Wall clock time and date at job start Tue Mar 31 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47554 * 2 1 4 4 C 1.50702 * 109.47469 * 119.99755 * 2 1 3 5 5 O 1.21282 * 119.99934 * 106.77389 * 4 2 1 6 6 N 1.34779 * 120.00104 * 286.78441 * 4 2 1 7 7 C 1.46923 * 120.62626 * 354.84896 * 6 4 2 8 8 C 1.53194 * 108.77725 * 233.58626 * 7 6 4 9 9 C 1.53036 * 109.31594 * 305.37201 * 8 7 6 10 10 C 1.50701 * 109.45998 * 181.38042 * 9 8 7 11 11 H 1.07993 * 120.00053 * 359.97358 * 10 9 8 12 12 C 1.37878 * 119.99910 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00215 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00007 * 180.27547 * 12 10 9 15 15 H 1.48497 * 109.47014 * 179.72698 * 14 12 10 16 16 H 1.48496 * 109.46900 * 299.72602 * 14 12 10 17 17 H 1.48496 * 109.46773 * 59.72898 * 14 12 10 18 18 C 1.53036 * 109.52698 * 61.36718 * 9 8 7 19 19 C 1.46927 * 120.63367 * 174.83310 * 6 4 2 20 20 C 1.52997 * 109.47332 * 240.00086 * 2 1 3 21 21 H 1.09000 * 110.21952 * 184.52784 * 20 2 1 22 22 C 1.54476 * 110.24608 * 62.50060 * 20 2 1 23 23 C 1.54634 * 101.76405 * 266.41658 * 22 20 2 24 24 C 1.51281 * 104.19574 * 335.20407 * 23 22 20 25 25 O 1.21282 * 124.94430 * 196.23204 * 24 23 22 26 26 N 1.34417 * 110.11814 * 16.24717 * 24 23 22 27 27 H 1.08999 * 109.46915 * 172.38566 * 1 2 3 28 28 H 1.09003 * 109.46927 * 292.38252 * 1 2 3 29 29 H 1.08993 * 109.46741 * 52.38157 * 1 2 3 30 30 H 1.09001 * 109.58756 * 113.80725 * 7 6 4 31 31 H 1.08994 * 109.59247 * 353.37772 * 7 6 4 32 32 H 1.09002 * 109.50063 * 185.41409 * 8 7 6 33 33 H 1.09003 * 109.49158 * 65.32286 * 8 7 6 34 34 H 1.08996 * 109.46079 * 301.35730 * 9 8 7 35 35 H 0.96997 * 120.00699 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.49968 * 58.58213 * 18 9 8 37 37 H 1.08999 * 109.50071 * 178.67700 * 18 9 8 38 38 H 1.08996 * 109.58376 * 246.19540 * 19 6 4 39 39 H 1.09000 * 109.58413 * 6.48000 * 19 6 4 40 40 H 1.08996 * 110.97339 * 24.53992 * 22 20 2 41 41 H 1.09001 * 110.96904 * 148.30501 * 22 20 2 42 42 H 1.08999 * 110.48475 * 216.52439 * 23 22 20 43 43 H 1.09000 * 110.59487 * 93.93549 * 23 22 20 44 44 H 0.97005 * 124.35392 * 180.38114 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5204 -1.8166 1.1353 6 7 1.9393 -0.1164 2.4368 7 6 1.4551 1.2657 2.5551 8 6 2.4853 2.0836 3.3404 9 6 2.7616 1.3974 4.6801 10 6 3.7493 2.2171 5.4698 11 1 4.1410 3.1351 5.0574 12 6 4.1528 1.7950 6.7188 13 7 3.6762 0.6768 7.2209 14 14 5.3713 2.8150 7.7009 15 1 5.6350 2.1524 9.0034 16 1 6.6413 2.9361 6.9410 17 1 4.8060 4.1674 7.9390 18 6 3.3405 0.0028 4.4308 19 6 2.3198 -0.8388 3.6583 20 6 2.0400 -0.7212 -1.2492 21 1 3.1269 -0.7988 -1.2221 22 6 1.5873 0.0286 -2.5216 23 6 0.2753 -0.7104 -2.8730 24 6 0.4404 -2.0776 -2.2469 25 8 -0.2300 -3.0513 -2.5178 26 7 1.4380 -2.0562 -1.3463 27 1 -0.3633 -1.0186 -0.1362 28 1 -0.3633 0.3913 0.9503 29 1 -0.3632 0.6273 -0.8140 30 1 0.5018 1.2749 3.0836 31 1 1.3285 1.6950 1.5613 32 1 2.0951 3.0856 3.5185 33 1 3.4104 2.1494 2.7677 34 1 1.8316 1.3093 5.2417 35 1 3.9603 0.3796 8.0994 36 1 4.2575 0.0884 3.8478 37 1 3.5590 -0.4764 5.3851 38 1 1.4370 -1.0012 4.2766 39 1 2.7614 -1.7991 3.3923 40 1 1.3974 1.0804 -2.3079 41 1 2.3215 -0.0793 -3.3200 42 1 0.1638 -0.7967 -3.9539 43 1 -0.5827 -0.1945 -2.4419 44 1 1.7231 -2.8243 -0.8269 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329965697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:55 Heat of formation + Delta-G solvation = -82.989734 kcal Electronic energy + Delta-G solvation = -24790.587967 eV Core-core repulsion = 21321.095912 eV Total energy + Delta-G solvation = -3469.492055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11240 -39.50068 -37.22768 -36.49123 -33.80136 -32.63621 -31.39318 -31.05730 -30.04234 -27.77143 -26.36676 -24.32062 -22.90868 -22.43372 -21.20973 -20.57582 -19.63399 -18.42719 -17.32497 -17.04686 -16.61906 -16.21618 -15.52805 -15.14531 -14.73559 -14.61802 -13.97614 -13.94829 -13.55955 -13.40216 -13.14011 -13.01464 -12.80726 -12.70495 -12.45535 -12.32553 -12.03473 -11.81003 -11.55874 -11.39187 -11.19612 -11.09110 -10.96145 -10.72379 -10.48805 -10.14116 -9.94690 -9.64396 -9.55481 -9.18723 -9.11831 -8.98222 -8.42559 -8.08025 -6.06835 -4.14114 2.52853 2.85837 3.26343 3.31496 3.32340 3.33871 3.37518 4.14924 4.22672 4.36748 4.41154 4.64220 4.74919 4.89741 5.00385 5.10251 5.22916 5.30856 5.38835 5.44670 5.50115 5.59131 5.65015 5.69035 5.73777 5.82389 5.94943 6.04629 6.19875 6.33431 6.38442 6.53520 6.73556 6.81023 6.88727 7.07562 7.12231 7.27075 7.63566 7.82096 7.87002 8.00553 8.23483 8.34019 8.45719 8.89080 9.51390 10.98495 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.003364 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.855703 B = 8320.261382 C = 8572.515501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 H 0.108 0.892 4 C 0.516 3.484 5 O -0.557 6.557 6 N -0.596 5.596 7 C 0.105 3.895 8 C -0.125 4.125 9 C 0.049 3.951 10 C -0.516 4.516 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.287 1.287 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.122 4.122 19 C 0.108 3.892 20 C 0.150 3.850 21 H 0.095 0.905 22 C -0.128 4.128 23 C -0.161 4.161 24 C 0.515 3.485 25 O -0.545 6.545 26 N -0.709 5.709 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 2.236 -16.559 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 H 0.126 0.874 4 C 0.304 3.696 5 O -0.436 6.436 6 N -0.328 5.328 7 C -0.018 4.018 8 C -0.163 4.163 9 C 0.031 3.969 10 C -0.554 4.554 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.719 3.281 15 H -0.213 1.213 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.160 4.160 19 C -0.013 4.013 20 C 0.043 3.957 21 H 0.113 0.887 22 C -0.165 4.165 23 C -0.201 4.201 24 C 0.302 3.698 25 O -0.423 6.423 26 N -0.365 5.365 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.592 1.121 -16.612 17.564 hybrid contribution 0.888 0.410 1.080 1.457 sum -4.704 1.531 -15.532 16.301 Atomic orbital electron populations 1.21925 0.92640 1.02985 1.03050 1.21820 0.98302 1.01177 0.93493 0.87416 1.20362 0.78607 0.86206 0.84446 1.90597 1.46128 1.20860 1.86025 1.48219 1.63526 1.14443 1.06602 1.21937 0.98179 0.81314 1.00382 1.22025 0.97107 0.98261 0.98906 1.18624 0.96623 0.91680 0.90001 1.21137 1.25635 1.07520 1.01103 0.92760 1.24966 0.96335 0.95082 0.97543 1.69826 1.43899 1.21502 1.17642 0.86672 0.81690 0.80399 0.79320 1.21291 1.20329 1.20292 1.22001 0.95532 0.98241 1.00268 1.21900 0.99242 0.96150 0.84030 1.21406 0.98738 0.82351 0.93205 0.88732 1.22666 0.96847 1.00256 0.96769 1.22491 0.99849 0.94752 1.03036 1.20894 0.79321 0.90177 0.79446 1.90746 1.48130 1.38553 1.64846 1.46341 1.35655 1.12788 1.41698 0.91954 0.91444 0.91159 0.91841 0.91025 0.92003 0.92841 0.95518 0.92839 0.94354 0.87892 0.92386 0.90611 0.88821 0.89571 0.88309 0.87571 0.73994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.47 37.16 0.28 -1.11 16 2 C -0.13 -1.30 1.62 -91.77 -0.15 -1.45 16 3 H 0.11 0.91 6.71 -51.93 -0.35 0.56 16 4 C 0.52 7.85 6.86 -10.98 -0.08 7.77 16 5 O -0.56 -10.02 14.10 5.56 0.08 -9.94 16 6 N -0.60 -9.73 2.97 -172.77 -0.51 -10.25 16 7 C 0.10 1.50 5.23 -3.71 -0.02 1.48 16 8 C -0.12 -2.23 5.30 -26.61 -0.14 -2.38 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.52 -13.32 8.56 -34.44 -0.29 -13.62 16 11 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 12 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 13 N -0.89 -24.33 11.31 55.43 0.63 -23.70 16 14 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.12 -2.72 5.15 -26.61 -0.14 -2.85 16 19 C 0.11 2.07 6.44 -3.71 -0.02 2.04 16 20 C 0.15 1.42 3.00 -67.01 -0.20 1.22 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.13 -0.80 6.26 -25.10 -0.16 -0.95 16 23 C -0.16 -1.25 6.06 -26.74 -0.16 -1.41 16 24 C 0.52 6.41 7.12 -10.86 -0.08 6.33 16 25 O -0.54 -9.17 18.03 5.56 0.10 -9.07 16 26 N -0.71 -8.44 4.78 -52.76 -0.25 -8.69 16 27 H 0.06 0.71 6.37 -51.93 -0.33 0.38 16 28 H 0.07 0.66 6.82 -51.93 -0.35 0.30 16 29 H 0.07 0.47 5.99 -51.93 -0.31 0.16 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.78 5.27 -51.93 -0.27 0.51 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 2.60 6.03 -51.93 -0.31 2.28 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 40 H 0.09 0.40 7.82 -51.93 -0.41 0.00 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.11 0.70 6.24 -51.93 -0.32 0.38 16 44 H 0.42 5.70 7.84 -40.82 -0.32 5.38 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -31.16 333.93 -8.09 -39.24 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.69 Total: 4.32 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.44 Total: -2.45 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.14 Total: -42.64 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.16 -8.09 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.745 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds