Wall clock time and date at job start Tue Mar 31 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47554 * 2 1 4 4 C 1.50702 * 109.47469 * 119.99755 * 2 1 3 5 5 O 1.21282 * 119.99934 * 106.77389 * 4 2 1 6 6 N 1.34779 * 120.00104 * 286.78441 * 4 2 1 7 7 C 1.46923 * 120.62626 * 354.84896 * 6 4 2 8 8 C 1.53194 * 108.77725 * 233.58626 * 7 6 4 9 9 C 1.53036 * 109.31594 * 305.37201 * 8 7 6 10 10 C 1.50701 * 109.45998 * 181.38042 * 9 8 7 11 11 H 1.07993 * 120.00053 * 359.97358 * 10 9 8 12 12 C 1.37878 * 119.99910 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00215 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00007 * 180.27547 * 12 10 9 15 15 H 1.48497 * 109.47014 * 179.72698 * 14 12 10 16 16 H 1.48496 * 109.46900 * 299.72602 * 14 12 10 17 17 H 1.48496 * 109.46773 * 59.72898 * 14 12 10 18 18 C 1.53036 * 109.52698 * 61.36718 * 9 8 7 19 19 C 1.46927 * 120.63367 * 174.83310 * 6 4 2 20 20 C 1.52997 * 109.47332 * 240.00086 * 2 1 3 21 21 H 1.09000 * 110.21952 * 184.52784 * 20 2 1 22 22 C 1.54476 * 110.24608 * 62.50060 * 20 2 1 23 23 C 1.54634 * 101.76405 * 266.41658 * 22 20 2 24 24 C 1.51281 * 104.19574 * 335.20407 * 23 22 20 25 25 O 1.21282 * 124.94430 * 196.23204 * 24 23 22 26 26 N 1.34417 * 110.11814 * 16.24717 * 24 23 22 27 27 H 1.08999 * 109.46915 * 172.38566 * 1 2 3 28 28 H 1.09003 * 109.46927 * 292.38252 * 1 2 3 29 29 H 1.08993 * 109.46741 * 52.38157 * 1 2 3 30 30 H 1.09001 * 109.58756 * 113.80725 * 7 6 4 31 31 H 1.08994 * 109.59247 * 353.37772 * 7 6 4 32 32 H 1.09002 * 109.50063 * 185.41409 * 8 7 6 33 33 H 1.09003 * 109.49158 * 65.32286 * 8 7 6 34 34 H 1.08996 * 109.46079 * 301.35730 * 9 8 7 35 35 H 0.96997 * 120.00699 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.49968 * 58.58213 * 18 9 8 37 37 H 1.08999 * 109.50071 * 178.67700 * 18 9 8 38 38 H 1.08996 * 109.58376 * 246.19540 * 19 6 4 39 39 H 1.09000 * 109.58413 * 6.48000 * 19 6 4 40 40 H 1.08996 * 110.97339 * 24.53992 * 22 20 2 41 41 H 1.09001 * 110.96904 * 148.30501 * 22 20 2 42 42 H 1.08999 * 110.48475 * 216.52439 * 23 22 20 43 43 H 1.09000 * 110.59487 * 93.93549 * 23 22 20 44 44 H 0.97005 * 124.35392 * 180.38114 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5204 -1.8166 1.1353 6 7 1.9393 -0.1164 2.4368 7 6 1.4551 1.2657 2.5551 8 6 2.4853 2.0836 3.3404 9 6 2.7616 1.3974 4.6801 10 6 3.7493 2.2171 5.4698 11 1 4.1410 3.1351 5.0574 12 6 4.1528 1.7950 6.7188 13 7 3.6762 0.6768 7.2209 14 14 5.3713 2.8150 7.7009 15 1 5.6350 2.1524 9.0034 16 1 6.6413 2.9361 6.9410 17 1 4.8060 4.1674 7.9390 18 6 3.3405 0.0028 4.4308 19 6 2.3198 -0.8388 3.6583 20 6 2.0400 -0.7212 -1.2492 21 1 3.1269 -0.7988 -1.2221 22 6 1.5873 0.0286 -2.5216 23 6 0.2753 -0.7104 -2.8730 24 6 0.4404 -2.0776 -2.2469 25 8 -0.2300 -3.0513 -2.5178 26 7 1.4380 -2.0562 -1.3463 27 1 -0.3633 -1.0186 -0.1362 28 1 -0.3633 0.3913 0.9503 29 1 -0.3632 0.6273 -0.8140 30 1 0.5018 1.2749 3.0836 31 1 1.3285 1.6950 1.5613 32 1 2.0951 3.0856 3.5185 33 1 3.4104 2.1494 2.7677 34 1 1.8316 1.3093 5.2417 35 1 3.9603 0.3796 8.0994 36 1 4.2575 0.0884 3.8478 37 1 3.5590 -0.4764 5.3851 38 1 1.4370 -1.0012 4.2766 39 1 2.7614 -1.7991 3.3923 40 1 1.3974 1.0804 -2.3079 41 1 2.3215 -0.0793 -3.3200 42 1 0.1638 -0.7967 -3.9539 43 1 -0.5827 -0.1945 -2.4419 44 1 1.7231 -2.8243 -0.8269 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329965697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:54 Heat of formation + Delta-G solvation = -104.229066 kcal Electronic energy + Delta-G solvation = -24791.508973 eV Core-core repulsion = 21321.095912 eV Total energy + Delta-G solvation = -3470.413062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03843 -40.68228 -38.54656 -37.63636 -35.43304 -33.82565 -32.67655 -32.10452 -31.46137 -28.49903 -28.06259 -25.52569 -24.28349 -23.77268 -22.20701 -21.45435 -20.97031 -19.70975 -18.57416 -18.21072 -17.87462 -17.47366 -16.61120 -16.51071 -16.28407 -15.78389 -15.06800 -15.01759 -14.85965 -14.61458 -14.44823 -14.36535 -13.99015 -13.84910 -13.43264 -13.32591 -13.06566 -12.98594 -12.80993 -12.75514 -12.46216 -12.39817 -12.14382 -12.13118 -11.89565 -11.68983 -11.41421 -11.09381 -10.89957 -10.82489 -10.53604 -10.38486 -10.05930 -9.51129 -8.07650 -6.21873 1.42512 1.43206 1.50319 1.60700 1.70218 2.10694 2.43708 2.52115 3.19192 3.35343 3.54735 3.70936 3.82624 4.08608 4.11310 4.19779 4.30011 4.36986 4.38526 4.48312 4.55032 4.62986 4.72445 4.72700 4.85792 4.87873 4.93020 4.99709 5.00404 5.17996 5.19158 5.20418 5.27824 5.33367 5.47643 5.54712 5.67269 5.89474 5.98946 6.12688 6.18403 6.38206 6.59438 6.90868 7.21093 7.30172 7.46829 8.95342 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.003364 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.855703 B = 8320.261382 C = 8572.515501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 H 0.144 0.856 4 C 0.508 3.492 5 O -0.591 6.591 6 N -0.602 5.602 7 C 0.110 3.890 8 C -0.118 4.118 9 C 0.044 3.956 10 C -0.532 4.532 11 H 0.056 0.944 12 C 0.011 3.989 13 N -0.918 5.918 14 Si 0.949 3.051 15 H -0.289 1.289 16 H -0.274 1.274 17 H -0.269 1.269 18 C -0.110 4.110 19 C 0.120 3.880 20 C 0.142 3.858 21 H 0.089 0.911 22 C -0.111 4.111 23 C -0.152 4.152 24 C 0.504 3.496 25 O -0.602 6.602 26 N -0.716 5.716 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.000 1.000 35 H 0.259 0.741 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 5.337 -18.999 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 H 0.161 0.839 4 C 0.298 3.702 5 O -0.473 6.473 6 N -0.334 5.334 7 C -0.012 4.012 8 C -0.156 4.156 9 C 0.026 3.974 10 C -0.570 4.570 11 H 0.074 0.926 12 C -0.187 4.187 13 N -0.557 5.557 14 Si 0.776 3.224 15 H -0.215 1.215 16 H -0.199 1.199 17 H -0.194 1.194 18 C -0.148 4.148 19 C -0.003 4.003 20 C 0.037 3.963 21 H 0.107 0.893 22 C -0.149 4.149 23 C -0.191 4.191 24 C 0.293 3.707 25 O -0.484 6.484 26 N -0.368 5.368 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.018 0.982 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.117 4.282 -19.070 20.480 hybrid contribution 1.099 -0.616 1.887 2.269 sum -5.018 3.666 -17.183 18.272 Atomic orbital electron populations 1.21967 0.91458 1.02300 1.04667 1.21925 0.98975 1.02150 0.90644 0.83872 1.21402 0.77513 0.86017 0.85272 1.90591 1.47450 1.22686 1.86549 1.48267 1.63884 1.15239 1.05971 1.22058 0.96885 0.79569 1.02657 1.21890 0.98351 0.98998 0.96339 1.18614 0.94574 0.91880 0.92378 1.21598 1.25993 1.07820 1.01582 0.92615 1.25729 0.98090 0.96074 0.98813 1.69979 1.45155 1.22863 1.17743 0.85742 0.79711 0.79209 0.77773 1.21499 1.19931 1.19375 1.21738 0.95794 0.98635 0.98678 1.21474 0.98051 0.95418 0.85356 1.21660 0.98447 0.81494 0.94737 0.89269 1.22750 0.95888 1.01340 0.94909 1.22547 1.01487 0.91515 1.03597 1.21807 0.78361 0.91468 0.79076 1.90705 1.50101 1.41022 1.66606 1.46582 1.35614 1.13470 1.41088 0.94572 0.91463 0.87190 0.91153 0.86020 0.90666 0.93038 0.98204 0.93183 0.95911 0.91504 0.92713 0.91810 0.85154 0.88135 0.86856 0.85660 0.75801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.47 71.98 0.54 -1.59 16 2 C -0.12 -1.92 1.62 -11.54 -0.02 -1.94 16 3 H 0.14 1.45 6.71 -2.38 -0.02 1.44 16 4 C 0.51 14.64 6.86 87.66 0.60 15.24 16 5 O -0.59 -21.46 14.10 -3.04 -0.04 -21.50 16 6 N -0.60 -18.87 2.97 -818.91 -2.43 -21.30 16 7 C 0.11 2.80 5.23 86.36 0.45 3.25 16 8 C -0.12 -3.97 5.30 30.67 0.16 -3.81 16 9 C 0.04 2.03 2.06 -11.52 -0.02 2.00 16 10 C -0.53 -27.70 8.56 25.60 0.22 -27.48 16 11 H 0.06 2.81 7.74 -2.91 -0.02 2.79 16 12 C 0.01 0.61 5.30 84.65 0.45 1.06 16 13 N -0.92 -51.86 11.31 21.45 0.24 -51.61 16 14 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 C -0.11 -5.08 5.15 30.67 0.16 -4.92 16 19 C 0.12 4.72 6.44 86.36 0.56 5.27 16 20 C 0.14 2.26 3.00 45.44 0.14 2.40 16 21 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 22 C -0.11 -0.79 6.26 31.65 0.20 -0.60 16 23 C -0.15 -1.75 6.06 30.59 0.19 -1.56 16 24 C 0.50 12.00 7.12 87.90 0.63 12.63 16 25 O -0.60 -20.65 18.03 -3.04 -0.05 -20.70 16 26 N -0.72 -16.49 4.78 -439.44 -2.10 -18.59 16 27 H 0.04 0.74 6.37 -2.39 -0.02 0.72 16 28 H 0.07 1.01 6.82 -2.39 -0.02 1.00 16 29 H 0.11 0.75 5.99 -2.39 -0.01 0.74 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.12 1.92 5.27 -2.39 -0.01 1.91 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 3.57 6.03 -2.39 -0.01 3.56 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.63 7.00 -2.39 -0.02 2.61 16 40 H 0.13 0.09 7.82 -2.39 -0.02 0.07 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.13 1.00 6.24 -2.39 -0.01 0.98 16 44 H 0.40 11.41 7.84 -92.70 -0.73 10.68 16 Total: -1.00 -73.92 333.93 2.16 -71.76 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.29 Total: 17.56 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 4.24 Total: -0.02 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -4.29 Total: -91.51 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.10 Total: -42.20 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.92 2.16 -71.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.471 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds