Wall clock time and date at job start Tue Mar 31 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47358 * 2 1 4 4 C 1.50703 * 109.46711 * 120.00088 * 2 1 3 5 5 O 1.21280 * 120.00087 * 95.29380 * 4 2 1 6 6 N 1.34775 * 119.99899 * 275.29569 * 4 2 1 7 7 C 1.46929 * 120.63361 * 175.33758 * 6 4 2 8 8 C 1.53187 * 108.77539 * 233.62958 * 7 6 4 9 9 C 1.53034 * 109.31581 * 305.36387 * 8 7 6 10 10 C 1.50700 * 109.46091 * 181.38489 * 9 8 7 11 11 H 1.07998 * 120.00167 * 359.97241 * 10 9 8 12 12 C 1.37885 * 119.99793 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99921 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99837 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46992 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.46779 * 300.00128 * 14 12 10 17 17 H 1.48493 * 109.47152 * 59.99680 * 14 12 10 18 18 C 1.53044 * 109.52844 * 61.36946 * 9 8 7 19 19 C 1.46923 * 120.63121 * 355.35930 * 6 4 2 20 20 C 1.53000 * 109.47053 * 239.99416 * 2 1 3 21 21 H 1.08997 * 110.21909 * 299.30996 * 20 2 1 22 22 C 1.54481 * 110.24255 * 61.23217 * 20 2 1 23 23 C 1.54628 * 101.76273 * 93.58578 * 22 20 2 24 24 C 1.51278 * 104.19755 * 24.79849 * 23 22 20 25 25 O 1.21285 * 124.94624 * 163.75124 * 24 23 22 26 26 N 1.34625 * 110.14715 * 343.76502 * 24 23 22 27 27 H 1.09004 * 109.46943 * 64.76061 * 1 2 3 28 28 H 1.08992 * 109.47555 * 184.75926 * 1 2 3 29 29 H 1.09004 * 109.46695 * 304.76789 * 1 2 3 30 30 H 1.08996 * 109.58619 * 113.83793 * 7 6 4 31 31 H 1.08999 * 109.69721 * 353.48768 * 7 6 4 32 32 H 1.08997 * 109.49909 * 185.40684 * 8 7 6 33 33 H 1.09001 * 109.52563 * 65.33158 * 8 7 6 34 34 H 1.08998 * 109.45771 * 301.36273 * 9 8 7 35 35 H 0.96995 * 119.99311 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.49470 * 58.58050 * 18 9 8 37 37 H 1.08998 * 109.49745 * 178.68007 * 18 9 8 38 38 H 1.09000 * 109.58851 * 246.15904 * 19 6 4 39 39 H 1.09006 * 109.58838 * 6.43812 * 19 6 4 40 40 H 1.08998 * 110.97227 * 211.69983 * 22 20 2 41 41 H 1.09000 * 110.97040 * 335.43094 * 22 20 2 42 42 H 1.09000 * 110.48982 * 143.47557 * 23 22 20 43 43 H 1.09004 * 110.48674 * 266.11696 * 23 22 20 44 44 H 0.97000 * 124.46992 * 179.53540 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.3257 -1.8859 1.1748 6 7 2.1553 -0.0396 2.3929 7 6 2.5456 -0.7402 3.6240 8 6 1.5083 -0.4421 4.7110 9 6 1.3622 1.0730 4.8696 10 6 0.3674 1.3700 5.9618 11 1 -0.1130 0.5594 6.4897 12 6 0.0704 2.6765 6.2872 13 7 0.6549 3.6635 5.6440 14 14 -1.1623 3.0447 7.6416 15 1 -1.3043 4.5148 7.7955 16 1 -2.4784 2.4552 7.2867 17 1 -0.6848 2.4565 8.9187 18 6 0.8708 1.6801 3.5534 19 6 1.9011 1.4062 2.4533 20 6 2.0400 -0.7214 -1.2492 21 1 1.6935 -1.7548 -1.2552 22 6 1.5605 0.0106 -2.5223 23 6 2.7558 0.9462 -2.8170 24 6 3.9356 0.2567 -2.1680 25 8 5.0996 0.5081 -2.3977 26 7 3.5061 -0.6769 -1.2984 27 1 -0.3633 0.4382 -0.9296 28 1 -0.3634 -1.0240 0.0853 29 1 -0.3633 0.5861 0.8442 30 1 3.5257 -0.3905 3.9484 31 1 2.5834 -1.8138 3.4395 32 1 1.8357 -0.8768 5.6554 33 1 0.5481 -0.8723 4.4261 34 1 2.3281 1.5055 5.1306 35 1 0.4457 4.5826 5.8727 36 1 -0.0831 1.2297 3.2789 37 1 0.7446 2.7560 3.6738 38 1 2.8286 1.9311 2.6823 39 1 1.5143 1.7497 1.4938 40 1 1.4042 -0.6921 -3.3408 41 1 0.6549 0.5841 -2.3248 42 1 2.9120 1.0387 -3.8918 43 1 2.5927 1.9263 -2.3686 44 1 4.0888 -1.2468 -0.7725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329965698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:57 Heat of formation + Delta-G solvation = -106.810960 kcal Electronic energy + Delta-G solvation = -24847.982058 eV Core-core repulsion = 21377.457037 eV Total energy + Delta-G solvation = -3470.525021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.92283 -40.71796 -38.59895 -37.66111 -35.37107 -34.22668 -32.79674 -32.11522 -31.59359 -28.16593 -27.66759 -25.83095 -24.45695 -23.85490 -22.18491 -21.44881 -21.05613 -19.59149 -18.86443 -18.39677 -17.87663 -17.40791 -16.55414 -16.39987 -16.25007 -15.97917 -15.08768 -15.05182 -14.82579 -14.64763 -14.51902 -14.18044 -14.10080 -13.98270 -13.71990 -13.28176 -13.11982 -12.93200 -12.79064 -12.68373 -12.50756 -12.42963 -12.15407 -12.13814 -11.91631 -11.69691 -11.47430 -11.02736 -10.96319 -10.91940 -10.57412 -10.37663 -10.14626 -9.55661 -8.07661 -6.21081 1.43294 1.44427 1.51383 1.55854 1.62623 2.07545 2.40162 2.44538 3.19075 3.29818 3.53824 3.67583 3.78046 4.02447 4.13638 4.18973 4.24678 4.33592 4.34469 4.45875 4.48104 4.55087 4.71252 4.75250 4.80432 4.83689 4.91630 4.95840 4.99322 5.13754 5.17694 5.22400 5.25338 5.40642 5.43779 5.53252 5.65096 5.80121 5.98311 6.07080 6.14511 6.38918 6.52386 6.88149 7.16479 7.20302 7.46902 8.95530 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003747 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.683926 B = 7471.500136 C = 7693.990455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 H 0.106 0.894 4 C 0.513 3.487 5 O -0.585 6.585 6 N -0.603 5.603 7 C 0.116 3.884 8 C -0.111 4.111 9 C 0.044 3.956 10 C -0.536 4.536 11 H 0.047 0.953 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 0.947 3.053 15 H -0.283 1.283 16 H -0.272 1.272 17 H -0.277 1.277 18 C -0.111 4.111 19 C 0.112 3.888 20 C 0.146 3.854 21 H 0.098 0.902 22 C -0.116 4.116 23 C -0.150 4.150 24 C 0.505 3.495 25 O -0.595 6.595 26 N -0.725 5.725 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.046 0.954 34 H -0.003 1.003 35 H 0.262 0.738 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 -4.421 -16.669 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 H 0.124 0.876 4 C 0.303 3.697 5 O -0.467 6.467 6 N -0.334 5.334 7 C -0.006 4.006 8 C -0.150 4.150 9 C 0.026 3.974 10 C -0.574 4.574 11 H 0.065 0.935 12 C -0.179 4.179 13 N -0.551 5.551 14 Si 0.773 3.227 15 H -0.209 1.209 16 H -0.198 1.198 17 H -0.203 1.203 18 C -0.150 4.150 19 C -0.010 4.010 20 C 0.040 3.960 21 H 0.116 0.884 22 C -0.154 4.154 23 C -0.190 4.190 24 C 0.294 3.706 25 O -0.477 6.477 26 N -0.376 5.376 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.163 -4.630 -16.872 17.629 hybrid contribution 0.062 0.010 1.868 1.869 sum -2.101 -4.620 -15.004 15.839 Atomic orbital electron populations 1.21841 0.89775 1.03293 1.04890 1.21871 0.99718 1.01110 0.91485 0.87612 1.21188 0.76557 0.86841 0.85082 1.90616 1.52716 1.17664 1.85672 1.48287 1.66820 1.09856 1.08461 1.21537 0.97513 0.97376 0.84221 1.21830 0.97604 0.98497 0.97029 1.18610 0.94848 0.90554 0.93404 1.21503 1.24976 0.91998 1.18954 0.93480 1.25604 0.97703 0.96286 0.98267 1.69938 1.43792 0.99238 1.42082 0.85783 0.79896 0.76939 0.80036 1.20857 1.19773 1.20272 1.21754 0.95996 1.03049 0.94170 1.21961 0.99257 0.78809 1.00979 1.21664 0.78553 1.01455 0.94295 0.88432 1.22857 0.98602 0.98579 0.95315 1.22428 0.92000 1.00792 1.03748 1.21885 0.90294 0.79413 0.78995 1.90714 1.22404 1.67901 1.66638 1.46601 1.09197 1.38612 1.43228 0.86921 0.92187 0.92388 0.92135 0.90127 0.92195 0.93542 0.98463 0.92894 0.94530 0.90266 0.92627 0.87743 0.87575 0.85573 0.86367 0.86178 0.75958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.94 71.98 0.64 -1.57 16 2 C -0.12 -2.36 1.67 -11.54 -0.02 -2.38 16 3 H 0.11 1.93 6.29 -2.39 -0.02 1.92 16 4 C 0.51 15.25 6.51 87.66 0.57 15.82 16 5 O -0.59 -20.35 15.40 -3.03 -0.05 -20.40 16 6 N -0.60 -19.81 2.97 -818.92 -2.43 -22.24 16 7 C 0.12 4.12 6.42 86.36 0.55 4.67 16 8 C -0.11 -4.46 5.30 30.67 0.16 -4.30 16 9 C 0.04 2.08 2.06 -11.51 -0.02 2.06 16 10 C -0.54 -28.24 8.56 25.60 0.22 -28.02 16 11 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 12 C 0.02 1.08 5.30 84.66 0.45 1.53 16 13 N -0.91 -49.17 11.31 21.45 0.24 -48.93 16 14 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 C -0.11 -4.62 5.15 30.67 0.16 -4.46 16 19 C 0.11 3.65 6.25 86.36 0.54 4.19 16 20 C 0.15 2.45 2.59 45.45 0.12 2.57 16 21 H 0.10 1.73 7.87 -2.39 -0.02 1.72 16 22 C -0.12 -1.00 6.52 31.65 0.21 -0.80 16 23 C -0.15 -1.93 6.86 30.59 0.21 -1.72 16 24 C 0.51 12.23 8.44 87.86 0.74 12.97 16 25 O -0.60 -20.45 18.03 -3.04 -0.05 -20.51 16 26 N -0.72 -16.38 5.51 -439.17 -2.42 -18.80 16 27 H 0.11 0.88 6.03 -2.38 -0.01 0.86 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.13 7.85 -2.38 -0.02 1.11 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.82 7.04 -2.39 -0.02 2.81 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 3.74 6.03 -2.39 -0.01 3.72 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.66 5.15 -2.38 -0.01 2.64 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.13 0.45 5.85 -2.39 -0.01 0.44 16 42 H 0.12 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.40 10.46 8.89 -92.71 -0.82 9.63 16 Total: -1.00 -68.90 343.11 2.03 -66.88 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.18 Total: 19.63 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 4.53 Total: 0.57 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.61 Total: -89.97 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.10 Total: -40.90 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -68.90 2.03 -66.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329965698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.933 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds