Wall clock time and date at job start Tue Mar 31 2020 07:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47195 * 2 1 4 4 C 1.34775 * 119.99984 * 83.04192 * 3 2 1 5 5 O 1.21350 * 120.00340 * 185.34086 * 4 3 2 6 6 C 1.49458 * 119.99949 * 5.33248 * 4 3 2 7 7 O 1.21349 * 119.99797 * 355.12984 * 6 4 3 8 8 N 1.34779 * 119.99685 * 175.12630 * 6 4 3 9 9 C 1.46924 * 120.63285 * 7.12007 * 8 6 4 10 10 C 1.53187 * 108.77897 * 126.36689 * 9 8 6 11 11 C 1.53033 * 109.31536 * 54.63041 * 10 9 8 12 12 C 1.53046 * 109.54094 * 298.63720 * 11 10 9 13 13 H 1.09000 * 109.49673 * 301.41526 * 12 11 10 14 14 C 1.50699 * 109.49941 * 181.34351 * 12 11 10 15 15 H 1.07996 * 120.00073 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31513 * 119.99927 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99584 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47268 * 60.00300 * 18 16 14 20 20 H 1.48497 * 109.46930 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47280 * 300.00157 * 18 16 14 22 22 C 1.46920 * 120.62640 * 186.83266 * 8 6 4 23 23 C 1.46500 * 120.00247 * 263.03455 * 3 2 1 24 24 C 1.52999 * 117.50029 * 196.65313 * 23 3 2 25 25 C 1.52996 * 117.49998 * 128.02813 * 23 3 2 26 26 H 1.09000 * 109.46861 * 59.99666 * 1 2 3 27 27 H 1.08999 * 109.47053 * 300.00087 * 1 2 3 28 28 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47322 * 120.00066 * 2 1 3 30 30 H 1.08999 * 109.47053 * 239.99913 * 2 1 3 31 31 H 1.09000 * 109.58516 * 246.15225 * 9 8 6 32 32 H 1.09000 * 109.58702 * 6.43276 * 9 8 6 33 33 H 1.08998 * 109.50126 * 174.58711 * 10 9 8 34 34 H 1.09007 * 109.49652 * 294.68066 * 10 9 8 35 35 H 1.08999 * 109.46348 * 58.65852 * 11 10 9 36 36 H 1.09000 * 109.46413 * 178.61543 * 11 10 9 37 37 H 0.97005 * 119.99585 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.59144 * 353.42327 * 22 8 6 39 39 H 1.09003 * 109.58634 * 113.85155 * 22 8 6 40 40 H 1.09002 * 115.54531 * 342.36248 * 23 3 2 41 41 H 1.08994 * 117.49779 * 359.97438 * 24 23 3 42 42 H 1.08998 * 117.49937 * 145.02335 * 24 23 3 43 43 H 1.09002 * 117.50097 * 214.98848 * 25 23 3 44 44 H 1.09001 * 117.49731 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1097 2.0637 1.1586 5 8 2.4211 3.2365 1.1491 6 6 1.8272 1.3760 2.4552 7 8 1.4304 0.2293 2.4599 8 7 2.0134 2.0296 3.6191 9 6 2.3425 3.4615 3.6293 10 6 1.3392 4.1917 4.5275 11 6 1.3304 3.5390 5.9116 12 6 0.8920 2.0781 5.7858 13 1 -0.0993 2.0333 5.3349 14 6 0.8519 1.4455 7.1530 15 1 1.1125 2.0269 8.0250 16 6 0.4814 0.1245 7.2908 17 7 0.1636 -0.5834 6.2290 18 14 0.4310 -0.6594 8.9855 19 1 -0.5343 0.0751 9.8422 20 1 0.0057 -2.0769 8.8627 21 1 1.7821 -0.5999 9.5989 22 6 1.8848 1.3252 4.9020 23 6 2.4076 2.0206 -1.2593 24 6 3.2603 3.2881 -1.1741 25 6 1.7884 3.3821 -1.5813 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.3509 3.6019 4.0184 32 1 2.2838 3.8571 2.6153 33 1 1.6289 5.2384 4.6207 34 1 0.3436 4.1271 4.0884 35 1 2.3319 3.5820 6.3398 36 1 0.6353 4.0721 6.5602 37 1 -0.0967 -1.5128 6.3259 38 1 1.5218 0.3122 4.7279 39 1 2.8552 1.2878 5.3971 40 1 2.5944 1.3429 -2.0924 41 1 3.5313 3.6465 -0.1811 42 1 4.0084 3.4446 -1.9512 43 1 1.5682 3.6004 -2.6263 44 1 1.0911 3.8020 -0.8563 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350179096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:46 Heat of formation + Delta-G solvation = -6.409920 kcal Electronic energy + Delta-G solvation = -25303.188982 eV Core-core repulsion = 21837.017677 eV Total energy + Delta-G solvation = -3466.171305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96407 -38.79476 -37.18518 -36.46644 -34.61545 -33.23950 -31.73208 -30.00389 -29.72954 -26.14926 -25.03219 -23.87731 -23.00402 -22.42553 -21.82260 -21.32469 -19.42804 -18.45941 -17.00802 -16.35064 -16.30921 -15.70224 -15.63330 -15.45678 -14.55667 -14.31270 -13.88114 -13.79025 -13.69735 -13.26614 -13.16971 -12.85885 -12.65349 -12.55945 -12.19710 -11.86081 -11.77846 -11.56938 -11.09572 -11.07672 -10.99542 -10.90881 -10.61726 -10.47472 -10.39085 -10.25291 -9.92670 -9.68788 -9.14920 -9.10023 -8.62721 -8.46274 -8.16596 -7.80398 -6.01724 -4.10265 1.74736 2.55576 3.31083 3.36702 3.38450 3.54284 3.73737 3.91954 4.41067 4.54217 4.76311 4.85327 4.97938 5.13132 5.28308 5.40303 5.46972 5.62776 5.65651 5.66947 5.70065 5.81236 5.91997 6.00935 6.13044 6.21329 6.26472 6.38367 6.41501 6.52527 6.61977 6.67707 6.74695 6.87405 6.99448 7.05441 7.18674 7.23919 7.59334 7.82443 7.93851 7.97578 8.17822 8.35784 8.59775 8.93499 9.55205 11.03461 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022797 B = 0.004664 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.914719 B = 6001.938947 C = 6922.485116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 N -0.557 5.557 4 C 0.511 3.489 5 O -0.513 6.513 6 C 0.493 3.507 7 O -0.513 6.513 8 N -0.566 5.566 9 C 0.053 3.947 10 C -0.130 4.130 11 C -0.113 4.113 12 C 0.041 3.959 13 H 0.029 0.971 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.107 3.893 23 C 0.065 3.935 24 C -0.191 4.191 25 C -0.185 4.185 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.143 0.857 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.125 0.875 39 H 0.047 0.953 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 4.711 -14.977 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.031 4.031 3 N -0.288 5.288 4 C 0.296 3.704 5 O -0.393 6.393 6 C 0.274 3.726 7 O -0.390 6.390 8 N -0.298 5.298 9 C -0.069 4.069 10 C -0.168 4.168 11 C -0.151 4.151 12 C 0.022 3.978 13 H 0.047 0.953 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.012 4.012 23 C -0.039 4.039 24 C -0.229 4.229 25 C -0.224 4.224 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.065 0.935 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.344 4.478 -15.002 16.247 hybrid contribution -0.113 -0.466 0.922 1.039 sum 4.231 4.012 -14.080 15.239 Atomic orbital electron populations 1.22052 0.95290 1.02454 1.01820 1.22285 0.95399 0.80412 1.04974 1.47367 1.61803 1.14925 1.04685 1.20836 0.77466 0.86423 0.85630 1.90167 1.47984 1.15927 1.85186 1.19767 0.81065 0.86927 0.84826 1.90646 1.45052 1.17401 1.85948 1.48456 1.64425 1.10587 1.06295 1.23073 0.97687 0.80245 1.05888 1.21907 0.99217 0.98319 0.97404 1.21662 1.00445 0.98670 0.94301 1.18874 0.94637 0.89309 0.94957 0.95300 1.21056 1.46569 0.96114 0.92151 0.92349 1.25049 0.94809 0.97399 0.96725 1.69869 1.44841 1.08969 1.28207 0.86640 0.78472 0.78282 0.84515 1.20270 1.21247 1.20245 1.22397 0.99234 1.00475 0.79133 1.21824 1.05250 0.89411 0.87456 1.23822 0.93731 0.99627 1.05679 1.23241 0.97294 0.99959 1.01881 0.93456 0.91823 0.91388 0.85893 0.91223 0.92624 0.84077 0.92230 0.92508 0.93251 0.93130 0.92608 0.85733 0.93452 0.85218 0.84549 0.89209 0.88683 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.77 37.16 0.36 -1.74 16 2 C 0.09 1.18 5.76 -4.04 -0.02 1.16 16 3 N -0.56 -7.76 2.86 -166.61 -0.48 -8.24 16 4 C 0.51 8.51 7.40 -11.58 -0.09 8.42 16 5 O -0.51 -8.47 8.75 5.50 0.05 -8.43 16 6 C 0.49 9.78 7.54 -11.58 -0.09 9.69 16 7 O -0.51 -11.08 11.40 5.50 0.06 -11.02 16 8 N -0.57 -11.71 2.98 -173.54 -0.52 -12.23 16 9 C 0.05 0.94 6.16 -3.71 -0.02 0.92 16 10 C -0.13 -2.32 6.08 -26.62 -0.16 -2.48 16 11 C -0.11 -2.34 5.11 -26.69 -0.14 -2.48 16 12 C 0.04 1.03 2.24 -91.87 -0.21 0.82 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.52 -14.07 8.57 -34.44 -0.29 -14.36 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 17 N -0.88 -25.16 11.39 55.43 0.63 -24.53 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.11 2.58 5.39 -3.93 -0.02 2.56 16 23 C 0.06 0.73 6.62 -67.93 -0.45 0.28 16 24 C -0.19 -2.15 9.63 -26.73 -0.26 -2.41 16 25 C -0.19 -2.03 9.87 -26.73 -0.26 -2.29 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.05 7.18 -51.93 -0.37 0.67 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.12 1.92 5.28 -51.98 -0.27 1.65 16 30 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.14 2.44 3.91 -55.29 -0.22 2.22 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.12 3.40 5.11 -51.93 -0.27 3.14 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.13 1.11 8.03 -51.93 -0.42 0.69 16 41 H 0.14 1.87 5.21 -50.82 -0.26 1.61 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.10 1.28 7.59 -51.93 -0.39 0.89 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -28.86 339.55 -8.71 -37.57 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.81 Total: 5.98 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.74 Total: -0.27 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.36 Total: -44.99 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.11 Total: -19.44 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.86 -8.71 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350179096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.157 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds