Wall clock time and date at job start Tue Mar 31 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47358 * 2 1 4 4 C 1.50703 * 109.46711 * 120.00088 * 2 1 3 5 5 O 1.21280 * 120.00087 * 95.29380 * 4 2 1 6 6 N 1.34775 * 119.99899 * 275.29569 * 4 2 1 7 7 C 1.46929 * 120.63361 * 175.33758 * 6 4 2 8 8 C 1.53187 * 108.77539 * 233.62958 * 7 6 4 9 9 C 1.53034 * 109.31581 * 305.36387 * 8 7 6 10 10 C 1.50700 * 109.46091 * 181.38489 * 9 8 7 11 11 H 1.07998 * 120.00167 * 359.97241 * 10 9 8 12 12 C 1.37885 * 119.99793 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99921 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46992 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.46779 * 300.00128 * 14 12 10 17 17 H 1.48493 * 109.47152 * 59.99680 * 14 12 10 18 18 C 1.53044 * 109.52844 * 61.36946 * 9 8 7 19 19 C 1.46923 * 120.63121 * 355.35930 * 6 4 2 20 20 C 1.53000 * 109.47053 * 239.99416 * 2 1 3 21 21 H 1.08997 * 110.21909 * 299.30996 * 20 2 1 22 22 C 1.54481 * 110.24255 * 61.23217 * 20 2 1 23 23 C 1.54628 * 101.76273 * 93.58578 * 22 20 2 24 24 C 1.51278 * 104.19755 * 24.79849 * 23 22 20 25 25 O 1.21285 * 124.94624 * 163.75124 * 24 23 22 26 26 N 1.34625 * 110.14715 * 343.76502 * 24 23 22 27 27 H 1.09004 * 109.46943 * 64.76061 * 1 2 3 28 28 H 1.08992 * 109.47555 * 184.75926 * 1 2 3 29 29 H 1.09004 * 109.46695 * 304.76789 * 1 2 3 30 30 H 1.08996 * 109.58619 * 113.83793 * 7 6 4 31 31 H 1.08999 * 109.69721 * 353.48768 * 7 6 4 32 32 H 1.08997 * 109.49909 * 185.40684 * 8 7 6 33 33 H 1.09001 * 109.52563 * 65.33158 * 8 7 6 34 34 H 1.08998 * 109.45771 * 301.36273 * 9 8 7 35 35 H 0.96995 * 119.99311 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.49470 * 58.58050 * 18 9 8 37 37 H 1.08998 * 109.49745 * 178.68007 * 18 9 8 38 38 H 1.09000 * 109.58851 * 246.15904 * 19 6 4 39 39 H 1.09006 * 109.58838 * 6.43812 * 19 6 4 40 40 H 1.08998 * 110.97227 * 211.69983 * 22 20 2 41 41 H 1.09000 * 110.97040 * 335.43094 * 22 20 2 42 42 H 1.09000 * 110.48982 * 143.47557 * 23 22 20 43 43 H 1.09004 * 110.48674 * 266.11696 * 23 22 20 44 44 H 0.97000 * 124.46992 * 179.53540 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3257 -1.8859 1.1748 6 7 2.1553 -0.0396 2.3929 7 6 2.5456 -0.7402 3.6240 8 6 1.5083 -0.4421 4.7110 9 6 1.3622 1.0730 4.8696 10 6 0.3674 1.3700 5.9618 11 1 -0.1130 0.5594 6.4897 12 6 0.0704 2.6765 6.2872 13 7 0.6549 3.6635 5.6440 14 14 -1.1623 3.0447 7.6416 15 1 -1.3043 4.5148 7.7955 16 1 -2.4784 2.4552 7.2867 17 1 -0.6848 2.4565 8.9187 18 6 0.8708 1.6801 3.5534 19 6 1.9011 1.4062 2.4533 20 6 2.0400 -0.7214 -1.2492 21 1 1.6935 -1.7548 -1.2552 22 6 1.5605 0.0106 -2.5223 23 6 2.7558 0.9462 -2.8170 24 6 3.9356 0.2567 -2.1680 25 8 5.0996 0.5081 -2.3977 26 7 3.5061 -0.6769 -1.2984 27 1 -0.3633 0.4382 -0.9296 28 1 -0.3634 -1.0240 0.0853 29 1 -0.3633 0.5861 0.8442 30 1 3.5257 -0.3905 3.9484 31 1 2.5834 -1.8138 3.4395 32 1 1.8357 -0.8768 5.6554 33 1 0.5481 -0.8723 4.4261 34 1 2.3281 1.5055 5.1306 35 1 0.4457 4.5826 5.8727 36 1 -0.0831 1.2297 3.2789 37 1 0.7446 2.7560 3.6738 38 1 2.8286 1.9311 2.6823 39 1 1.5143 1.7497 1.4938 40 1 1.4042 -0.6921 -3.3408 41 1 0.6549 0.5841 -2.3248 42 1 2.9120 1.0387 -3.8918 43 1 2.5927 1.9263 -2.3686 44 1 4.0888 -1.2468 -0.7725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329965698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:57 Heat of formation + Delta-G solvation = -86.661717 kcal Electronic energy + Delta-G solvation = -24847.108321 eV Core-core repulsion = 21377.457037 eV Total energy + Delta-G solvation = -3469.651284 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92314 -39.52110 -37.23955 -36.48710 -33.72838 -33.05755 -31.46184 -31.05101 -30.09418 -26.93950 -26.41703 -24.68335 -22.97320 -22.41866 -21.08858 -20.59797 -19.69437 -18.25806 -17.75828 -16.98500 -16.42596 -16.19809 -15.38652 -15.17413 -14.75922 -14.60014 -14.00094 -13.87409 -13.65583 -13.30681 -13.20964 -13.06270 -12.87003 -12.69234 -12.57200 -12.00714 -11.89147 -11.83344 -11.57698 -11.40953 -11.33283 -10.98664 -10.95219 -10.71948 -10.46043 -10.16615 -9.95349 -9.74535 -9.43841 -9.24668 -9.18125 -8.98175 -8.43848 -8.08709 -6.08838 -4.15267 2.50401 2.85136 3.25619 3.28391 3.30791 3.32960 3.33978 4.14614 4.25865 4.35978 4.43917 4.69918 4.78634 5.00085 5.07372 5.13892 5.21460 5.36795 5.42428 5.52595 5.54004 5.65729 5.73044 5.75921 5.85079 5.90062 6.00243 6.07546 6.11140 6.21488 6.37627 6.58284 6.71743 6.80992 6.95878 6.98742 7.05580 7.19377 7.59670 7.83946 7.84724 7.97054 8.17243 8.33601 8.44149 8.87955 9.50204 10.96643 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003747 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.683926 B = 7471.500136 C = 7693.990455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.097 0.903 4 C 0.518 3.482 5 O -0.562 6.562 6 N -0.596 5.596 7 C 0.111 3.889 8 C -0.123 4.123 9 C 0.049 3.951 10 C -0.514 4.514 11 H 0.054 0.946 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.287 1.287 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.123 4.123 19 C 0.100 3.900 20 C 0.148 3.852 21 H 0.100 0.900 22 C -0.132 4.132 23 C -0.158 4.158 24 C 0.516 3.484 25 O -0.541 6.541 26 N -0.721 5.721 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.039 0.961 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -4.696 -14.801 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 H 0.115 0.885 4 C 0.306 3.694 5 O -0.442 6.442 6 N -0.327 5.327 7 C -0.011 4.011 8 C -0.161 4.161 9 C 0.030 3.970 10 C -0.552 4.552 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.213 1.213 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.161 4.161 19 C -0.022 4.022 20 C 0.042 3.958 21 H 0.118 0.882 22 C -0.169 4.169 23 C -0.198 4.198 24 C 0.303 3.697 25 O -0.418 6.418 26 N -0.376 5.376 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.383 -4.891 -14.998 15.780 hybrid contribution -0.506 0.166 1.229 1.339 sum -0.889 -4.725 -13.769 14.585 Atomic orbital electron populations 1.21804 0.91543 1.03427 1.03383 1.21792 0.98502 1.01243 0.93296 0.88492 1.20350 0.77621 0.86956 0.84451 1.90628 1.51930 1.16399 1.85243 1.48235 1.66310 1.09924 1.08207 1.21702 0.98210 0.97064 0.84122 1.22002 0.97202 1.00782 0.96094 1.18629 0.97029 0.88544 0.92792 1.21160 1.24255 0.91882 1.17880 0.92754 1.24952 0.96163 0.96369 0.96372 1.69821 1.42956 0.99117 1.41170 0.86676 0.81785 0.77095 0.82564 1.21277 1.20321 1.20296 1.22019 0.95052 1.05110 0.93914 1.22128 1.00697 0.78691 1.00713 1.21482 0.79901 1.01088 0.93334 0.88237 1.22779 0.98572 0.98765 0.96819 1.22358 0.93861 1.00446 1.03107 1.21018 0.89843 0.79587 0.79272 1.90749 1.19847 1.66271 1.64917 1.46385 1.08161 1.39172 1.43845 0.90947 0.91682 0.90863 0.92267 0.90394 0.92132 0.92973 0.95491 0.92875 0.94182 0.87735 0.91973 0.91295 0.89552 0.88349 0.88032 0.87648 0.74701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.94 37.16 0.33 -1.07 16 2 C -0.13 -1.43 1.67 -91.77 -0.15 -1.58 16 3 H 0.10 1.07 6.29 -51.93 -0.33 0.74 16 4 C 0.52 8.05 6.51 -10.98 -0.07 7.98 16 5 O -0.56 -9.99 15.40 5.56 0.09 -9.91 16 6 N -0.60 -10.01 2.97 -172.77 -0.51 -10.52 16 7 C 0.11 1.96 6.42 -3.71 -0.02 1.94 16 8 C -0.12 -2.42 5.30 -26.62 -0.14 -2.56 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.51 -13.29 8.56 -34.44 -0.29 -13.59 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 12 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 13 N -0.89 -23.80 11.31 55.43 0.63 -23.17 16 14 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.12 -2.54 5.15 -26.61 -0.14 -2.67 16 19 C 0.10 1.67 6.25 -3.71 -0.02 1.65 16 20 C 0.15 1.46 2.59 -67.01 -0.17 1.29 16 21 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 22 C -0.13 -0.88 6.52 -25.10 -0.16 -1.05 16 23 C -0.16 -1.30 6.86 -26.74 -0.18 -1.49 16 24 C 0.52 6.59 8.44 -10.77 -0.09 6.50 16 25 O -0.54 -9.24 18.03 5.55 0.10 -9.14 16 26 N -0.72 -8.60 5.51 -52.72 -0.29 -8.89 16 27 H 0.07 0.49 6.03 -51.93 -0.31 0.17 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 2.44 6.03 -51.93 -0.31 2.13 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.96 5.15 -51.93 -0.27 0.70 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.50 5.85 -51.93 -0.30 0.19 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.41 5.36 8.89 -40.82 -0.36 5.00 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -30.61 343.11 -8.09 -38.70 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.84 Total: 4.61 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.41 Total: -2.18 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.18 Total: -42.58 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.19 Total: -19.05 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.61 -8.09 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.965 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds