Wall clock time and date at job start Tue Mar 31 2020 07:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47195 * 2 1 4 4 C 1.34775 * 119.99984 * 83.04192 * 3 2 1 5 5 O 1.21350 * 120.00340 * 185.34086 * 4 3 2 6 6 C 1.49458 * 119.99949 * 5.33248 * 4 3 2 7 7 O 1.21349 * 119.99797 * 355.12984 * 6 4 3 8 8 N 1.34779 * 119.99685 * 175.12630 * 6 4 3 9 9 C 1.46924 * 120.63285 * 7.12007 * 8 6 4 10 10 C 1.53187 * 108.77897 * 126.36689 * 9 8 6 11 11 C 1.53033 * 109.31536 * 54.63041 * 10 9 8 12 12 C 1.53046 * 109.54094 * 298.63720 * 11 10 9 13 13 H 1.09000 * 109.49673 * 301.41526 * 12 11 10 14 14 C 1.50699 * 109.49941 * 181.34351 * 12 11 10 15 15 H 1.07996 * 120.00073 * 0.02562 * 14 12 11 16 16 C 1.37881 * 119.99686 * 179.97438 * 14 12 11 17 17 N 1.31513 * 119.99927 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99584 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47268 * 60.00300 * 18 16 14 20 20 H 1.48497 * 109.46930 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47280 * 300.00157 * 18 16 14 22 22 C 1.46920 * 120.62640 * 186.83266 * 8 6 4 23 23 C 1.46500 * 120.00247 * 263.03455 * 3 2 1 24 24 C 1.52999 * 117.50029 * 196.65313 * 23 3 2 25 25 C 1.52996 * 117.49998 * 128.02813 * 23 3 2 26 26 H 1.09000 * 109.46861 * 59.99666 * 1 2 3 27 27 H 1.08999 * 109.47053 * 300.00087 * 1 2 3 28 28 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47322 * 120.00066 * 2 1 3 30 30 H 1.08999 * 109.47053 * 239.99913 * 2 1 3 31 31 H 1.09000 * 109.58516 * 246.15225 * 9 8 6 32 32 H 1.09000 * 109.58702 * 6.43276 * 9 8 6 33 33 H 1.08998 * 109.50126 * 174.58711 * 10 9 8 34 34 H 1.09007 * 109.49652 * 294.68066 * 10 9 8 35 35 H 1.08999 * 109.46348 * 58.65852 * 11 10 9 36 36 H 1.09000 * 109.46413 * 178.61543 * 11 10 9 37 37 H 0.97005 * 119.99585 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.59144 * 353.42327 * 22 8 6 39 39 H 1.09003 * 109.58634 * 113.85155 * 22 8 6 40 40 H 1.09002 * 115.54531 * 342.36248 * 23 3 2 41 41 H 1.08994 * 117.49779 * 359.97438 * 24 23 3 42 42 H 1.08998 * 117.49937 * 145.02335 * 24 23 3 43 43 H 1.09002 * 117.50097 * 214.98848 * 25 23 3 44 44 H 1.09001 * 117.49731 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1097 2.0637 1.1586 5 8 2.4211 3.2365 1.1491 6 6 1.8272 1.3760 2.4552 7 8 1.4304 0.2293 2.4599 8 7 2.0134 2.0296 3.6191 9 6 2.3425 3.4615 3.6293 10 6 1.3392 4.1917 4.5275 11 6 1.3304 3.5390 5.9116 12 6 0.8920 2.0781 5.7858 13 1 -0.0993 2.0333 5.3349 14 6 0.8519 1.4455 7.1530 15 1 1.1125 2.0269 8.0250 16 6 0.4814 0.1245 7.2908 17 7 0.1636 -0.5834 6.2290 18 14 0.4310 -0.6594 8.9855 19 1 -0.5343 0.0751 9.8422 20 1 0.0057 -2.0769 8.8627 21 1 1.7821 -0.5999 9.5989 22 6 1.8848 1.3252 4.9020 23 6 2.4076 2.0206 -1.2593 24 6 3.2603 3.2881 -1.1741 25 6 1.7884 3.3821 -1.5813 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.3509 3.6019 4.0184 32 1 2.2838 3.8571 2.6153 33 1 1.6289 5.2384 4.6207 34 1 0.3436 4.1271 4.0884 35 1 2.3319 3.5820 6.3398 36 1 0.6353 4.0721 6.5602 37 1 -0.0967 -1.5128 6.3259 38 1 1.5218 0.3122 4.7279 39 1 2.8552 1.2878 5.3971 40 1 2.5944 1.3429 -2.0924 41 1 3.5313 3.6465 -0.1811 42 1 4.0084 3.4446 -1.9512 43 1 1.5682 3.6004 -2.6263 44 1 1.0911 3.8020 -0.8563 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350179096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:46 Heat of formation + Delta-G solvation = -23.002525 kcal Electronic energy + Delta-G solvation = -25303.908491 eV Core-core repulsion = 21837.017677 eV Total energy + Delta-G solvation = -3466.890814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29494 -40.24298 -38.72483 -37.72071 -35.72628 -35.13857 -33.45263 -31.60398 -31.08652 -27.76402 -26.88634 -25.27389 -24.12955 -23.50869 -23.27046 -22.67221 -21.00328 -19.95800 -18.64249 -17.96466 -17.68145 -17.10994 -17.02005 -16.69637 -16.48494 -15.58946 -15.42489 -15.21641 -14.92274 -14.68717 -14.61345 -14.40139 -14.20590 -13.90133 -13.76588 -13.45098 -12.94164 -12.88385 -12.84559 -12.52928 -12.29794 -12.23863 -12.21796 -11.99919 -11.91088 -11.68917 -11.39106 -11.17721 -11.04526 -10.92249 -10.54128 -9.84418 -9.56419 -9.39843 -8.11392 -6.28616 0.33851 1.28396 1.42185 1.43799 1.51572 2.11261 2.36762 2.43784 2.97973 3.13382 3.18539 3.80944 3.97908 4.11032 4.14942 4.16858 4.21976 4.33255 4.39511 4.45946 4.57514 4.63052 4.73526 4.80178 4.83991 4.89170 4.91058 5.02460 5.05761 5.16385 5.22035 5.23653 5.28909 5.30273 5.40639 5.52128 5.57203 5.70860 5.84633 5.93640 5.98139 6.28515 6.42822 6.73032 6.82846 7.03414 7.41137 8.92057 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022797 B = 0.004664 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.914719 B = 6001.938947 C = 6922.485116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 N -0.549 5.549 4 C 0.513 3.487 5 O -0.513 6.513 6 C 0.481 3.519 7 O -0.538 6.538 8 N -0.577 5.577 9 C 0.054 3.946 10 C -0.123 4.123 11 C -0.107 4.107 12 C 0.040 3.960 13 H -0.014 1.014 14 C -0.539 4.539 15 H 0.061 0.939 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.122 3.878 23 C 0.058 3.942 24 C -0.192 4.192 25 C -0.181 4.181 26 H 0.067 0.933 27 H 0.021 0.979 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.169 0.831 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 5.642 -16.797 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.278 5.278 4 C 0.297 3.703 5 O -0.393 6.393 6 C 0.264 3.736 7 O -0.417 6.417 8 N -0.308 5.308 9 C -0.067 4.067 10 C -0.161 4.161 11 C -0.144 4.144 12 C 0.021 3.979 13 H 0.004 0.996 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.551 5.551 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.193 1.193 22 C 0.000 4.000 23 C -0.045 4.045 24 C -0.230 4.230 25 C -0.219 4.219 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.186 0.814 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.433 5.436 -16.851 18.521 hybrid contribution -0.468 -0.765 1.416 1.677 sum 4.964 4.671 -15.435 16.873 Atomic orbital electron populations 1.21987 0.95531 1.02787 1.00680 1.22275 0.95115 0.80061 1.05644 1.47427 1.60477 1.15096 1.04813 1.20122 0.78519 0.86410 0.85266 1.90166 1.48503 1.15611 1.85040 1.20516 0.80193 0.86850 0.86019 1.90647 1.45709 1.18646 1.86720 1.48472 1.65054 1.11734 1.05565 1.23275 0.98256 0.78402 1.06724 1.21874 0.98780 1.00173 0.95267 1.21555 1.00592 0.95906 0.96377 1.18805 0.92767 0.92348 0.93999 0.99560 1.21447 1.46471 0.96593 0.93226 0.92056 1.25862 0.94413 0.97983 1.00371 1.70052 1.45693 1.08985 1.30331 0.85603 0.78854 0.77169 0.79995 1.19544 1.21175 1.19262 1.21833 0.98267 0.98998 0.80871 1.22312 1.05381 0.90197 0.86611 1.23775 0.94585 0.99420 1.05175 1.23257 0.96524 0.99282 1.02840 0.91371 0.95954 0.90432 0.88851 0.86845 0.91357 0.82980 0.88376 0.93711 0.92478 0.92929 0.92926 0.89378 0.93980 0.81375 0.87216 0.86399 0.85719 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.77 71.98 0.70 -3.26 16 2 C 0.09 2.25 5.76 86.38 0.50 2.74 16 3 N -0.55 -14.48 2.86 -799.40 -2.28 -16.77 16 4 C 0.51 17.05 7.40 87.27 0.65 17.70 16 5 O -0.51 -16.63 8.75 -3.25 -0.03 -16.66 16 6 C 0.48 19.90 7.54 87.27 0.66 20.56 16 7 O -0.54 -24.71 11.40 -3.24 -0.04 -24.75 16 8 N -0.58 -24.71 2.98 -821.31 -2.45 -27.16 16 9 C 0.05 1.90 6.16 86.36 0.53 2.43 16 10 C -0.12 -4.28 6.08 30.67 0.19 -4.10 16 11 C -0.11 -4.42 5.11 30.62 0.16 -4.27 16 12 C 0.04 2.08 2.24 -11.60 -0.03 2.05 16 13 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 14 C -0.54 -29.97 8.57 25.60 0.22 -29.75 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 16 C 0.01 0.76 5.31 84.66 0.45 1.21 16 17 N -0.91 -54.48 11.39 21.45 0.24 -54.24 16 18 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C 0.12 6.17 5.39 86.22 0.46 6.63 16 23 C 0.06 1.09 6.62 44.99 0.30 1.39 16 24 C -0.19 -3.75 9.63 30.59 0.29 -3.45 16 25 C -0.18 -3.42 9.87 30.59 0.30 -3.11 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.02 0.75 7.18 -2.39 -0.02 0.73 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 2.98 5.28 -3.18 -0.02 2.96 16 30 H 0.11 1.87 7.94 -2.39 -0.02 1.85 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.15 5.13 3.91 -74.31 -0.29 4.84 16 33 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 38 H 0.09 5.14 5.11 -2.39 -0.01 5.13 16 39 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.17 1.96 8.03 -2.39 -0.02 1.94 16 41 H 0.11 2.82 5.21 -3.48 -0.02 2.81 16 42 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.77 7.59 -2.39 -0.02 1.76 16 Total: -1.00 -66.91 339.55 3.56 -63.35 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.70 Total: 23.47 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.38 Total: 6.76 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.49 Total: -98.16 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.07 Total: -41.41 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.91 3.56 -63.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350179096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.347 kcal (2) G-P(sol) polarization free energy of solvation -66.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds