0.06 0.51 5.85 -51.93 -0.30 0.21 16 28 H 0.07 0.87 7.31 -51.93 -0.38 0.49 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.07 0.84 4.82 -51.93 -0.25 0.59 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 2.38 6.03 -51.93 -0.31 2.07 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 6.62 8.31 -40.82 -0.34 6.29 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.36 7.00 -51.93 -0.36 0.99 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.09 0.57 5.61 -51.93 -0.29 0.28 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.42 6.18 8.06 -40.82 -0.33 5.85 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -30.47 339.31 -8.06 -38.53 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.72 Total: 5.28 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.46 Total: -2.17 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.15 Total: -42.54 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.47 -8.06 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.555 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds