Wall clock time and date at job start Tue Mar 31 2020 07:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.46772 * 2 1 4 4 C 1.34778 * 119.99820 * 86.32272 * 3 2 1 5 5 O 1.21356 * 120.00037 * 176.90431 * 4 3 2 6 6 C 1.49452 * 120.00060 * 357.18788 * 4 3 2 7 7 O 1.21352 * 119.99865 * 274.88523 * 6 4 3 8 8 N 1.34776 * 120.00065 * 94.88206 * 6 4 3 9 9 C 1.46923 * 120.63171 * 4.77436 * 8 6 4 10 10 C 1.52765 * 109.00579 * 233.58080 * 9 8 6 11 11 C 1.53042 * 109.38329 * 305.58645 * 10 9 8 12 12 C 1.53044 * 109.53853 * 61.23928 * 11 10 9 13 13 H 1.09000 * 109.49497 * 58.58731 * 12 11 10 14 14 C 1.50696 * 109.49703 * 178.68528 * 12 11 10 15 15 H 1.08000 * 120.00080 * 359.83935 * 14 12 11 16 16 C 1.37876 * 119.99852 * 179.84008 * 14 12 11 17 17 N 1.31508 * 120.00078 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00062 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47190 * 60.00102 * 18 16 14 20 20 H 1.48504 * 109.47361 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47372 * 300.00248 * 18 16 14 22 22 C 1.46928 * 120.62846 * 185.04784 * 8 6 4 23 23 C 1.46500 * 120.00498 * 266.31971 * 3 2 1 24 24 C 1.52994 * 117.49994 * 196.87724 * 23 3 2 25 25 C 1.52994 * 117.49883 * 128.21490 * 23 3 2 26 26 H 1.09004 * 109.46817 * 299.99501 * 1 2 3 27 27 H 1.08996 * 109.46876 * 59.99824 * 1 2 3 28 28 H 1.09001 * 109.46625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46817 * 240.00499 * 2 1 3 30 30 H 1.08996 * 109.46876 * 120.00176 * 2 1 3 31 31 H 1.08998 * 109.58761 * 353.41030 * 9 8 6 32 32 H 1.09004 * 109.58934 * 113.84292 * 9 8 6 33 33 H 1.09004 * 109.56497 * 185.55476 * 10 9 8 34 34 H 1.08998 * 109.38530 * 65.51206 * 10 9 8 35 35 H 1.09001 * 109.46233 * 301.22245 * 11 10 9 36 36 H 1.08990 * 109.46181 * 181.26115 * 11 10 9 37 37 H 0.97007 * 120.00293 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.58813 * 246.15933 * 22 8 6 39 39 H 1.09005 * 109.58808 * 6.43840 * 22 8 6 40 40 H 1.09001 * 115.54857 * 342.55078 * 23 3 2 41 41 H 1.08994 * 117.50223 * 0.02562 * 24 23 3 42 42 H 1.09003 * 117.49309 * 145.02183 * 24 23 3 43 43 H 1.08999 * 117.50185 * 214.98091 * 25 23 3 44 44 H 1.09003 * 117.50078 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1723 2.0415 1.1648 5 8 2.6297 3.1656 1.1693 6 6 1.7858 1.3870 2.4516 7 8 0.6360 1.4372 2.8364 8 7 2.7141 0.7409 3.1845 9 6 4.1282 0.7595 2.7864 10 6 4.6386 -0.6775 2.6960 11 6 4.3672 -1.3971 4.0192 12 6 2.8600 -1.4336 4.2822 13 1 2.3594 -1.9436 3.4591 14 6 2.5917 -2.1705 5.5690 15 1 3.4136 -2.5750 6.1411 16 6 1.2970 -2.3282 6.0160 17 7 0.2963 -1.8352 5.3197 18 14 0.9643 -3.2423 7.6108 19 1 1.6485 -2.5482 8.7312 20 1 -0.4980 -3.2734 7.8677 21 1 1.4779 -4.6314 7.5016 22 6 2.3303 -0.0005 4.3936 23 6 2.3393 2.0448 -1.2660 24 6 3.2002 3.3080 -1.2032 25 6 1.7077 3.4138 -1.5260 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.2279 1.2429 1.8146 32 1 4.7100 1.3049 3.5296 33 1 5.7105 -0.6724 2.4979 34 1 4.1217 -1.1949 1.8879 35 1 4.8646 -0.8653 4.8304 36 1 4.7510 -2.4157 3.9640 37 1 -0.6147 -1.9458 5.6343 38 1 2.7624 0.4816 5.2705 39 1 1.2440 -0.0161 4.4833 40 1 2.4774 1.3836 -2.1216 41 1 3.5283 3.6451 -0.2200 42 1 3.9045 3.4779 -2.0176 43 1 1.4307 3.6536 -2.5526 44 1 1.0530 3.8207 -0.7553 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350179098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:49 Heat of formation + Delta-G solvation = -30.954357 kcal Electronic energy + Delta-G solvation = -25501.520685 eV Core-core repulsion = 22034.285053 eV Total energy + Delta-G solvation = -3467.235632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87392 -38.89662 -36.89428 -36.44186 -34.86806 -33.44133 -31.89683 -30.06017 -29.86928 -26.24478 -25.11473 -23.92543 -23.02586 -22.41664 -21.95041 -21.42871 -19.40616 -18.24331 -17.38334 -16.47541 -16.44388 -16.14683 -15.46725 -14.90879 -14.56580 -14.18568 -14.00519 -13.83002 -13.67318 -13.57587 -13.31593 -12.87400 -12.71700 -12.67966 -12.23109 -12.01448 -11.77847 -11.63827 -11.14753 -11.07970 -11.03430 -10.95879 -10.60937 -10.53234 -10.39793 -10.39097 -10.31508 -10.00462 -9.22896 -9.21384 -8.78956 -8.53717 -8.49910 -7.94475 -6.07421 -4.15848 2.30886 2.42010 3.06399 3.28466 3.35034 3.36012 3.60785 3.89944 4.36827 4.43370 4.78527 4.84174 4.99081 5.05068 5.20896 5.24059 5.31926 5.37962 5.41284 5.49406 5.60034 5.68311 5.84999 5.92157 5.94916 6.01403 6.08026 6.22162 6.26542 6.42920 6.49071 6.54948 6.67927 6.75506 6.86602 6.98852 7.09006 7.16632 7.50664 7.74770 7.86448 7.98147 8.02383 8.27384 8.48647 8.87652 9.50369 10.98165 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.004745 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.356074 B = 5899.624852 C = 6331.144678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 N -0.570 5.570 4 C 0.520 3.480 5 O -0.518 6.518 6 C 0.507 3.493 7 O -0.509 6.509 8 N -0.587 5.587 9 C 0.107 3.893 10 C -0.132 4.132 11 C -0.112 4.112 12 C 0.043 3.957 13 H 0.030 0.970 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.882 5.882 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.110 3.890 23 C 0.068 3.932 24 C -0.196 4.196 25 C -0.189 4.189 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.265 0.735 38 H 0.048 0.952 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 4.181 -13.449 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.302 5.302 4 C 0.305 3.695 5 O -0.395 6.395 6 C 0.288 3.712 7 O -0.384 6.384 8 N -0.321 5.321 9 C -0.016 4.016 10 C -0.170 4.170 11 C -0.150 4.150 12 C 0.024 3.976 13 H 0.048 0.952 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.519 5.519 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.009 4.009 23 C -0.036 4.036 24 C -0.233 4.233 25 C -0.227 4.227 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.209 4.790 -13.199 14.976 hybrid contribution -0.277 -0.509 0.730 0.932 sum 4.932 4.281 -12.469 14.076 Atomic orbital electron populations 1.22261 0.94799 1.03004 1.03306 1.21737 0.95656 0.80571 1.03859 1.47432 1.63884 1.14422 1.04488 1.20821 0.77169 0.86437 0.85118 1.90531 1.43693 1.18867 1.86373 1.19996 0.86437 0.79781 0.85032 1.90804 1.18458 1.58235 1.70883 1.48595 1.06651 1.49049 1.27795 1.21625 0.82194 0.97980 0.99816 1.21880 0.99864 0.95110 1.00188 1.21649 1.00063 0.98905 0.94345 1.18962 0.89484 0.91513 0.97685 0.95210 1.21023 0.92354 1.35608 1.07059 0.92271 1.25036 0.96314 0.95357 0.97172 1.69844 0.99315 1.44510 1.38214 0.86635 0.77177 0.80288 0.83786 1.20207 1.21233 1.20250 1.22497 1.05358 0.91758 0.81322 1.21739 1.05814 0.89036 0.86991 1.24056 0.93594 0.99508 1.06154 1.23257 0.97117 1.00037 1.02337 0.90669 0.92589 0.91091 0.89669 0.89546 0.91504 0.91243 0.91837 0.92163 0.92959 0.92726 0.92493 0.93384 0.85741 0.85154 0.83902 0.89293 0.88546 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 10.19 37.16 0.38 -2.03 16 2 C 0.10 1.37 5.92 -4.04 -0.02 1.34 16 3 N -0.57 -8.14 2.85 -166.61 -0.47 -8.61 16 4 C 0.52 9.21 5.22 -11.58 -0.06 9.15 16 5 O -0.52 -9.72 12.94 5.49 0.07 -9.65 16 6 C 0.51 10.44 5.56 -11.58 -0.06 10.38 16 7 O -0.51 -12.25 15.17 5.49 0.08 -12.17 16 8 N -0.59 -11.68 2.98 -173.53 -0.52 -12.20 16 9 C 0.11 1.73 6.33 -3.93 -0.02 1.71 16 10 C -0.13 -2.02 6.06 -26.83 -0.16 -2.18 16 11 C -0.11 -2.09 5.11 -26.69 -0.14 -2.23 16 12 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 13 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 14 C -0.52 -13.50 8.56 -34.44 -0.29 -13.79 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.88 -24.55 11.39 55.43 0.63 -23.92 16 18 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 C 0.11 2.57 5.39 -3.71 -0.02 2.55 16 23 C 0.07 0.79 6.62 -67.94 -0.45 0.35 16 24 C -0.20 -2.34 9.64 -26.70 -0.26 -2.59 16 25 C -0.19 -2.22 9.90 -26.70 -0.26 -2.49 16 26 H 0.07 1.31 6.56 -51.93 -0.34 0.97 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.83 7.98 -51.93 -0.41 0.42 16 30 H 0.09 1.32 7.09 -51.93 -0.37 0.95 16 31 H 0.07 1.00 6.29 -51.93 -0.33 0.67 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.12 3.37 5.16 -51.93 -0.27 3.11 16 40 H 0.13 1.13 8.06 -51.93 -0.42 0.71 16 41 H 0.14 2.13 4.96 -53.39 -0.26 1.86 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.36 7.83 -51.93 -0.41 0.96 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -29.72 347.78 -8.67 -38.39 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.00 Total: 4.77 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.68 Total: 2.55 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.36 Total: -44.73 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.15 Total: -21.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.72 -8.67 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350179098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.434 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds