Wall clock time and date at job start Tue Mar 31 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47300 * 2 1 4 4 C 1.50700 * 109.47393 * 239.99728 * 2 1 3 5 5 O 1.21281 * 119.99818 * 262.53164 * 4 2 1 6 6 N 1.34774 * 119.99819 * 82.52998 * 4 2 1 7 7 C 1.46921 * 120.63148 * 4.86719 * 6 4 2 8 8 C 1.52767 * 109.00987 * 233.58591 * 7 6 4 9 9 C 1.53042 * 109.38074 * 305.58886 * 8 7 6 10 10 C 1.50697 * 109.45084 * 181.25326 * 9 8 7 11 11 H 1.07998 * 120.00202 * 245.32042 * 10 9 8 12 12 C 1.37872 * 120.00047 * 65.31342 * 10 9 8 13 13 N 1.31513 * 120.00033 * 7.14188 * 12 10 9 14 14 Si 1.86808 * 120.00242 * 187.14251 * 12 10 9 15 15 H 1.48495 * 109.47143 * 94.98630 * 14 12 10 16 16 H 1.48499 * 109.46809 * 214.98658 * 14 12 10 17 17 H 1.48500 * 109.46883 * 334.98358 * 14 12 10 18 18 C 1.53043 * 109.53936 * 61.23828 * 9 8 7 19 19 C 1.46928 * 120.62922 * 185.14743 * 6 4 2 20 20 C 1.53007 * 109.47010 * 119.99872 * 2 1 3 21 21 H 1.08999 * 110.21399 * 60.70052 * 20 2 1 22 22 C 1.54485 * 110.24531 * 298.77014 * 20 2 1 23 23 C 1.54855 * 101.65968 * 266.39203 * 22 20 2 24 24 C 1.51279 * 104.21256 * 335.18959 * 23 22 20 25 25 O 1.21277 * 124.94530 * 196.24598 * 24 23 22 26 26 N 1.34427 * 110.11164 * 16.26912 * 24 23 22 27 27 H 1.09003 * 109.46757 * 58.88448 * 1 2 3 28 28 H 1.08998 * 109.47424 * 298.88831 * 1 2 3 29 29 H 1.09000 * 109.46992 * 178.88408 * 1 2 3 30 30 H 1.09004 * 109.58853 * 353.41702 * 7 6 4 31 31 H 1.08996 * 109.59118 * 113.84835 * 7 6 4 32 32 H 1.08997 * 109.56445 * 185.55308 * 8 7 6 33 33 H 1.09005 * 109.35791 * 65.49725 * 8 7 6 34 34 H 1.08999 * 109.46198 * 301.21761 * 9 8 7 35 35 H 0.97006 * 120.00098 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.49984 * 178.68398 * 18 9 8 37 37 H 1.08996 * 109.49379 * 58.58654 * 18 9 8 38 38 H 1.08998 * 109.58766 * 246.15667 * 19 6 4 39 39 H 1.09004 * 109.58407 * 6.44020 * 19 6 4 40 40 H 1.09003 * 110.96721 * 24.53562 * 22 20 2 41 41 H 1.08995 * 110.96872 * 148.29400 * 22 20 2 42 42 H 1.08998 * 110.46356 * 216.51468 * 23 22 20 43 43 H 1.08997 * 110.60543 * 93.93547 * 23 22 20 44 44 H 0.96996 * 124.34646 * 180.42376 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3632 -1.8754 -1.1653 6 7 2.1139 -0.0512 -2.4031 7 6 1.8187 1.3862 -2.4759 8 6 0.7638 1.6234 -3.5552 9 6 1.2407 1.0117 -4.8745 10 6 0.2152 1.2716 -5.9477 11 1 -0.3200 0.4467 -6.3944 12 6 -0.0399 2.5625 -6.3593 13 7 0.7063 3.5524 -5.9200 14 14 -1.4455 2.9056 -7.5410 15 1 -2.6566 3.2884 -6.7718 16 1 -1.0664 4.0153 -8.4521 17 1 -1.7306 1.6858 -8.3385 18 6 1.4262 -0.4975 -4.7014 19 6 2.4939 -0.7576 -3.6341 20 6 2.0400 -0.7213 1.2493 21 1 1.6936 -1.7547 1.2553 22 6 1.5604 0.0108 2.5224 23 6 2.7590 0.9465 2.8156 24 6 3.9375 0.2551 2.1662 25 8 5.1019 0.5053 2.3946 26 7 3.5061 -0.6767 1.2985 27 1 -0.3633 0.5311 -0.8799 28 1 -0.3634 0.4964 0.8997 29 1 -0.3633 -1.0275 -0.0200 30 1 1.4389 1.7304 -1.5139 31 1 2.7265 1.9334 -2.7297 32 1 0.6095 2.6945 -3.6855 33 1 -0.1729 1.1543 -3.2542 34 1 2.1899 1.4636 -5.1622 35 1 0.5270 4.4606 -6.2099 36 1 1.7433 -0.9360 -5.6476 37 1 0.4832 -0.9466 -4.3897 38 1 3.4580 -0.3889 -3.9842 39 1 2.5621 -1.8272 -3.4354 40 1 0.6551 0.5847 2.3247 41 1 1.4041 -0.6919 3.3408 42 1 2.9160 1.0393 3.8902 43 1 2.5983 1.9273 2.3683 44 1 4.0889 -1.2465 0.7728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329965696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:52 Heat of formation + Delta-G solvation = -108.660046 kcal Electronic energy + Delta-G solvation = -24825.512985 eV Core-core repulsion = 21354.907781 eV Total energy + Delta-G solvation = -3470.605203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93082 -40.72958 -38.60523 -37.65772 -35.35838 -34.23204 -32.81113 -32.12086 -31.64565 -28.16287 -27.67216 -25.82620 -24.44478 -23.87952 -22.20009 -21.44583 -21.07162 -19.59254 -18.85509 -18.40124 -17.88269 -17.41136 -16.54943 -16.40041 -16.25255 -15.98358 -15.10494 -15.04483 -14.82020 -14.64260 -14.53645 -14.16633 -14.09868 -13.99264 -13.71371 -13.23677 -13.22418 -12.93698 -12.78036 -12.69218 -12.51853 -12.43257 -12.18139 -12.13958 -11.95434 -11.69883 -11.48538 -11.01310 -10.92899 -10.92576 -10.57721 -10.39779 -10.14803 -9.56425 -8.11360 -6.20669 1.41198 1.44237 1.52729 1.56441 1.62442 2.06654 2.40902 2.44513 3.18582 3.29749 3.53973 3.66955 3.77650 4.02590 4.13654 4.19352 4.24297 4.32717 4.34429 4.44560 4.46878 4.55018 4.69933 4.75505 4.81451 4.83519 4.91276 4.94541 4.99120 5.14090 5.17314 5.22091 5.24835 5.37194 5.42610 5.50891 5.65828 5.80523 5.96788 6.05356 6.07816 6.37465 6.51601 6.89724 7.16073 7.20813 7.46782 8.95743 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.003719 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.244188 B = 7527.000972 C = 7726.646344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 H 0.107 0.893 4 C 0.514 3.486 5 O -0.585 6.585 6 N -0.603 5.603 7 C 0.112 3.888 8 C -0.106 4.106 9 C 0.043 3.957 10 C -0.535 4.535 11 H 0.047 0.953 12 C 0.022 3.978 13 N -0.914 5.914 14 Si 0.945 3.055 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.111 4.111 19 C 0.116 3.884 20 C 0.146 3.854 21 H 0.098 0.902 22 C -0.116 4.116 23 C -0.150 4.150 24 C 0.505 3.495 25 O -0.596 6.596 26 N -0.724 5.724 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.001 0.999 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -4.343 17.313 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 H 0.124 0.876 4 C 0.304 3.696 5 O -0.466 6.466 6 N -0.334 5.334 7 C -0.010 4.010 8 C -0.145 4.145 9 C 0.025 3.975 10 C -0.573 4.573 11 H 0.065 0.935 12 C -0.178 4.178 13 N -0.553 5.553 14 Si 0.771 3.229 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.149 4.149 19 C -0.006 4.006 20 C 0.040 3.960 21 H 0.116 0.884 22 C -0.153 4.153 23 C -0.190 4.190 24 C 0.294 3.706 25 O -0.478 6.478 26 N -0.375 5.375 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.124 0.876 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.377 -4.556 17.498 18.237 hybrid contribution 0.003 0.051 -1.818 1.819 sum -2.373 -4.506 15.680 16.486 Atomic orbital electron populations 1.21851 0.89715 1.03558 1.04744 1.21870 0.99752 1.01117 0.91419 0.87551 1.21194 0.76678 0.86680 0.85080 1.90618 1.51729 1.18356 1.85887 1.48256 1.66795 1.10460 1.07893 1.21848 0.98903 0.79223 1.00994 1.21620 0.96458 1.01617 0.94776 1.18616 0.95168 0.90629 0.93117 1.21506 1.22316 0.92352 1.21094 0.93455 1.25599 0.98126 0.96328 0.97726 1.70033 1.39054 1.00020 1.46170 0.85746 0.80318 0.77632 0.79172 1.19902 1.21215 1.19803 1.21830 0.97449 0.98542 0.97108 1.21546 0.97479 0.97340 0.84279 1.21672 0.78507 1.01453 0.94327 0.88441 1.22892 0.98551 0.98547 0.95307 1.22466 0.92045 1.00778 1.03731 1.21823 0.90282 0.79484 0.79050 1.90713 1.22346 1.68001 1.66708 1.46564 1.09240 1.38548 1.43155 0.92400 0.86971 0.91962 0.87554 0.92628 0.91898 0.93874 0.98090 0.92954 0.92268 0.93386 0.92235 0.90096 0.85540 0.87614 0.86444 0.86175 0.75968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.82 71.98 0.63 -1.49 16 2 C -0.12 -2.29 1.65 -11.54 -0.02 -2.31 16 3 H 0.11 1.87 6.41 -2.39 -0.02 1.86 16 4 C 0.51 15.00 6.54 87.66 0.57 15.57 16 5 O -0.58 -20.08 15.23 -3.03 -0.05 -20.12 16 6 N -0.60 -19.49 2.98 -819.73 -2.44 -21.93 16 7 C 0.11 3.59 6.03 86.22 0.52 4.11 16 8 C -0.11 -4.31 5.19 30.53 0.16 -4.15 16 9 C 0.04 2.02 1.93 -11.51 -0.02 2.00 16 10 C -0.53 -28.08 8.49 25.60 0.22 -27.86 16 11 H 0.05 2.49 7.76 -2.91 -0.02 2.47 16 12 C 0.02 1.13 5.23 84.65 0.44 1.58 16 13 N -0.91 -49.96 12.03 21.45 0.26 -49.70 16 14 Si 0.94 41.79 29.54 68.60 2.03 43.82 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 C -0.11 -4.42 5.30 30.67 0.16 -4.26 16 19 C 0.12 4.09 6.42 86.36 0.55 4.65 16 20 C 0.15 2.40 2.57 45.45 0.12 2.52 16 21 H 0.10 1.70 7.88 -2.39 -0.02 1.68 16 22 C -0.12 -0.96 6.54 31.73 0.21 -0.76 16 23 C -0.15 -1.91 6.86 30.67 0.21 -1.70 16 24 C 0.50 12.15 8.43 87.90 0.74 12.89 16 25 O -0.60 -20.45 18.03 -3.02 -0.05 -20.50 16 26 N -0.72 -16.23 5.47 -439.42 -2.41 -18.64 16 27 H 0.06 1.09 7.58 -2.39 -0.02 1.08 16 28 H 0.11 0.81 6.14 -2.39 -0.01 0.79 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 2.60 5.08 -2.38 -0.01 2.59 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 2.89 6.77 -2.39 -0.02 2.88 16 33 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.00 0.05 8.11 -2.39 -0.02 0.03 16 35 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 2.81 7.04 -2.38 -0.02 2.80 16 40 H 0.13 0.40 5.88 -2.39 -0.01 0.39 16 41 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.40 10.43 8.78 -92.71 -0.81 9.61 16 Total: -1.00 -69.59 343.61 2.03 -67.56 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.19 Total: 18.72 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.50 Total: 0.79 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -4.59 Total: -90.27 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.10 Total: -40.62 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -69.59 2.03 -67.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.096 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds