Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 110.05658 * 2 1 4 4 C 1.54265 * 110.02993 * 121.41526 * 2 1 3 5 5 C 1.54889 * 104.19463 * 142.89581 * 4 2 1 6 6 C 1.54893 * 102.74675 * 322.05810 * 5 4 2 7 7 C 1.53868 * 110.03288 * 238.58186 * 2 1 3 8 8 H 1.09003 * 110.03545 * 0.05024 * 7 2 1 9 9 N 1.46501 * 110.03216 * 121.43073 * 7 2 1 10 10 C 1.34778 * 119.99902 * 205.27673 * 9 7 2 11 11 O 1.21347 * 120.00199 * 359.72735 * 10 9 7 12 12 C 1.49454 * 119.99943 * 179.72383 * 10 9 7 13 13 O 1.21353 * 119.99804 * 357.62628 * 12 10 9 14 14 N 1.34770 * 120.00156 * 177.61902 * 12 10 9 15 15 C 1.46501 * 120.00203 * 185.10666 * 14 12 10 16 16 C 1.52998 * 109.47203 * 184.40181 * 15 14 12 17 17 C 1.50702 * 115.55160 * 64.93258 * 16 15 14 18 18 H 1.07997 * 120.00278 * 266.87390 * 17 16 15 19 19 C 1.37880 * 119.99776 * 86.87389 * 17 16 15 20 20 N 1.31510 * 119.99632 * 180.91201 * 19 17 16 21 21 Si 1.86798 * 119.99929 * 0.90596 * 19 17 16 22 22 H 1.48500 * 109.47354 * 84.93309 * 21 19 17 23 23 H 1.48506 * 109.46960 * 204.93274 * 21 19 17 24 24 H 1.48508 * 109.47389 * 324.92900 * 21 19 17 25 25 C 1.53004 * 117.50049 * 279.26131 * 16 15 14 26 26 C 1.53003 * 117.49823 * 210.60499 * 16 15 14 27 27 H 1.09001 * 109.46969 * 181.41682 * 1 2 3 28 28 H 1.09001 * 109.46770 * 301.41740 * 1 2 3 29 29 H 1.08993 * 109.47014 * 61.41557 * 1 2 3 30 30 H 1.09004 * 110.49139 * 261.57233 * 4 2 1 31 31 H 1.08997 * 110.48948 * 24.22047 * 4 2 1 32 32 H 1.09000 * 110.75647 * 80.37060 * 5 4 2 33 33 H 1.09002 * 110.75984 * 203.55817 * 5 4 2 34 34 H 1.09006 * 110.48556 * 279.26188 * 6 5 4 35 35 H 1.09003 * 110.48838 * 156.62217 * 6 5 4 36 36 H 0.97004 * 119.99857 * 24.99908 * 9 7 2 37 37 H 0.97007 * 120.00218 * 5.11465 * 14 12 10 38 38 H 1.09000 * 109.47380 * 304.40596 * 15 14 12 39 39 H 1.08999 * 109.46931 * 64.40587 * 15 14 12 40 40 H 0.97008 * 119.99493 * 179.97438 * 20 19 17 41 41 H 1.09008 * 117.49714 * 0.02562 * 25 16 15 42 42 H 1.08996 * 117.49901 * 145.01684 * 25 16 15 43 43 H 1.09000 * 117.49776 * 214.97647 * 26 16 15 44 44 H 1.08997 * 117.49845 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3137 -1.5007 0.7192 6 6 2.8875 -1.9406 -0.7035 7 6 2.0572 -0.7536 -1.2336 8 1 1.2230 -1.1185 -1.8329 9 7 2.9034 0.1311 -2.0384 10 6 3.0556 -0.0987 -3.3577 11 8 2.4958 -1.0413 -3.8780 12 6 3.9140 0.8073 -4.1798 13 8 4.4391 1.7746 -3.6686 14 7 4.1049 0.5501 -5.4889 15 6 5.0339 1.3716 -6.2690 16 6 4.9834 0.9441 -7.7371 17 6 3.6706 1.1807 -8.4383 18 1 2.9290 0.3965 -8.4751 19 6 3.4162 2.3985 -9.0328 20 7 2.2635 2.6111 -9.6291 21 14 4.7088 3.7464 -8.9910 22 1 5.6599 3.5552 -10.1153 23 1 4.0482 5.0700 -9.1212 24 1 5.4460 3.6856 -7.7032 25 6 5.7865 -0.2942 -8.1404 26 6 6.2627 1.0981 -8.5621 27 1 -0.3633 -1.0274 0.0254 28 1 -0.3633 0.5357 0.8770 29 1 -0.3633 0.4917 -0.9024 30 1 2.3297 -0.0536 2.0256 31 1 1.3143 -1.4660 1.5966 32 1 4.1710 -0.8290 0.6752 33 1 3.5345 -2.3660 1.3442 34 1 2.2771 -2.8426 -0.6571 35 1 3.7637 -2.1037 -1.3310 36 1 3.3509 0.8846 -1.6225 37 1 3.6272 -0.1789 -5.9147 38 1 4.7491 2.4205 -6.1859 39 1 6.0458 1.2385 -5.8864 40 1 2.0844 3.4680 -10.0470 41 1 6.3505 -0.8045 -7.3596 42 1 5.3655 -0.9375 -8.9130 43 1 6.1548 1.3701 -9.6121 44 1 7.1401 1.5044 -8.0590 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341898553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -62.208221 kcal Electronic energy + Delta-G solvation = -23850.497924 eV Core-core repulsion = 20381.907023 eV Total energy + Delta-G solvation = -3468.590901 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53343 -39.05794 -37.78945 -37.04925 -34.15068 -33.16639 -32.14088 -31.51064 -28.42006 -27.20309 -25.69227 -25.16371 -23.15764 -21.76728 -21.10722 -20.24231 -19.76778 -19.27843 -17.94964 -16.95094 -16.30953 -16.02637 -15.71955 -15.26755 -14.93878 -14.84924 -14.48516 -13.94498 -13.78051 -13.72252 -13.18725 -13.11477 -12.81007 -12.56902 -12.48414 -12.11466 -11.81830 -11.65818 -11.37240 -11.25145 -11.18068 -11.04441 -10.93505 -10.88830 -10.81032 -10.51035 -10.23685 -9.73141 -9.31026 -9.22769 -9.17919 -8.71343 -8.59610 -8.46780 -6.16125 -4.21395 1.74059 2.64173 3.27269 3.37241 3.40262 3.54321 3.95509 4.18495 4.32154 4.38065 4.55340 4.74360 4.95785 4.99648 5.09395 5.11529 5.15877 5.21523 5.29702 5.38183 5.53188 5.60982 5.61282 5.66203 5.72817 5.86915 5.92043 5.96507 5.97773 6.01492 6.07506 6.10966 6.36486 6.39480 6.40298 6.66337 6.81788 6.94958 7.04644 7.22164 7.64797 7.79110 8.08417 8.39695 8.44113 8.85396 9.45983 10.95242 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.003401 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.954998 B = 8232.072479 C = 8560.734949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.134 4.134 7 C 0.140 3.860 8 H 0.096 0.904 9 N -0.700 5.700 10 C 0.509 3.491 11 O -0.517 6.517 12 C 0.497 3.503 13 O -0.540 6.540 14 N -0.665 5.665 15 C 0.151 3.849 16 C -0.019 4.019 17 C -0.492 4.492 18 H 0.080 0.920 19 C 0.080 3.920 20 N -0.893 5.893 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.260 1.260 25 C -0.177 4.177 26 C -0.192 4.192 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.416 0.584 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.266 0.734 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -6.502 19.968 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.164 4.164 6 C -0.173 4.173 7 C 0.036 3.964 8 H 0.114 0.886 9 N -0.354 5.354 10 C 0.290 3.710 11 O -0.392 6.392 12 C 0.277 3.723 13 O -0.419 6.419 14 N -0.316 5.316 15 C 0.028 3.972 16 C -0.020 4.020 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.123 4.123 20 N -0.530 5.530 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.184 1.184 25 C -0.214 4.214 26 C -0.230 4.230 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.253 0.747 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.209 -6.371 19.805 20.839 hybrid contribution 0.608 0.905 -0.178 1.105 sum 1.817 -5.466 19.627 20.455 Atomic orbital electron populations 1.21863 0.94012 1.02181 1.02175 1.22064 0.96573 0.99887 0.93780 0.90072 1.22461 0.97465 0.99015 0.96761 1.22528 0.97735 1.00053 0.96078 1.22783 1.00333 0.97716 0.96424 1.21812 0.93240 0.89824 0.91535 0.88593 1.45922 1.49650 1.31946 1.07837 1.20402 0.82068 0.85402 0.83110 1.90757 1.46715 1.29976 1.71727 1.19984 0.82712 0.85750 0.83860 1.90711 1.50353 1.28648 1.72204 1.45717 1.43423 1.34756 1.07658 1.21354 0.90059 0.95084 0.90659 1.19609 0.93005 0.98676 0.90688 1.20206 0.98284 1.00303 1.34147 0.90210 1.24984 0.95175 0.98103 0.94079 1.69889 1.22718 1.24434 1.35927 0.86856 0.81848 0.80862 0.79559 1.20158 1.22092 1.18432 1.22862 1.04658 0.90840 1.03071 1.22980 0.98108 1.00918 1.01001 0.92250 0.92285 0.92245 0.91402 0.91147 0.91399 0.91394 0.90559 0.91014 0.75350 0.74685 0.90873 0.93276 0.92426 0.90792 0.89202 0.88945 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 2 C -0.10 -0.84 3.27 -89.50 -0.29 -1.13 16 3 H 0.08 0.66 7.62 -51.93 -0.40 0.26 16 4 C -0.12 -0.80 6.36 -25.07 -0.16 -0.96 16 5 C -0.13 -0.94 6.91 -24.74 -0.17 -1.11 16 6 C -0.13 -1.26 6.54 -25.07 -0.16 -1.42 16 7 C 0.14 1.47 2.90 -66.82 -0.19 1.27 16 8 H 0.10 1.15 7.09 -51.93 -0.37 0.78 16 9 N -0.70 -8.77 5.02 -53.15 -0.27 -9.03 16 10 C 0.51 8.25 7.89 -11.58 -0.09 8.15 16 11 O -0.52 -9.41 16.14 5.50 0.09 -9.32 16 12 C 0.50 9.17 7.88 -11.59 -0.09 9.08 16 13 O -0.54 -10.72 16.47 5.49 0.09 -10.63 16 14 N -0.67 -12.99 5.45 -60.73 -0.33 -13.32 16 15 C 0.15 3.16 5.23 -4.04 -0.02 3.14 16 16 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 17 C -0.49 -13.11 9.29 -34.44 -0.32 -13.43 16 18 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 19 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 20 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 21 Si 0.88 21.32 24.76 -169.99 -4.21 17.11 16 22 H -0.28 -6.47 7.01 56.52 0.40 -6.08 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.26 -6.01 5.99 56.52 0.34 -5.67 16 25 C -0.18 -3.39 9.96 -26.69 -0.27 -3.65 16 26 C -0.19 -3.89 7.59 -26.69 -0.20 -4.09 16 27 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.43 7.84 -51.93 -0.41 0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16 36 H 0.41 4.69 7.79 -40.82 -0.32 4.37 16 37 H 0.42 8.12 7.92 -40.82 -0.32 7.80 16 38 H 0.07 1.68 6.74 -51.93 -0.35 1.33 16 39 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 42 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.09 1.97 7.07 -51.93 -0.37 1.60 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -30.46 356.85 -7.57 -38.03 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.22 Total: 11.00 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.87 Total: -3.34 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.18 Total: -48.22 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.18 Total: -19.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.21 Total: 17.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.46 -7.57 -38.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341898553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.175 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds