Wall clock time and date at job start Tue Mar 31 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47300 * 2 1 4 4 C 1.50700 * 109.47393 * 239.99728 * 2 1 3 5 5 O 1.21281 * 119.99818 * 262.53164 * 4 2 1 6 6 N 1.34774 * 119.99819 * 82.52998 * 4 2 1 7 7 C 1.46921 * 120.63148 * 4.86719 * 6 4 2 8 8 C 1.52767 * 109.00987 * 233.58591 * 7 6 4 9 9 C 1.53042 * 109.38074 * 305.58886 * 8 7 6 10 10 C 1.50697 * 109.45084 * 181.25326 * 9 8 7 11 11 H 1.07998 * 120.00202 * 245.32042 * 10 9 8 12 12 C 1.37872 * 120.00047 * 65.31342 * 10 9 8 13 13 N 1.31513 * 120.00033 * 7.14188 * 12 10 9 14 14 Si 1.86808 * 120.00242 * 187.14251 * 12 10 9 15 15 H 1.48495 * 109.47143 * 94.98630 * 14 12 10 16 16 H 1.48499 * 109.46809 * 214.98658 * 14 12 10 17 17 H 1.48500 * 109.46883 * 334.98358 * 14 12 10 18 18 C 1.53043 * 109.53936 * 61.23828 * 9 8 7 19 19 C 1.46928 * 120.62922 * 185.14743 * 6 4 2 20 20 C 1.53007 * 109.47010 * 119.99872 * 2 1 3 21 21 H 1.08999 * 110.21399 * 60.70052 * 20 2 1 22 22 C 1.54485 * 110.24531 * 298.77014 * 20 2 1 23 23 C 1.54855 * 101.65968 * 266.39203 * 22 20 2 24 24 C 1.51279 * 104.21256 * 335.18959 * 23 22 20 25 25 O 1.21277 * 124.94530 * 196.24598 * 24 23 22 26 26 N 1.34427 * 110.11164 * 16.26912 * 24 23 22 27 27 H 1.09003 * 109.46757 * 58.88448 * 1 2 3 28 28 H 1.08998 * 109.47424 * 298.88831 * 1 2 3 29 29 H 1.09000 * 109.46992 * 178.88408 * 1 2 3 30 30 H 1.09004 * 109.58853 * 353.41702 * 7 6 4 31 31 H 1.08996 * 109.59118 * 113.84835 * 7 6 4 32 32 H 1.08997 * 109.56445 * 185.55308 * 8 7 6 33 33 H 1.09005 * 109.35791 * 65.49725 * 8 7 6 34 34 H 1.08999 * 109.46198 * 301.21761 * 9 8 7 35 35 H 0.97006 * 120.00098 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.49984 * 178.68398 * 18 9 8 37 37 H 1.08996 * 109.49379 * 58.58654 * 18 9 8 38 38 H 1.08998 * 109.58766 * 246.15667 * 19 6 4 39 39 H 1.09004 * 109.58407 * 6.44020 * 19 6 4 40 40 H 1.09003 * 110.96721 * 24.53562 * 22 20 2 41 41 H 1.08995 * 110.96872 * 148.29400 * 22 20 2 42 42 H 1.08998 * 110.46356 * 216.51468 * 23 22 20 43 43 H 1.08997 * 110.60543 * 93.93547 * 23 22 20 44 44 H 0.96996 * 124.34646 * 180.42376 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3632 -1.8754 -1.1653 6 7 2.1139 -0.0512 -2.4031 7 6 1.8187 1.3862 -2.4759 8 6 0.7638 1.6234 -3.5552 9 6 1.2407 1.0117 -4.8745 10 6 0.2152 1.2716 -5.9477 11 1 -0.3200 0.4467 -6.3944 12 6 -0.0399 2.5625 -6.3593 13 7 0.7063 3.5524 -5.9200 14 14 -1.4455 2.9056 -7.5410 15 1 -2.6566 3.2884 -6.7718 16 1 -1.0664 4.0153 -8.4521 17 1 -1.7306 1.6858 -8.3385 18 6 1.4262 -0.4975 -4.7014 19 6 2.4939 -0.7576 -3.6341 20 6 2.0400 -0.7213 1.2493 21 1 1.6936 -1.7547 1.2553 22 6 1.5604 0.0108 2.5224 23 6 2.7590 0.9465 2.8156 24 6 3.9375 0.2551 2.1662 25 8 5.1019 0.5053 2.3946 26 7 3.5061 -0.6767 1.2985 27 1 -0.3633 0.5311 -0.8799 28 1 -0.3634 0.4964 0.8997 29 1 -0.3633 -1.0275 -0.0200 30 1 1.4389 1.7304 -1.5139 31 1 2.7265 1.9334 -2.7297 32 1 0.6095 2.6945 -3.6855 33 1 -0.1729 1.1543 -3.2542 34 1 2.1899 1.4636 -5.1622 35 1 0.5270 4.4606 -6.2099 36 1 1.7433 -0.9360 -5.6476 37 1 0.4832 -0.9466 -4.3897 38 1 3.4580 -0.3889 -3.9842 39 1 2.5621 -1.8272 -3.4354 40 1 0.6551 0.5847 2.3247 41 1 1.4041 -0.6919 3.3408 42 1 2.9160 1.0393 3.8902 43 1 2.5983 1.9273 2.3683 44 1 4.0889 -1.2465 0.7728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329965696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:52 Heat of formation + Delta-G solvation = -88.234283 kcal Electronic energy + Delta-G solvation = -24824.627257 eV Core-core repulsion = 21354.907781 eV Total energy + Delta-G solvation = -3469.719476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94250 -39.54656 -37.25664 -36.50085 -33.73631 -33.05831 -31.45630 -31.06723 -30.18855 -26.95812 -26.42152 -24.69013 -22.97147 -22.45489 -21.11626 -20.60183 -19.73195 -18.27267 -17.76764 -16.98023 -16.44169 -16.21361 -15.41933 -15.19016 -14.78126 -14.57019 -14.01260 -13.88862 -13.66970 -13.31291 -13.21144 -13.08154 -12.88695 -12.71997 -12.58196 -12.03581 -11.90699 -11.83129 -11.59012 -11.48209 -11.35991 -11.00290 -10.96869 -10.70756 -10.47154 -10.24992 -9.95671 -9.76498 -9.47645 -9.19626 -9.17512 -9.02138 -8.42954 -8.11920 -6.11183 -4.14169 2.50277 2.83110 3.23754 3.28192 3.30819 3.32067 3.35134 4.13696 4.24603 4.36506 4.41998 4.67671 4.77669 4.98726 5.05791 5.12060 5.20911 5.36104 5.41239 5.50245 5.51894 5.64462 5.71255 5.74374 5.83229 5.87891 5.97149 6.06303 6.09013 6.17545 6.36439 6.54732 6.71542 6.79189 6.94305 6.98383 7.00751 7.11190 7.57552 7.81158 7.81766 7.89871 8.17064 8.32860 8.41814 8.89843 9.50610 10.97161 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.003719 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.244188 B = 7527.000972 C = 7726.646344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.097 0.903 4 C 0.519 3.481 5 O -0.561 6.561 6 N -0.596 5.596 7 C 0.100 3.900 8 C -0.118 4.118 9 C 0.047 3.953 10 C -0.515 4.515 11 H 0.055 0.945 12 C 0.064 3.936 13 N -0.890 5.890 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.122 4.122 19 C 0.111 3.889 20 C 0.148 3.852 21 H 0.100 0.900 22 C -0.131 4.131 23 C -0.158 4.158 24 C 0.516 3.484 25 O -0.541 6.541 26 N -0.720 5.720 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -4.601 15.321 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 H 0.115 0.885 4 C 0.307 3.693 5 O -0.441 6.441 6 N -0.327 5.327 7 C -0.022 4.022 8 C -0.156 4.156 9 C 0.028 3.972 10 C -0.553 4.553 11 H 0.073 0.927 12 C -0.137 4.137 13 N -0.528 5.528 14 Si 0.715 3.285 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.160 4.160 19 C -0.011 4.011 20 C 0.042 3.958 21 H 0.118 0.882 22 C -0.169 4.169 23 C -0.198 4.198 24 C 0.303 3.697 25 O -0.418 6.418 26 N -0.374 5.374 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.426 -4.801 15.499 16.231 hybrid contribution -0.623 0.210 -1.136 1.312 sum -1.049 -4.591 14.364 15.116 Atomic orbital electron populations 1.21810 0.91544 1.03368 1.03475 1.21790 0.98489 1.01235 0.93302 0.88494 1.20349 0.77734 0.86804 0.84457 1.90629 1.50920 1.17067 1.85471 1.48203 1.66298 1.10502 1.07678 1.22001 1.00444 0.79165 1.00559 1.21876 0.95260 1.03683 0.94801 1.18645 0.97485 0.88658 0.92366 1.21167 1.21679 0.92343 1.20124 0.92695 1.24951 0.96163 0.96444 0.96189 1.69930 1.37913 0.99822 1.45141 0.86651 0.82794 0.78011 0.81004 1.20725 1.21271 1.19911 1.22002 0.96894 1.00838 0.96304 1.21726 0.98311 0.96992 0.84097 1.21484 0.79896 1.01068 0.93325 0.88245 1.22813 0.98523 0.98749 0.96816 1.22398 0.93888 1.00416 1.03122 1.20953 0.89833 0.79645 0.79318 1.90749 1.19769 1.66355 1.64973 1.46342 1.08172 1.39125 1.43788 0.90838 0.90961 0.91653 0.91260 0.91827 0.89349 0.93970 0.94824 0.92964 0.92001 0.93041 0.92197 0.90370 0.88370 0.89539 0.88061 0.87677 0.74679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.82 37.16 0.33 -1.04 16 2 C -0.13 -1.40 1.65 -91.77 -0.15 -1.55 16 3 H 0.10 1.04 6.41 -51.93 -0.33 0.71 16 4 C 0.52 7.95 6.54 -10.99 -0.07 7.88 16 5 O -0.56 -9.86 15.23 5.56 0.08 -9.78 16 6 N -0.60 -9.87 2.98 -173.03 -0.52 -10.38 16 7 C 0.10 1.65 6.03 -3.93 -0.02 1.63 16 8 C -0.12 -2.39 5.19 -26.83 -0.14 -2.53 16 9 C 0.05 1.07 1.93 -91.73 -0.18 0.89 16 10 C -0.52 -13.30 8.49 -34.44 -0.29 -13.59 16 11 H 0.05 1.43 7.76 -52.49 -0.41 1.02 16 12 C 0.06 1.68 5.23 -17.82 -0.09 1.59 16 13 N -0.89 -23.99 12.03 55.43 0.67 -23.33 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 19 C 0.11 1.94 6.42 -3.71 -0.02 1.92 16 20 C 0.15 1.44 2.57 -67.01 -0.17 1.27 16 21 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 22 C -0.13 -0.87 6.54 -24.97 -0.16 -1.03 16 23 C -0.16 -1.29 6.86 -26.62 -0.18 -1.48 16 24 C 0.52 6.55 8.43 -10.86 -0.09 6.46 16 25 O -0.54 -9.22 18.03 5.56 0.10 -9.12 16 26 N -0.72 -8.52 5.47 -52.76 -0.29 -8.81 16 27 H 0.07 0.82 7.58 -51.93 -0.39 0.42 16 28 H 0.07 0.47 6.14 -51.93 -0.32 0.16 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.94 5.08 -51.93 -0.26 0.68 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 2.01 6.77 -51.93 -0.35 1.66 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.36 7.04 -51.93 -0.37 1.00 16 40 H 0.10 0.48 5.88 -51.93 -0.31 0.18 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.41 5.35 8.78 -40.82 -0.36 4.99 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -30.83 343.61 -8.06 -38.89 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.87 Total: 4.15 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.40 Total: -2.12 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.14 Total: -42.52 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.83 -8.06 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.349 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds