Wall clock time and date at job start Tue Mar 31 2020 07:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.46772 * 2 1 4 4 C 1.34778 * 119.99820 * 86.32272 * 3 2 1 5 5 O 1.21356 * 120.00037 * 176.90431 * 4 3 2 6 6 C 1.49452 * 120.00060 * 357.18788 * 4 3 2 7 7 O 1.21352 * 119.99865 * 274.88523 * 6 4 3 8 8 N 1.34776 * 120.00065 * 94.88206 * 6 4 3 9 9 C 1.46923 * 120.63171 * 4.77436 * 8 6 4 10 10 C 1.52765 * 109.00579 * 233.58080 * 9 8 6 11 11 C 1.53042 * 109.38329 * 305.58645 * 10 9 8 12 12 C 1.53044 * 109.53853 * 61.23928 * 11 10 9 13 13 H 1.09000 * 109.49497 * 58.58731 * 12 11 10 14 14 C 1.50696 * 109.49703 * 178.68528 * 12 11 10 15 15 H 1.08000 * 120.00080 * 359.83935 * 14 12 11 16 16 C 1.37876 * 119.99852 * 179.84008 * 14 12 11 17 17 N 1.31508 * 120.00078 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00062 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47190 * 60.00102 * 18 16 14 20 20 H 1.48504 * 109.47361 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47372 * 300.00248 * 18 16 14 22 22 C 1.46928 * 120.62846 * 185.04784 * 8 6 4 23 23 C 1.46500 * 120.00498 * 266.31971 * 3 2 1 24 24 C 1.52994 * 117.49994 * 196.87724 * 23 3 2 25 25 C 1.52994 * 117.49883 * 128.21490 * 23 3 2 26 26 H 1.09004 * 109.46817 * 299.99501 * 1 2 3 27 27 H 1.08996 * 109.46876 * 59.99824 * 1 2 3 28 28 H 1.09001 * 109.46625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46817 * 240.00499 * 2 1 3 30 30 H 1.08996 * 109.46876 * 120.00176 * 2 1 3 31 31 H 1.08998 * 109.58761 * 353.41030 * 9 8 6 32 32 H 1.09004 * 109.58934 * 113.84292 * 9 8 6 33 33 H 1.09004 * 109.56497 * 185.55476 * 10 9 8 34 34 H 1.08998 * 109.38530 * 65.51206 * 10 9 8 35 35 H 1.09001 * 109.46233 * 301.22245 * 11 10 9 36 36 H 1.08990 * 109.46181 * 181.26115 * 11 10 9 37 37 H 0.97007 * 120.00293 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.58813 * 246.15933 * 22 8 6 39 39 H 1.09005 * 109.58808 * 6.43840 * 22 8 6 40 40 H 1.09001 * 115.54857 * 342.55078 * 23 3 2 41 41 H 1.08994 * 117.50223 * 0.02562 * 24 23 3 42 42 H 1.09003 * 117.49309 * 145.02183 * 24 23 3 43 43 H 1.08999 * 117.50185 * 214.98091 * 25 23 3 44 44 H 1.09003 * 117.50078 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1723 2.0415 1.1648 5 8 2.6297 3.1656 1.1693 6 6 1.7858 1.3870 2.4516 7 8 0.6360 1.4372 2.8364 8 7 2.7141 0.7409 3.1845 9 6 4.1282 0.7595 2.7864 10 6 4.6386 -0.6775 2.6960 11 6 4.3672 -1.3971 4.0192 12 6 2.8600 -1.4336 4.2822 13 1 2.3594 -1.9436 3.4591 14 6 2.5917 -2.1705 5.5690 15 1 3.4136 -2.5750 6.1411 16 6 1.2970 -2.3282 6.0160 17 7 0.2963 -1.8352 5.3197 18 14 0.9643 -3.2423 7.6108 19 1 1.6485 -2.5482 8.7312 20 1 -0.4980 -3.2734 7.8677 21 1 1.4779 -4.6314 7.5016 22 6 2.3303 -0.0005 4.3936 23 6 2.3393 2.0448 -1.2660 24 6 3.2002 3.3080 -1.2032 25 6 1.7077 3.4138 -1.5260 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 4.2279 1.2429 1.8146 32 1 4.7100 1.3049 3.5296 33 1 5.7105 -0.6724 2.4979 34 1 4.1217 -1.1949 1.8879 35 1 4.8646 -0.8653 4.8304 36 1 4.7510 -2.4157 3.9640 37 1 -0.6147 -1.9458 5.6343 38 1 2.7624 0.4816 5.2705 39 1 1.2440 -0.0161 4.4833 40 1 2.4774 1.3836 -2.1216 41 1 3.5283 3.6451 -0.2200 42 1 3.9045 3.4779 -2.0176 43 1 1.4307 3.6536 -2.5526 44 1 1.0530 3.8207 -0.7553 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350179098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:48 Heat of formation + Delta-G solvation = -48.973692 kcal Electronic energy + Delta-G solvation = -25502.302062 eV Core-core repulsion = 22034.285053 eV Total energy + Delta-G solvation = -3468.017009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.25945 -40.36417 -38.50799 -37.69524 -35.94838 -35.30481 -33.54390 -31.69007 -31.13408 -27.87056 -26.88083 -25.33645 -24.14824 -23.53852 -23.34061 -22.70416 -21.00358 -19.67987 -18.84166 -18.20814 -17.75436 -17.65621 -16.82137 -16.57507 -16.01447 -15.74227 -15.32711 -15.22969 -15.05419 -14.80896 -14.54798 -14.40137 -14.38993 -13.90302 -13.83956 -13.61193 -12.93871 -12.86137 -12.76460 -12.74989 -12.32906 -12.27667 -12.18043 -12.06554 -11.93381 -11.79292 -11.66965 -11.28664 -11.07101 -10.95742 -10.52540 -10.28153 -9.67750 -9.61295 -8.10976 -6.26553 0.90986 1.02281 1.43321 1.44486 1.52069 1.53913 2.23537 2.43613 2.95245 3.06216 3.18962 3.76374 3.89924 3.93618 4.05224 4.07929 4.15144 4.23908 4.26281 4.38663 4.50738 4.51819 4.66566 4.73649 4.77507 4.82952 4.84588 4.86250 5.04811 5.07132 5.18108 5.22558 5.25894 5.30464 5.31597 5.42775 5.59321 5.64118 5.86318 5.93869 5.95437 6.29620 6.33204 6.67147 6.80926 6.89507 7.43595 8.92410 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.004745 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.356074 B = 5899.624852 C = 6331.144678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.558 5.558 4 C 0.524 3.476 5 O -0.533 6.533 6 C 0.498 3.502 7 O -0.558 6.558 8 N -0.587 5.587 9 C 0.103 3.897 10 C -0.121 4.121 11 C -0.106 4.106 12 C 0.044 3.956 13 H 0.000 1.000 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.913 5.913 18 Si 0.953 3.047 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.267 1.267 22 C 0.123 3.877 23 C 0.066 3.934 24 C -0.196 4.196 25 C -0.191 4.191 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.260 0.740 38 H 0.038 0.962 39 H 0.082 0.918 40 H 0.177 0.823 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 3.573 -15.936 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.289 5.289 4 C 0.307 3.693 5 O -0.411 6.411 6 C 0.280 3.720 7 O -0.436 6.436 8 N -0.319 5.319 9 C -0.018 4.018 10 C -0.159 4.159 11 C -0.144 4.144 12 C 0.025 3.975 13 H 0.018 0.982 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.185 4.185 17 N -0.551 5.551 18 Si 0.779 3.221 19 H -0.196 1.196 20 H -0.216 1.216 21 H -0.192 1.192 22 C 0.001 3.999 23 C -0.036 4.036 24 C -0.233 4.233 25 C -0.230 4.230 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.194 0.806 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.624 4.169 -15.720 17.962 hybrid contribution -1.023 -0.295 1.483 1.825 sum 6.601 3.874 -14.237 16.164 Atomic orbital electron populations 1.22205 0.95507 1.03212 1.02022 1.21884 0.95036 0.80006 1.04951 1.47486 1.62355 1.14677 1.04423 1.20207 0.77851 0.86188 0.85020 1.90572 1.44848 1.19182 1.86530 1.20706 0.85800 0.79237 0.86218 1.90769 1.20516 1.60086 1.72222 1.48594 1.08479 1.48191 1.26674 1.21913 0.79703 0.99257 1.00969 1.21825 1.02452 0.93535 0.98053 1.21539 0.96223 1.00040 0.96588 1.18878 0.92666 0.90453 0.95548 0.98196 1.21468 0.92441 1.35429 1.08034 0.91876 1.25810 0.96319 0.96235 1.00147 1.70031 0.99351 1.45926 1.39835 0.85681 0.76671 0.79510 0.80235 1.19598 1.21643 1.19172 1.21978 1.02721 0.92577 0.82603 1.22279 1.05404 0.89628 0.86318 1.23963 0.94159 0.99547 1.05630 1.23278 0.96589 1.00074 1.03020 0.95278 0.90384 0.90223 0.84697 0.92167 0.89768 0.90109 0.87581 0.91884 0.92648 0.92040 0.93090 0.94356 0.89972 0.80603 0.87044 0.86057 0.85343 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 10.19 71.99 0.73 -3.92 16 2 C 0.10 2.52 5.92 86.38 0.51 3.03 16 3 N -0.56 -14.99 2.85 -799.39 -2.27 -17.27 16 4 C 0.52 18.63 5.22 87.27 0.46 19.09 16 5 O -0.53 -20.13 12.94 -3.27 -0.04 -20.17 16 6 C 0.50 21.46 5.56 87.27 0.49 21.95 16 7 O -0.56 -28.96 15.17 -3.25 -0.05 -29.01 16 8 N -0.59 -24.01 2.98 -821.29 -2.45 -26.46 16 9 C 0.10 3.18 6.33 86.22 0.55 3.73 16 10 C -0.12 -3.36 6.06 30.53 0.19 -3.17 16 11 C -0.11 -3.83 5.11 30.62 0.16 -3.67 16 12 C 0.04 2.08 2.25 -11.46 -0.03 2.05 16 13 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 14 C -0.54 -28.22 8.56 25.60 0.22 -28.00 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.01 0.80 5.30 84.66 0.45 1.25 16 17 N -0.91 -53.42 11.39 21.45 0.24 -53.18 16 18 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.12 6.00 5.39 86.36 0.47 6.46 16 23 C 0.07 1.29 6.62 44.99 0.30 1.59 16 24 C -0.20 -4.09 9.64 30.62 0.30 -3.79 16 25 C -0.19 -4.02 9.90 30.62 0.30 -3.72 16 26 H 0.03 1.05 6.56 -2.39 -0.02 1.04 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.14 2.02 7.98 -2.39 -0.02 2.00 16 30 H 0.06 1.83 7.09 -2.39 -0.02 1.81 16 31 H 0.08 2.34 6.29 -2.39 -0.02 2.32 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 38 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.08 4.79 5.16 -2.38 -0.01 4.77 16 40 H 0.18 1.92 8.06 -2.39 -0.02 1.90 16 41 H 0.11 3.17 4.96 -25.52 -0.13 3.04 16 42 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 1.73 7.83 -2.39 -0.02 1.71 16 Total: -1.00 -70.89 347.78 3.41 -67.48 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.87 Total: 20.62 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.08 Total: 12.87 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -4.48 Total: -96.90 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.09 Total: -49.18 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.89 3.41 -67.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350179098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.511 kcal (2) G-P(sol) polarization free energy of solvation -70.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds