Wall clock time and date at job start Tue Mar 31 2020 06:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.67032 * 2 1 4 4 C 1.54884 * 110.75520 * 236.76527 * 2 1 3 5 5 C 1.54269 * 104.19613 * 203.56067 * 4 2 1 6 6 C 1.53875 * 106.59651 * 23.60833 * 5 4 2 7 7 H 1.08994 * 110.03285 * 119.33614 * 6 5 4 8 8 N 1.46502 * 110.03234 * 240.71948 * 6 5 4 9 9 C 1.34779 * 119.99779 * 273.54520 * 8 6 5 10 10 O 1.21343 * 119.99883 * 0.02562 * 9 8 6 11 11 C 1.49449 * 119.99741 * 179.97438 * 9 8 6 12 12 O 1.21350 * 120.00170 * 5.66968 * 11 9 8 13 13 N 1.34784 * 120.00002 * 185.66817 * 11 9 8 14 14 C 1.46500 * 120.00104 * 185.73825 * 13 11 9 15 15 C 1.53000 * 109.46935 * 182.84428 * 14 13 11 16 16 C 1.50703 * 115.56187 * 320.10118 * 15 14 13 17 17 H 1.07996 * 119.99965 * 95.07805 * 16 15 14 18 18 C 1.37886 * 119.99720 * 275.07559 * 16 15 14 19 19 N 1.31513 * 119.99805 * 7.75999 * 18 16 15 20 20 Si 1.86801 * 119.99487 * 187.76164 * 18 16 15 21 21 H 1.48499 * 109.47145 * 60.00425 * 20 18 16 22 22 H 1.48503 * 109.46428 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47220 * 299.99935 * 20 18 16 24 24 C 1.52992 * 117.49721 * 105.79038 * 15 14 13 25 25 C 1.52999 * 60.00413 * 107.48871 * 24 15 14 26 26 C 1.54267 * 106.60026 * 359.97438 * 6 5 4 27 27 H 1.08996 * 109.47361 * 181.78569 * 1 2 3 28 28 H 1.09004 * 109.47373 * 301.78134 * 1 2 3 29 29 H 1.09000 * 109.47352 * 61.78168 * 1 2 3 30 30 H 1.08993 * 110.49106 * 84.87861 * 4 2 1 31 31 H 1.09007 * 110.59998 * 322.29203 * 4 2 1 32 32 H 1.09005 * 110.02971 * 264.32698 * 5 4 2 33 33 H 1.08999 * 110.07408 * 142.91317 * 5 4 2 34 34 H 0.96997 * 120.00313 * 93.54670 * 8 6 5 35 35 H 0.96996 * 119.99845 * 5.73585 * 13 11 9 36 36 H 1.08999 * 109.47015 * 62.84404 * 14 13 11 37 37 H 1.08996 * 109.46928 * 302.84186 * 14 13 11 38 38 H 0.97001 * 119.99613 * 174.97959 * 19 18 16 39 39 H 1.09008 * 117.49785 * 214.97251 * 24 15 14 40 40 H 1.09002 * 117.50425 * 359.97438 * 24 15 14 41 41 H 1.09001 * 117.49914 * 252.51612 * 25 24 15 42 42 H 1.08994 * 117.52006 * 107.47340 * 25 24 15 43 43 H 1.09007 * 110.48457 * 95.07202 * 26 6 5 44 44 H 1.09000 * 110.48872 * 217.71084 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2114 5 6 3.4949 -1.2215 -0.7733 6 6 3.4974 -1.2224 0.7654 7 1 3.7202 -2.2222 1.1378 8 7 4.4897 -0.2680 1.2662 9 6 5.7719 -0.6511 1.4269 10 8 6.1044 -1.7863 1.1563 11 6 6.7843 0.3227 1.9372 12 8 6.4346 1.4253 2.3040 13 7 8.0857 -0.0239 1.9902 14 6 9.0601 0.8805 2.6057 15 6 10.4634 0.2855 2.4724 16 6 10.5607 -1.2038 2.6817 17 1 10.5325 -1.8713 1.8332 18 6 10.6859 -1.7140 3.9566 19 7 10.5674 -0.9191 4.9975 20 14 11.0238 -3.5344 4.2049 21 1 12.3056 -3.8941 3.5470 22 1 11.1145 -3.8271 5.6579 23 1 9.9206 -4.3286 3.6072 24 6 11.4038 0.9173 1.4443 25 6 11.6416 1.1430 2.9388 26 6 2.0831 -0.7946 1.2087 27 1 -0.3634 -1.0271 0.0320 28 1 -0.3634 0.5413 0.8736 29 1 -0.3634 0.4859 -0.9055 30 1 2.1289 -0.1565 -2.0942 31 1 1.4600 -1.6691 -1.4086 32 1 4.2320 -0.5109 -1.1475 33 1 3.7165 -2.2209 -1.1477 34 1 4.2240 0.6395 1.4821 35 1 8.3772 -0.8720 1.6207 36 1 8.8193 1.0104 3.6608 37 1 9.0262 1.8473 2.1036 38 1 10.5827 -1.2887 5.8942 39 1 12.0931 0.2559 0.9194 40 1 11.0228 1.7567 0.8626 41 1 11.4169 2.1310 3.3406 42 1 12.4869 0.6300 3.3974 43 1 1.4637 -1.6699 1.4047 44 1 2.1363 -0.1583 2.0921 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353715155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:28 Heat of formation + Delta-G solvation = -85.505057 kcal Electronic energy + Delta-G solvation = -23752.195982 eV Core-core repulsion = 20282.594854 eV Total energy + Delta-G solvation = -3469.601128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73094 -40.09921 -38.89565 -38.44562 -35.52686 -34.61463 -34.02403 -31.51793 -29.56932 -28.56423 -27.43864 -25.96173 -24.57604 -22.93442 -21.52302 -21.28326 -21.18419 -20.88119 -19.42187 -18.12062 -17.85905 -16.98905 -16.89857 -16.65044 -16.28900 -15.89828 -15.59735 -15.54466 -14.98477 -14.75900 -14.46709 -14.39288 -13.77557 -13.64084 -13.53300 -13.06054 -13.01467 -12.95764 -12.82367 -12.68572 -12.39004 -12.30489 -12.01789 -11.95525 -11.66920 -11.50191 -11.42679 -11.40751 -10.91191 -10.67409 -10.48231 -10.29081 -10.18114 -9.82655 -8.13436 -6.26272 0.40053 1.42102 1.43585 1.44374 1.49985 2.18994 2.40954 2.78020 3.15326 3.42919 3.54520 3.58733 3.63254 3.90983 4.21537 4.35562 4.39776 4.48141 4.49747 4.58544 4.64719 4.65660 4.68332 4.77288 4.80068 4.96855 4.99895 5.02536 5.06015 5.13285 5.15437 5.24814 5.30491 5.33618 5.38935 5.44277 5.53866 5.56572 5.64128 5.74591 6.05241 6.34297 6.51841 6.80879 6.83285 7.04293 7.44013 8.93428 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.003437 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.680104 B = 8145.136439 C = 8759.873845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.131 3.869 7 H 0.078 0.922 8 N -0.681 5.681 9 C 0.512 3.488 10 O -0.543 6.543 11 C 0.492 3.508 12 O -0.559 6.559 13 N -0.664 5.664 14 C 0.173 3.827 15 C -0.001 4.001 16 C -0.513 4.513 17 H 0.059 0.941 18 C 0.036 3.964 19 N -0.899 5.899 20 Si 0.943 3.057 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.182 4.182 25 C -0.155 4.155 26 C -0.121 4.121 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.417 0.583 35 H 0.415 0.585 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.196 1.701 -10.170 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.174 4.174 6 C 0.028 3.972 7 H 0.096 0.904 8 N -0.335 5.335 9 C 0.292 3.708 10 O -0.420 6.420 11 C 0.273 3.727 12 O -0.440 6.440 13 N -0.314 5.314 14 C 0.050 3.950 15 C -0.001 4.001 16 C -0.551 4.551 17 H 0.077 0.923 18 C -0.167 4.167 19 N -0.536 5.536 20 Si 0.769 3.231 21 H -0.195 1.195 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.219 4.219 25 C -0.193 4.193 26 C -0.159 4.159 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.255 0.745 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.116 1.655 -9.880 20.701 hybrid contribution 0.706 -0.926 0.618 1.318 sum -17.411 0.729 -9.261 19.734 Atomic orbital electron populations 1.21727 0.93526 1.02370 1.02162 1.22138 0.96518 0.98968 0.93939 0.90647 1.22414 0.94191 1.00361 0.98013 1.22582 0.98818 1.02038 0.93935 1.21934 0.88072 0.92640 0.94598 0.90354 1.45934 1.06599 1.16795 1.64139 1.20091 0.84545 0.87371 0.78769 1.90747 1.80379 1.20676 1.50237 1.20373 0.84328 0.87502 0.80523 1.90671 1.80624 1.22369 1.50325 1.45882 1.05889 1.23531 1.56099 1.20782 0.88214 0.90425 0.95619 1.19081 0.87191 0.93567 1.00290 1.20552 1.51753 0.90381 0.92384 0.92266 1.25599 0.94130 1.00910 0.96017 1.70067 1.48995 1.36115 0.98403 0.85852 0.78992 0.81489 0.76780 1.19522 1.21337 1.19995 1.23103 1.04604 1.02626 0.91564 1.22442 1.01315 0.99461 0.96052 1.22756 0.92612 1.01620 0.98873 0.92020 0.92318 0.92071 0.90939 0.90239 0.92400 0.91234 0.74510 0.74715 0.94063 0.92357 0.93056 0.89919 0.88960 0.90474 0.91770 0.88539 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.28 71.98 0.67 -0.69 16 2 C -0.10 -1.21 3.48 -9.51 -0.03 -1.25 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.50 6.27 31.67 0.20 -1.30 16 5 C -0.14 -2.58 6.59 31.32 0.21 -2.38 16 6 C 0.13 2.76 3.23 45.72 0.15 2.91 16 7 H 0.08 1.92 7.61 -2.39 -0.02 1.90 16 8 N -0.68 -17.66 4.94 -440.44 -2.17 -19.83 16 9 C 0.51 17.76 7.87 87.27 0.69 18.45 16 10 O -0.54 -21.48 16.18 -3.22 -0.05 -21.54 16 11 C 0.49 19.46 7.88 87.27 0.69 20.15 16 12 O -0.56 -23.18 16.49 -3.25 -0.05 -23.23 16 13 N -0.66 -28.39 5.35 -464.41 -2.48 -30.87 16 14 C 0.17 7.82 5.76 86.38 0.50 8.31 16 15 C 0.00 -0.03 1.72 -52.93 -0.09 -0.12 16 16 C -0.51 -26.51 7.40 25.60 0.19 -26.32 16 17 H 0.06 3.03 7.83 -2.91 -0.02 3.01 16 18 C 0.04 1.89 5.38 84.66 0.46 2.34 16 19 N -0.90 -50.16 12.98 21.45 0.28 -49.88 16 20 Si 0.94 42.88 29.55 68.60 2.03 44.91 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 24 C -0.18 -7.30 9.88 30.59 0.30 -7.00 16 25 C -0.15 -6.90 9.51 30.60 0.29 -6.61 16 26 C -0.12 -1.76 5.88 31.66 0.19 -1.57 16 27 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.91 8.05 -2.38 -0.02 0.89 16 32 H 0.06 1.27 7.92 -2.38 -0.02 1.25 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.42 9.66 8.04 -92.71 -0.75 8.92 16 35 H 0.41 18.21 6.90 -92.71 -0.64 17.57 16 36 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 38 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 39 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 40 H 0.09 3.24 8.08 -2.39 -0.02 3.22 16 41 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.10 1.17 8.04 -2.38 -0.02 1.15 16 44 H 0.08 1.14 7.97 -2.39 -0.02 1.12 16 Total: -1.00 -61.25 365.04 1.55 -59.69 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.38 Total: 35.84 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.39 Total: 4.92 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -4.38 Total: -100.59 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.11 Total: -44.77 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -61.25 1.55 -59.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353715155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.812 kcal (2) G-P(sol) polarization free energy of solvation -61.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds