Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 110.05658 * 2 1 4 4 C 1.54265 * 110.02993 * 121.41526 * 2 1 3 5 5 C 1.54889 * 104.19463 * 142.89581 * 4 2 1 6 6 C 1.54893 * 102.74675 * 322.05810 * 5 4 2 7 7 C 1.53868 * 110.03288 * 238.58186 * 2 1 3 8 8 H 1.09003 * 110.03545 * 0.05024 * 7 2 1 9 9 N 1.46501 * 110.03216 * 121.43073 * 7 2 1 10 10 C 1.34778 * 119.99902 * 205.27673 * 9 7 2 11 11 O 1.21347 * 120.00199 * 359.72735 * 10 9 7 12 12 C 1.49454 * 119.99943 * 179.72383 * 10 9 7 13 13 O 1.21353 * 119.99804 * 357.62628 * 12 10 9 14 14 N 1.34770 * 120.00156 * 177.61902 * 12 10 9 15 15 C 1.46501 * 120.00203 * 185.10666 * 14 12 10 16 16 C 1.52998 * 109.47203 * 184.40181 * 15 14 12 17 17 C 1.50702 * 115.55160 * 64.93258 * 16 15 14 18 18 H 1.07997 * 120.00278 * 266.87390 * 17 16 15 19 19 C 1.37880 * 119.99776 * 86.87389 * 17 16 15 20 20 N 1.31510 * 119.99632 * 180.91201 * 19 17 16 21 21 Si 1.86798 * 119.99929 * 0.90596 * 19 17 16 22 22 H 1.48500 * 109.47354 * 84.93309 * 21 19 17 23 23 H 1.48506 * 109.46960 * 204.93274 * 21 19 17 24 24 H 1.48508 * 109.47389 * 324.92900 * 21 19 17 25 25 C 1.53004 * 117.50049 * 279.26131 * 16 15 14 26 26 C 1.53003 * 117.49823 * 210.60499 * 16 15 14 27 27 H 1.09001 * 109.46969 * 181.41682 * 1 2 3 28 28 H 1.09001 * 109.46770 * 301.41740 * 1 2 3 29 29 H 1.08993 * 109.47014 * 61.41557 * 1 2 3 30 30 H 1.09004 * 110.49139 * 261.57233 * 4 2 1 31 31 H 1.08997 * 110.48948 * 24.22047 * 4 2 1 32 32 H 1.09000 * 110.75647 * 80.37060 * 5 4 2 33 33 H 1.09002 * 110.75984 * 203.55817 * 5 4 2 34 34 H 1.09006 * 110.48556 * 279.26188 * 6 5 4 35 35 H 1.09003 * 110.48838 * 156.62217 * 6 5 4 36 36 H 0.97004 * 119.99857 * 24.99908 * 9 7 2 37 37 H 0.97007 * 120.00218 * 5.11465 * 14 12 10 38 38 H 1.09000 * 109.47380 * 304.40596 * 15 14 12 39 39 H 1.08999 * 109.46931 * 64.40587 * 15 14 12 40 40 H 0.97008 * 119.99493 * 179.97438 * 20 19 17 41 41 H 1.09008 * 117.49714 * 0.02562 * 25 16 15 42 42 H 1.08996 * 117.49901 * 145.01684 * 25 16 15 43 43 H 1.09000 * 117.49776 * 214.97647 * 26 16 15 44 44 H 1.08997 * 117.49845 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3137 -1.5007 0.7192 6 6 2.8875 -1.9406 -0.7035 7 6 2.0572 -0.7536 -1.2336 8 1 1.2230 -1.1185 -1.8329 9 7 2.9034 0.1311 -2.0384 10 6 3.0556 -0.0987 -3.3577 11 8 2.4958 -1.0413 -3.8780 12 6 3.9140 0.8073 -4.1798 13 8 4.4391 1.7746 -3.6686 14 7 4.1049 0.5501 -5.4889 15 6 5.0339 1.3716 -6.2690 16 6 4.9834 0.9441 -7.7371 17 6 3.6706 1.1807 -8.4383 18 1 2.9290 0.3965 -8.4751 19 6 3.4162 2.3985 -9.0328 20 7 2.2635 2.6111 -9.6291 21 14 4.7088 3.7464 -8.9910 22 1 5.6599 3.5552 -10.1153 23 1 4.0482 5.0700 -9.1212 24 1 5.4460 3.6856 -7.7032 25 6 5.7865 -0.2942 -8.1404 26 6 6.2627 1.0981 -8.5621 27 1 -0.3633 -1.0274 0.0254 28 1 -0.3633 0.5357 0.8770 29 1 -0.3633 0.4917 -0.9024 30 1 2.3297 -0.0536 2.0256 31 1 1.3143 -1.4660 1.5966 32 1 4.1710 -0.8290 0.6752 33 1 3.5345 -2.3660 1.3442 34 1 2.2771 -2.8426 -0.6571 35 1 3.7637 -2.1037 -1.3310 36 1 3.3509 0.8846 -1.6225 37 1 3.6272 -0.1789 -5.9147 38 1 4.7491 2.4205 -6.1859 39 1 6.0458 1.2385 -5.8864 40 1 2.0844 3.4680 -10.0470 41 1 6.3505 -0.8045 -7.3596 42 1 5.3655 -0.9375 -8.9130 43 1 6.1548 1.3701 -9.6121 44 1 7.1401 1.5044 -8.0590 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341898553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -83.545558 kcal Electronic energy + Delta-G solvation = -23851.423180 eV Core-core repulsion = 20381.907023 eV Total energy + Delta-G solvation = -3469.516157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80974 -40.23775 -39.00154 -38.64697 -35.49063 -34.48498 -34.22034 -32.15486 -29.45227 -28.62368 -27.47845 -26.15502 -24.39562 -23.34097 -21.95776 -21.29771 -21.13242 -20.69854 -19.34565 -18.32279 -17.96627 -17.24442 -17.01359 -16.82598 -16.33889 -16.04804 -15.65497 -15.25284 -15.03535 -14.76866 -14.66739 -14.47946 -14.25650 -13.82949 -13.77529 -13.23675 -13.10508 -12.86735 -12.65130 -12.52605 -12.37111 -12.17665 -12.00785 -11.92454 -11.72948 -11.61886 -11.58746 -11.46838 -11.02171 -10.80189 -10.66767 -10.37654 -10.24898 -10.07230 -8.30565 -6.38839 0.34625 1.33542 1.36639 1.40162 1.49833 2.14027 2.36119 2.64566 3.03913 3.21763 3.46006 3.53453 3.63741 3.90569 3.96914 4.27184 4.32363 4.38821 4.43103 4.45763 4.46270 4.57362 4.61695 4.71037 4.72268 4.86877 4.90368 4.94761 4.95978 5.08125 5.11693 5.21804 5.23200 5.28335 5.29521 5.31310 5.43381 5.48795 5.51765 5.67142 5.98270 6.26658 6.40704 6.70470 6.75411 6.96158 7.31952 8.84574 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.003401 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.954998 B = 8232.072479 C = 8560.734949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.133 4.133 7 C 0.133 3.867 8 H 0.079 0.921 9 N -0.680 5.680 10 C 0.512 3.488 11 O -0.543 6.543 12 C 0.497 3.503 13 O -0.553 6.553 14 N -0.672 5.672 15 C 0.159 3.841 16 C -0.046 4.046 17 C -0.485 4.485 18 H 0.037 0.963 19 C 0.022 3.978 20 N -0.947 5.947 21 Si 0.937 3.063 22 H -0.260 1.260 23 H -0.303 1.303 24 H -0.239 1.239 25 C -0.155 4.155 26 C -0.185 4.185 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.265 0.735 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -6.669 22.422 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.102 0.898 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.172 4.172 7 C 0.030 3.970 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.292 3.708 11 O -0.420 6.420 12 C 0.278 3.722 13 O -0.433 6.433 14 N -0.321 5.321 15 C 0.036 3.964 16 C -0.047 4.047 17 C -0.523 4.523 18 H 0.055 0.945 19 C -0.176 4.176 20 N -0.586 5.586 21 Si 0.761 3.239 22 H -0.185 1.185 23 H -0.230 1.230 24 H -0.162 1.162 25 C -0.192 4.192 26 C -0.223 4.223 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.255 0.745 37 H 0.251 0.749 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.266 -6.549 22.307 23.477 hybrid contribution -0.100 0.862 -0.904 1.253 sum 3.166 -5.687 21.403 22.371 Atomic orbital electron populations 1.21864 0.93615 1.02575 1.02110 1.22069 0.96844 0.99853 0.93147 0.89843 1.22447 0.97167 0.99211 0.96152 1.22516 0.98003 1.00645 0.94734 1.22768 0.99506 0.97460 0.97465 1.22070 0.92634 0.90417 0.91919 0.90328 1.45945 1.48797 1.31978 1.06624 1.20047 0.81862 0.84824 0.84033 1.90751 1.47931 1.30951 1.72379 1.20340 0.82504 0.85729 0.83624 1.90693 1.50949 1.29257 1.72409 1.45751 1.43596 1.34662 1.08141 1.21168 0.91477 0.93831 0.89941 1.19447 0.91715 1.02259 0.91282 1.20369 0.99581 0.98826 1.33481 0.94485 1.25819 0.97020 1.00701 0.94018 1.70042 1.25198 1.25143 1.38216 0.85947 0.79680 0.77306 0.80925 1.18481 1.23048 1.16232 1.22898 1.02959 0.90188 1.03170 1.23053 0.97591 1.01468 1.00165 0.91774 0.90760 0.93801 0.89985 0.90135 0.91535 0.90004 0.89835 0.92754 0.74497 0.74913 0.93242 0.90673 0.92614 0.87592 0.89888 0.90193 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.85 71.98 0.64 -1.33 16 2 C -0.10 -1.43 3.27 -10.07 -0.03 -1.47 16 3 H 0.08 1.18 7.62 -2.38 -0.02 1.16 16 4 C -0.11 -1.18 6.36 31.67 0.20 -0.98 16 5 C -0.12 -1.51 6.91 31.89 0.22 -1.29 16 6 C -0.13 -2.34 6.54 31.67 0.21 -2.13 16 7 C 0.13 2.68 2.90 45.71 0.13 2.81 16 8 H 0.08 1.89 7.09 -2.39 -0.02 1.87 16 9 N -0.68 -16.60 5.02 -440.44 -2.21 -18.81 16 10 C 0.51 16.55 7.89 87.27 0.69 17.24 16 11 O -0.54 -20.06 16.14 -3.24 -0.05 -20.11 16 12 C 0.50 18.14 7.88 87.27 0.69 18.82 16 13 O -0.55 -21.41 16.47 -3.26 -0.05 -21.46 16 14 N -0.67 -26.02 5.45 -464.41 -2.53 -28.55 16 15 C 0.16 6.39 5.23 86.38 0.45 6.84 16 16 C -0.05 -1.96 0.85 -52.93 -0.04 -2.01 16 17 C -0.48 -26.44 9.29 25.60 0.24 -26.20 16 18 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 19 C 0.02 1.27 5.47 84.66 0.46 1.73 16 20 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 21 Si 0.94 43.78 24.76 68.60 1.70 45.48 16 22 H -0.26 -11.41 7.01 99.48 0.70 -10.71 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.24 -10.29 5.99 99.48 0.60 -9.70 16 25 C -0.16 -5.55 9.96 30.62 0.30 -5.25 16 26 C -0.19 -6.92 7.59 30.62 0.23 -6.69 16 27 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.72 7.84 -2.39 -0.02 0.71 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.05 1.15 8.04 -2.39 -0.02 1.13 16 36 H 0.42 9.04 7.79 -92.71 -0.72 8.32 16 37 H 0.41 16.40 7.92 -92.70 -0.73 15.67 16 38 H 0.05 2.21 6.74 -2.39 -0.02 2.19 16 39 H 0.08 2.63 8.09 -2.39 -0.02 2.61 16 40 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 41 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.08 3.21 7.07 -2.39 -0.02 3.19 16 44 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -67.62 356.85 0.97 -66.66 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.57 Total: 35.08 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.39 Total: 0.09 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -4.44 Total: -105.74 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.11 Total: -41.58 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.70 Total: 45.48 kcal Total: -67.62 0.97 -66.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341898553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.888 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds