Wall clock time and date at job start Tue Mar 31 2020 06:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.67032 * 2 1 4 4 C 1.54884 * 110.75520 * 236.76527 * 2 1 3 5 5 C 1.54269 * 104.19613 * 203.56067 * 4 2 1 6 6 C 1.53875 * 106.59651 * 23.60833 * 5 4 2 7 7 H 1.08994 * 110.03285 * 119.33614 * 6 5 4 8 8 N 1.46502 * 110.03234 * 240.71948 * 6 5 4 9 9 C 1.34779 * 119.99779 * 273.54520 * 8 6 5 10 10 O 1.21343 * 119.99883 * 0.02562 * 9 8 6 11 11 C 1.49449 * 119.99741 * 179.97438 * 9 8 6 12 12 O 1.21350 * 120.00170 * 5.66968 * 11 9 8 13 13 N 1.34784 * 120.00002 * 185.66817 * 11 9 8 14 14 C 1.46500 * 120.00104 * 185.73825 * 13 11 9 15 15 C 1.53000 * 109.46935 * 182.84428 * 14 13 11 16 16 C 1.50703 * 115.56187 * 320.10118 * 15 14 13 17 17 H 1.07996 * 119.99965 * 95.07805 * 16 15 14 18 18 C 1.37886 * 119.99720 * 275.07559 * 16 15 14 19 19 N 1.31513 * 119.99805 * 7.75999 * 18 16 15 20 20 Si 1.86801 * 119.99487 * 187.76164 * 18 16 15 21 21 H 1.48499 * 109.47145 * 60.00425 * 20 18 16 22 22 H 1.48503 * 109.46428 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47220 * 299.99935 * 20 18 16 24 24 C 1.52992 * 117.49721 * 105.79038 * 15 14 13 25 25 C 1.52999 * 60.00413 * 107.48871 * 24 15 14 26 26 C 1.54267 * 106.60026 * 359.97438 * 6 5 4 27 27 H 1.08996 * 109.47361 * 181.78569 * 1 2 3 28 28 H 1.09004 * 109.47373 * 301.78134 * 1 2 3 29 29 H 1.09000 * 109.47352 * 61.78168 * 1 2 3 30 30 H 1.08993 * 110.49106 * 84.87861 * 4 2 1 31 31 H 1.09007 * 110.59998 * 322.29203 * 4 2 1 32 32 H 1.09005 * 110.02971 * 264.32698 * 5 4 2 33 33 H 1.08999 * 110.07408 * 142.91317 * 5 4 2 34 34 H 0.96997 * 120.00313 * 93.54670 * 8 6 5 35 35 H 0.96996 * 119.99845 * 5.73585 * 13 11 9 36 36 H 1.08999 * 109.47015 * 62.84404 * 14 13 11 37 37 H 1.08996 * 109.46928 * 302.84186 * 14 13 11 38 38 H 0.97001 * 119.99613 * 174.97959 * 19 18 16 39 39 H 1.09008 * 117.49785 * 214.97251 * 24 15 14 40 40 H 1.09002 * 117.50425 * 359.97438 * 24 15 14 41 41 H 1.09001 * 117.49914 * 252.51612 * 25 24 15 42 42 H 1.08994 * 117.52006 * 107.47340 * 25 24 15 43 43 H 1.09007 * 110.48457 * 95.07202 * 26 6 5 44 44 H 1.09000 * 110.48872 * 217.71084 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2114 5 6 3.4949 -1.2215 -0.7733 6 6 3.4974 -1.2224 0.7654 7 1 3.7202 -2.2222 1.1378 8 7 4.4897 -0.2680 1.2662 9 6 5.7719 -0.6511 1.4269 10 8 6.1044 -1.7863 1.1563 11 6 6.7843 0.3227 1.9372 12 8 6.4346 1.4253 2.3040 13 7 8.0857 -0.0239 1.9902 14 6 9.0601 0.8805 2.6057 15 6 10.4634 0.2855 2.4724 16 6 10.5607 -1.2038 2.6817 17 1 10.5325 -1.8713 1.8332 18 6 10.6859 -1.7140 3.9566 19 7 10.5674 -0.9191 4.9975 20 14 11.0238 -3.5344 4.2049 21 1 12.3056 -3.8941 3.5470 22 1 11.1145 -3.8271 5.6579 23 1 9.9206 -4.3286 3.6072 24 6 11.4038 0.9173 1.4443 25 6 11.6416 1.1430 2.9388 26 6 2.0831 -0.7946 1.2087 27 1 -0.3634 -1.0271 0.0320 28 1 -0.3634 0.5413 0.8736 29 1 -0.3634 0.4859 -0.9055 30 1 2.1289 -0.1565 -2.0942 31 1 1.4600 -1.6691 -1.4086 32 1 4.2320 -0.5109 -1.1475 33 1 3.7165 -2.2209 -1.1477 34 1 4.2240 0.6395 1.4821 35 1 8.3772 -0.8720 1.6207 36 1 8.8193 1.0104 3.6608 37 1 9.0262 1.8473 2.1036 38 1 10.5827 -1.2887 5.8942 39 1 12.0931 0.2559 0.9194 40 1 11.0228 1.7567 0.8626 41 1 11.4169 2.1310 3.3406 42 1 12.4869 0.6300 3.3974 43 1 1.4637 -1.6699 1.4047 44 1 2.1363 -0.1583 2.0921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353715155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:28 Heat of formation + Delta-G solvation = -67.776511 kcal Electronic energy + Delta-G solvation = -23751.427215 eV Core-core repulsion = 20282.594854 eV Total energy + Delta-G solvation = -3468.832360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35720 -38.85645 -37.64451 -36.68999 -34.24523 -33.11651 -32.02772 -30.75442 -28.69917 -26.95162 -25.53695 -25.09991 -23.23127 -21.18667 -20.42273 -20.19231 -19.88945 -19.51308 -17.87449 -16.72481 -16.12634 -15.82156 -15.44612 -15.00331 -14.86273 -14.65531 -14.45077 -14.01571 -13.76360 -13.52161 -13.08055 -13.00720 -12.68557 -12.42477 -12.11946 -11.94200 -11.64171 -11.57813 -11.27997 -11.18444 -11.01395 -10.94586 -10.92734 -10.81464 -10.74339 -10.54331 -10.25874 -9.68197 -9.16371 -9.10702 -8.95854 -8.56544 -8.41700 -8.04212 -6.11986 -4.21290 1.90218 2.80935 3.29124 3.33540 3.36957 3.70273 4.15408 4.28663 4.32086 4.35677 4.57058 5.02768 5.07838 5.12075 5.18211 5.21190 5.25649 5.28653 5.31433 5.46387 5.49248 5.60316 5.67152 5.80792 5.87740 5.96702 5.98432 6.02573 6.16117 6.25729 6.43870 6.46640 6.47732 6.68384 6.80897 7.04289 7.07584 7.26236 7.36801 7.45539 7.78521 7.98979 8.29069 8.30278 8.67451 8.81163 9.47130 10.95537 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.003437 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.680104 B = 8145.136439 C = 8759.873845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.136 4.136 6 C 0.138 3.862 7 H 0.093 0.907 8 N -0.702 5.702 9 C 0.508 3.492 10 O -0.517 6.517 11 C 0.493 3.507 12 O -0.548 6.548 13 N -0.657 5.657 14 C 0.160 3.840 15 C 0.026 3.974 16 C -0.509 4.509 17 H 0.063 0.937 18 C 0.079 3.921 19 N -0.871 5.871 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.209 4.209 25 C -0.150 4.150 26 C -0.127 4.127 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.410 0.590 35 H 0.417 0.583 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 1.644 -8.968 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.175 4.175 6 C 0.034 3.966 7 H 0.111 0.889 8 N -0.357 5.357 9 C 0.289 3.711 10 O -0.391 6.391 11 C 0.272 3.728 12 O -0.428 6.428 13 N -0.307 5.307 14 C 0.037 3.963 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.081 0.919 18 C -0.126 4.126 19 N -0.506 5.506 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.247 4.247 25 C -0.188 4.188 26 C -0.165 4.165 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.246 0.754 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.526 1.580 -8.660 18.725 hybrid contribution 0.268 -0.945 0.282 1.022 sum -16.258 0.635 -8.379 18.301 Atomic orbital electron populations 1.21751 0.94801 1.01835 1.01683 1.22148 0.95536 0.99394 0.94802 0.90416 1.22433 0.95818 0.99735 0.97666 1.22612 0.97433 1.02474 0.94932 1.21664 0.87314 0.93857 0.93781 0.88923 1.45920 1.07712 1.16037 1.66004 1.20523 0.83787 0.88317 0.78474 1.90756 1.79850 1.19978 1.48514 1.19955 0.84365 0.87266 0.81213 1.90688 1.80461 1.21702 1.49943 1.45915 1.05323 1.23764 1.55746 1.21047 0.88397 0.89636 0.97186 1.19004 0.86368 0.94300 0.97787 1.20300 1.52755 0.88974 0.92594 0.91920 1.24981 0.93953 0.97692 0.96015 1.69965 1.47519 1.34839 0.98309 0.86689 0.79189 0.85340 0.77092 1.20091 1.21271 1.19887 1.23096 1.06494 1.02625 0.92451 1.22505 1.02439 0.99346 0.94502 1.22751 0.94556 1.00827 0.98399 0.92584 0.92620 0.92651 0.91603 0.91404 0.91045 0.90918 0.75401 0.74387 0.90980 0.93645 0.92724 0.90255 0.91517 0.91594 0.89800 0.89992 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.28 37.16 0.35 -0.55 16 2 C -0.10 -0.75 3.48 -88.64 -0.31 -1.06 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.93 6.27 -25.07 -0.16 -1.09 16 5 C -0.14 -1.38 6.59 -25.61 -0.17 -1.55 16 6 C 0.14 1.53 3.23 -66.81 -0.22 1.32 16 7 H 0.09 1.16 7.61 -51.93 -0.39 0.76 16 8 N -0.70 -9.38 4.94 -53.15 -0.26 -9.65 16 9 C 0.51 8.85 7.87 -11.58 -0.09 8.76 16 10 O -0.52 -10.16 16.18 5.50 0.09 -10.07 16 11 C 0.49 9.74 7.88 -11.58 -0.09 9.65 16 12 O -0.55 -11.45 16.49 5.50 0.09 -11.36 16 13 N -0.66 -13.97 5.35 -60.73 -0.32 -14.29 16 14 C 0.16 3.61 5.76 -4.04 -0.02 3.59 16 15 C 0.03 0.61 1.72 -155.66 -0.27 0.35 16 16 C -0.51 -13.11 7.40 -34.44 -0.25 -13.36 16 17 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 18 C 0.08 2.08 5.38 -17.82 -0.10 1.99 16 19 N -0.87 -23.92 12.98 55.43 0.72 -23.20 16 20 Si 0.89 20.76 29.55 -169.99 -5.02 15.73 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.21 -4.38 9.88 -26.74 -0.26 -4.64 16 25 C -0.15 -3.38 9.51 -26.73 -0.25 -3.63 16 26 C -0.13 -1.06 5.88 -25.09 -0.15 -1.21 16 27 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 32 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 4.99 8.04 -40.82 -0.33 4.66 16 35 H 0.42 9.07 6.90 -40.82 -0.28 8.79 16 36 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16 38 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 39 H 0.08 1.64 8.14 -51.92 -0.42 1.21 16 40 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 43 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 44 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -28.82 365.04 -8.47 -37.30 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.27 Total: 11.48 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.99 Total: -1.44 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.13 Total: -47.14 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.18 Total: -21.43 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.82 -8.47 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353715155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.481 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds