Wall clock time and date at job start Tue Mar 31 2020 07:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47316 * 2 1 4 4 C 1.50701 * 109.47181 * 240.00007 * 2 1 3 5 5 O 1.21284 * 120.00025 * 334.54040 * 4 2 1 6 6 N 1.34773 * 120.00264 * 154.53301 * 4 2 1 7 7 C 1.46923 * 120.62941 * 5.25702 * 6 4 2 8 8 C 1.53626 * 108.54747 * 126.36817 * 7 6 4 9 9 C 1.53038 * 109.24179 * 54.85382 * 8 7 6 10 10 C 1.50702 * 109.45902 * 178.49236 * 9 8 7 11 11 H 1.08004 * 119.99778 * 120.06863 * 10 9 8 12 12 C 1.37871 * 120.00296 * 300.07307 * 10 9 8 13 13 N 1.31514 * 119.99861 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00088 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47456 * 59.99738 * 14 12 10 16 16 H 1.48503 * 109.47171 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47217 * 299.99562 * 14 12 10 18 18 C 1.53039 * 109.53714 * 298.51633 * 9 8 7 19 19 C 1.46923 * 120.63330 * 185.53397 * 6 4 2 20 20 C 1.53004 * 109.47099 * 120.00544 * 2 1 3 21 21 H 1.09001 * 110.21228 * 180.47552 * 20 2 1 22 22 C 1.54478 * 110.24349 * 302.49653 * 20 2 1 23 23 C 1.54622 * 101.76478 * 144.41751 * 22 20 2 24 24 C 1.51277 * 104.19660 * 335.20202 * 23 22 20 25 25 O 1.21288 * 124.94170 * 196.27814 * 24 23 22 26 26 N 1.34424 * 110.11586 * 16.24945 * 24 23 22 27 27 H 1.09000 * 109.47578 * 296.34653 * 1 2 3 28 28 H 1.08999 * 109.47268 * 176.34781 * 1 2 3 29 29 H 1.09005 * 109.47450 * 56.35032 * 1 2 3 30 30 H 1.09007 * 109.58808 * 246.19995 * 7 6 4 31 31 H 1.09007 * 109.58837 * 6.62517 * 7 6 4 32 32 H 1.09002 * 109.62921 * 294.86240 * 8 7 6 33 33 H 1.08998 * 109.46118 * 174.74263 * 8 7 6 34 34 H 1.09000 * 109.44700 * 58.52890 * 9 8 7 35 35 H 0.97003 * 120.00315 * 180.02562 * 13 12 10 36 36 H 1.09005 * 109.49791 * 301.40787 * 18 9 8 37 37 H 1.09006 * 109.52020 * 181.33417 * 18 9 8 38 38 H 1.09003 * 109.58786 * 353.37550 * 19 6 4 39 39 H 1.08998 * 109.58665 * 113.65751 * 19 6 4 40 40 H 1.09008 * 110.96802 * 262.53714 * 22 20 2 41 41 H 1.09002 * 110.96803 * 26.29250 * 22 20 2 42 42 H 1.09004 * 110.48602 * 216.52103 * 23 22 20 43 43 H 1.09006 * 110.48822 * 93.88354 * 23 22 20 44 44 H 0.97001 * 124.34784 * 180.38459 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3403 -1.5454 -1.7736 6 7 3.2504 -0.4178 -1.7275 7 6 4.1463 0.5055 -1.0179 8 6 5.4984 -0.1923 -0.8053 9 6 6.0346 -0.6750 -2.1549 10 6 7.3785 -1.3276 -1.9568 11 1 7.5230 -2.3613 -2.2348 12 6 8.4233 -0.6054 -1.4208 13 7 8.2474 0.6534 -1.0827 14 14 10.0892 -1.4142 -1.1759 15 1 10.6104 -1.8806 -2.4859 16 1 11.0352 -0.4313 -0.5890 17 1 9.9467 -2.5733 -0.2587 18 6 5.0600 -1.6879 -2.7602 19 6 3.7053 -1.0114 -2.9921 20 6 2.0400 -0.7214 1.2492 21 1 3.1298 -0.7211 1.2657 22 6 1.4840 -0.0446 2.5217 23 6 1.2709 -1.2577 3.4565 24 6 1.0985 -2.4274 2.5129 25 8 0.6361 -3.5057 2.8204 26 7 1.5318 -2.0977 1.2838 27 1 -0.3634 0.4561 0.9209 28 1 -0.3634 -1.0256 -0.0655 29 1 -0.3634 0.5695 -0.8555 30 1 4.2873 1.4077 -1.6132 31 1 3.7124 0.7663 -0.0526 32 1 5.3695 -1.0452 -0.1389 33 1 6.2045 0.5109 -0.3637 34 1 6.1396 0.1753 -2.8288 35 1 8.9827 1.1617 -0.7059 36 1 4.9353 -2.5268 -2.0754 37 1 5.4537 -2.0493 -3.7103 38 1 2.9802 -1.7519 -3.3300 39 1 3.8086 -0.2308 -3.7458 40 1 2.2107 0.6499 2.9433 41 1 0.5398 0.4591 2.3147 42 1 0.3747 -1.1203 4.0615 43 1 2.1430 -1.4065 4.0933 44 1 1.5115 -2.6932 0.5184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329965694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:49 Heat of formation + Delta-G solvation = -105.131893 kcal Electronic energy + Delta-G solvation = -25062.141116 eV Core-core repulsion = 21591.688905 eV Total energy + Delta-G solvation = -3470.452211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97263 -40.69922 -38.56315 -37.76855 -35.33837 -34.02713 -32.79756 -32.17692 -31.60664 -28.16821 -27.93247 -25.80769 -24.36164 -23.71752 -22.13838 -21.60555 -21.09419 -19.57228 -18.68711 -18.14978 -17.91363 -17.62963 -16.78326 -16.47789 -16.25275 -15.64737 -15.24777 -15.08275 -14.82838 -14.65890 -14.40349 -14.36834 -14.28222 -13.79820 -13.47705 -13.35768 -13.07282 -12.96733 -12.81203 -12.78096 -12.50471 -12.45751 -12.15817 -12.10457 -11.90204 -11.64824 -11.47340 -11.00991 -10.94825 -10.91293 -10.58790 -10.37330 -10.14363 -9.52560 -8.07860 -6.20073 1.41838 1.43570 1.49933 1.52402 1.63736 2.08491 2.37977 2.44089 3.18886 3.28048 3.48688 3.62018 3.85021 3.98895 4.09925 4.22451 4.24459 4.31463 4.37051 4.42727 4.52019 4.56949 4.67940 4.77033 4.82151 4.87087 4.89465 4.94676 5.00630 5.16827 5.18067 5.21770 5.27133 5.40853 5.43938 5.56171 5.65973 5.75923 6.00410 6.03682 6.16281 6.40808 6.54267 6.88056 7.15885 7.20939 7.47332 8.95137 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.004509 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.828567 B = 6208.386860 C = 6877.983550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.141 0.859 4 C 0.508 3.492 5 O -0.587 6.587 6 N -0.602 5.602 7 C 0.110 3.890 8 C -0.113 4.113 9 C 0.046 3.954 10 C -0.538 4.538 11 H 0.041 0.959 12 C 0.024 3.976 13 N -0.907 5.907 14 Si 0.942 3.058 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.278 1.278 18 C -0.113 4.113 19 C 0.116 3.884 20 C 0.131 3.869 21 H 0.088 0.912 22 C -0.117 4.117 23 C -0.146 4.146 24 C 0.506 3.494 25 O -0.597 6.597 26 N -0.724 5.724 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.026 0.974 33 H 0.083 0.917 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 7.162 7.220 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.158 0.842 4 C 0.297 3.703 5 O -0.467 6.467 6 N -0.333 5.333 7 C -0.012 4.012 8 C -0.152 4.152 9 C 0.027 3.973 10 C -0.576 4.576 11 H 0.059 0.941 12 C -0.175 4.175 13 N -0.546 5.546 14 Si 0.769 3.231 15 H -0.203 1.203 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.151 4.151 19 C -0.007 4.007 20 C 0.026 3.974 21 H 0.106 0.894 22 C -0.154 4.154 23 C -0.186 4.186 24 C 0.295 3.705 25 O -0.479 6.479 26 N -0.376 5.376 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.173 6.434 7.254 16.357 hybrid contribution 1.468 -1.240 -0.847 2.100 sum -11.705 5.194 6.407 14.319 Atomic orbital electron populations 1.21700 0.91507 1.02137 1.03542 1.21754 0.99094 1.01905 0.90728 0.84171 1.21247 0.80472 0.82364 0.86188 1.90645 1.57686 1.35515 1.62903 1.48334 1.15610 1.45784 1.23587 1.22133 0.89919 0.91533 0.97576 1.21846 0.94887 0.99513 0.98931 1.18601 0.91940 0.93298 0.93424 1.21495 0.96917 0.97453 1.41733 0.94076 1.25515 1.01346 0.95402 0.95254 1.69901 1.32752 1.08488 1.43449 0.85865 0.80617 0.78398 0.78235 1.20319 1.20525 1.20367 1.21840 0.94699 0.98492 1.00111 1.21543 0.95612 0.97832 0.85693 1.21938 0.99115 0.80553 0.95808 0.89395 1.22938 1.04923 0.96799 0.90779 1.22406 1.06613 0.91785 0.97801 1.21791 0.74984 0.89224 0.84539 1.90706 1.48326 1.28374 1.80477 1.46611 1.62762 1.16356 1.11895 0.88305 0.94100 0.92205 0.91116 0.87205 0.95491 0.89871 0.97678 0.92794 0.94508 0.92391 0.90646 0.91041 0.85442 0.87096 0.86206 0.86341 0.76260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.38 71.98 0.60 -1.72 16 2 C -0.11 -2.12 1.81 -11.54 -0.02 -2.14 16 3 H 0.14 1.77 6.74 -2.39 -0.02 1.76 16 4 C 0.51 14.68 6.24 87.66 0.55 15.23 16 5 O -0.59 -21.15 14.97 -3.04 -0.05 -21.20 16 6 N -0.60 -18.46 2.97 -818.05 -2.43 -20.88 16 7 C 0.11 3.17 6.01 86.51 0.52 3.69 16 8 C -0.11 -4.52 5.17 30.82 0.16 -4.36 16 9 C 0.05 2.10 2.06 -11.51 -0.02 2.08 16 10 C -0.54 -28.26 8.56 25.60 0.22 -28.04 16 11 H 0.04 2.20 7.74 -2.91 -0.02 2.18 16 12 C 0.02 1.27 5.30 84.65 0.45 1.72 16 13 N -0.91 -47.63 11.31 21.45 0.24 -47.39 16 14 Si 0.94 41.81 29.54 68.60 2.03 43.84 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 C -0.11 -4.53 5.30 30.67 0.16 -4.36 16 19 C 0.12 3.95 6.44 86.36 0.56 4.51 16 20 C 0.13 2.37 3.00 45.45 0.14 2.50 16 21 H 0.09 1.73 7.17 -2.39 -0.02 1.71 16 22 C -0.12 -1.13 6.51 31.65 0.21 -0.93 16 23 C -0.15 -2.10 6.86 30.58 0.21 -1.89 16 24 C 0.51 13.37 8.43 87.90 0.74 14.11 16 25 O -0.60 -21.83 18.03 -3.05 -0.06 -21.88 16 26 N -0.72 -18.36 5.03 -439.43 -2.21 -20.58 16 27 H 0.10 1.07 5.85 -2.39 -0.01 1.06 16 28 H 0.04 0.97 7.31 -2.39 -0.02 0.95 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.11 2.25 4.82 -2.38 -0.01 2.24 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 3.73 6.03 -2.39 -0.01 3.72 16 34 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 36 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.08 2.63 7.00 -2.39 -0.02 2.61 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.11 0.69 5.61 -2.39 -0.01 0.68 16 42 H 0.12 1.33 8.14 -2.38 -0.02 1.32 16 43 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.40 12.23 8.06 -92.71 -0.75 11.49 16 Total: -1.00 -69.88 339.31 2.26 -67.62 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.27 Total: 20.07 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 4.47 Total: 0.40 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -4.40 Total: -88.85 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.10 Total: -43.08 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -69.88 2.26 -67.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.511 kcal (2) G-P(sol) polarization free energy of solvation -69.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds