Wall clock time and date at job start Tue Mar 31 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 110.43124 * 2 1 4 4 C 1.54885 * 110.48960 * 237.32246 * 2 1 3 5 5 C 1.54892 * 102.74953 * 203.38110 * 4 2 1 6 6 C 1.54264 * 104.19596 * 37.93504 * 5 4 2 7 7 H 1.09005 * 110.07563 * 217.09020 * 6 5 4 8 8 N 1.46498 * 110.03403 * 95.68259 * 6 5 4 9 9 C 1.34769 * 120.00172 * 87.82685 * 8 6 5 10 10 O 1.21348 * 120.00465 * 0.02562 * 9 8 6 11 11 C 1.49459 * 119.99784 * 180.02562 * 9 8 6 12 12 O 1.21347 * 119.99998 * 5.09353 * 11 9 8 13 13 N 1.34775 * 119.99441 * 185.09695 * 11 9 8 14 14 C 1.46505 * 119.99413 * 184.79710 * 13 11 9 15 15 C 1.53005 * 109.47035 * 185.22195 * 14 13 11 16 16 C 1.50705 * 115.54877 * 65.17917 * 15 14 13 17 17 H 1.07998 * 119.99618 * 273.48332 * 16 15 14 18 18 C 1.37879 * 119.99826 * 93.48460 * 16 15 14 19 19 N 1.31516 * 119.99906 * 354.32391 * 18 16 15 20 20 Si 1.86795 * 119.99648 * 174.31781 * 18 16 15 21 21 H 1.48502 * 109.47327 * 60.00509 * 20 18 16 22 22 H 1.48503 * 109.46865 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47673 * 300.00099 * 20 18 16 24 24 C 1.52997 * 117.49946 * 279.51168 * 15 14 13 25 25 C 1.53002 * 117.49815 * 210.84881 * 15 14 13 26 26 C 1.53874 * 106.60104 * 336.39224 * 6 5 4 27 27 H 1.08994 * 109.46918 * 297.45725 * 1 2 3 28 28 H 1.09003 * 109.46877 * 57.46178 * 1 2 3 29 29 H 1.08998 * 109.46883 * 177.45891 * 1 2 3 30 30 H 1.09005 * 110.75077 * 321.68784 * 4 2 1 31 31 H 1.08996 * 110.76356 * 84.87446 * 4 2 1 32 32 H 1.09001 * 110.47956 * 279.25775 * 5 4 2 33 33 H 1.08990 * 110.49153 * 156.61872 * 5 4 2 34 34 H 0.97007 * 119.99562 * 267.83381 * 8 6 5 35 35 H 0.96993 * 120.00921 * 4.79839 * 13 11 9 36 36 H 1.09000 * 109.47261 * 65.22054 * 14 13 11 37 37 H 1.09004 * 109.47283 * 305.22008 * 14 13 11 38 38 H 0.97002 * 119.99301 * 185.00319 * 19 18 16 39 39 H 1.09005 * 117.49795 * 359.97438 * 24 15 14 40 40 H 1.09001 * 117.50331 * 145.02031 * 24 15 14 41 41 H 1.08997 * 117.49685 * 214.97456 * 25 15 14 42 42 H 1.08996 * 117.49929 * 359.97438 * 25 15 14 43 43 H 1.09004 * 110.03252 * 119.28410 * 26 6 5 44 44 H 1.08993 * 110.03525 * 240.71641 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0722 -0.7833 -1.2212 5 6 3.4908 -1.1988 -0.7585 6 6 3.3166 -1.5395 0.7359 7 1 4.1927 -1.2159 1.2981 8 7 3.1187 -2.9815 0.9022 9 6 4.1835 -3.7968 1.0358 10 8 5.3061 -3.3366 1.0188 11 6 3.9815 -5.2680 1.2048 12 8 2.8661 -5.7400 1.1293 13 7 5.0383 -6.0704 1.4411 14 6 4.8559 -7.5228 1.5022 15 6 6.1736 -8.1856 1.9087 16 6 6.6614 -7.8641 3.2979 17 1 7.2626 -6.9833 3.4687 18 6 6.3402 -8.6945 4.3507 19 7 5.5176 -9.7036 4.1650 20 14 7.0736 -8.3861 6.0408 21 1 6.6755 -7.0361 6.5143 22 1 6.5735 -9.4110 6.9919 23 1 8.5543 -8.4656 5.9600 24 6 7.2282 -8.3882 0.8189 25 6 6.4545 -9.5893 1.3685 26 6 2.0700 -0.7773 1.2182 27 1 -0.3633 0.4738 0.9119 28 1 -0.3633 0.5528 -0.8664 29 1 -0.3633 -1.0266 -0.0456 30 1 1.4582 -1.6617 -1.4202 31 1 2.1221 -0.1415 -2.1008 32 1 4.1898 -0.3716 -0.8823 33 1 3.8317 -2.0736 -1.3120 34 1 2.2212 -3.3494 0.9160 35 1 5.9195 -5.6865 1.5706 36 1 4.5502 -7.8921 0.5233 37 1 4.0871 -7.7619 2.2370 38 1 5.2346 -10.2438 4.9194 39 1 6.9831 -8.0496 -0.1878 40 1 8.2749 -8.2893 1.1068 41 1 6.9925 -10.2800 2.0177 42 1 5.7004 -10.0407 0.7239 43 1 1.3176 -1.4803 1.5759 44 1 2.3412 -0.0832 2.0137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353715159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:31 Heat of formation + Delta-G solvation = -67.216242 kcal Electronic energy + Delta-G solvation = -23632.289227 eV Core-core repulsion = 20163.481161 eV Total energy + Delta-G solvation = -3468.808065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45098 -38.93564 -37.72559 -36.71961 -34.32361 -33.21877 -31.93669 -30.75205 -28.78829 -27.05010 -25.54553 -25.05659 -23.32900 -21.19837 -20.60063 -20.35727 -19.71722 -19.42689 -18.00478 -16.81817 -16.17462 -16.00641 -15.49183 -15.33827 -14.78795 -14.64631 -14.18800 -14.06644 -13.69078 -13.63687 -13.29286 -13.04937 -12.73418 -12.62657 -11.98174 -11.84005 -11.66103 -11.57938 -11.35108 -11.23314 -11.08001 -10.97238 -10.92494 -10.84046 -10.79506 -10.55305 -10.24947 -9.65031 -9.23268 -9.17389 -9.05694 -8.47074 -8.43496 -8.16508 -6.08611 -4.17594 1.80208 2.71312 3.28210 3.33269 3.35968 3.60891 4.04711 4.25338 4.28487 4.35860 4.54466 4.91955 5.01866 5.10364 5.16719 5.16787 5.21856 5.25895 5.31811 5.36813 5.52244 5.58462 5.67854 5.78771 5.84604 5.89185 5.97052 5.97346 6.12190 6.30184 6.38636 6.40982 6.46550 6.66768 6.75020 7.00208 7.09533 7.26407 7.36971 7.51549 7.81002 7.87576 8.15915 8.32087 8.53497 8.83845 9.49368 10.98623 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.003188 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.659977 B = 8780.331225 C = 9201.959785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.121 4.121 5 C -0.134 4.134 6 C 0.138 3.862 7 H 0.094 0.906 8 N -0.700 5.700 9 C 0.509 3.491 10 O -0.521 6.521 11 C 0.495 3.505 12 O -0.540 6.540 13 N -0.667 5.667 14 C 0.159 3.841 15 C 0.020 3.980 16 C -0.501 4.501 17 H 0.061 0.939 18 C 0.074 3.926 19 N -0.876 5.876 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.212 4.212 25 C -0.136 4.136 26 C -0.128 4.128 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.412 0.588 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 16.757 -8.501 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.159 4.159 5 C -0.173 4.173 6 C 0.033 3.967 7 H 0.112 0.888 8 N -0.354 5.354 9 C 0.290 3.710 10 O -0.396 6.396 11 C 0.274 3.726 12 O -0.418 6.418 13 N -0.316 5.316 14 C 0.036 3.964 15 C 0.020 3.980 16 C -0.538 4.538 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.512 5.512 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.250 4.250 25 C -0.174 4.174 26 C -0.166 4.166 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.624 16.510 -8.473 20.063 hybrid contribution 0.310 0.052 1.077 1.122 sum -7.314 16.562 -7.396 19.557 Atomic orbital electron populations 1.21818 0.94785 1.02057 1.01632 1.21984 0.95676 0.99303 0.94589 0.90523 1.22609 0.96073 0.99854 0.97359 1.22782 0.97281 1.01896 0.95331 1.21681 0.99154 0.79219 0.96604 0.88827 1.45954 1.09814 1.07024 1.72600 1.20512 0.85122 0.88194 0.77181 1.90739 1.23357 1.77094 1.48426 1.19963 0.85770 0.86992 0.79870 1.90713 1.23517 1.76313 1.51303 1.45860 1.10827 1.08340 1.66587 1.21247 0.99969 0.76147 0.98999 1.19026 0.90203 0.95973 0.92832 1.20331 1.33722 1.09495 0.90294 0.92120 1.24987 0.94751 0.94450 0.98866 1.69980 1.32057 1.18098 1.31060 0.86670 0.79704 0.77978 0.83738 1.20199 1.21254 1.20120 1.23104 0.98087 1.06378 0.97406 1.22433 1.01579 0.91731 1.01681 1.22562 0.96607 0.99217 0.98246 0.92643 0.92654 0.92415 0.91245 0.91462 0.90603 0.90979 0.75305 0.75191 0.93910 0.90432 0.92784 0.91664 0.90182 0.89315 0.91721 0.90536 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.12 37.16 0.34 -0.58 16 2 C -0.10 -0.67 3.46 -88.96 -0.31 -0.98 16 3 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 4 C -0.12 -0.93 6.33 -24.74 -0.16 -1.09 16 5 C -0.13 -1.27 6.54 -25.07 -0.16 -1.43 16 6 C 0.14 1.43 3.25 -66.82 -0.22 1.22 16 7 H 0.09 1.09 7.56 -51.93 -0.39 0.70 16 8 N -0.70 -8.88 5.02 -53.15 -0.27 -9.14 16 9 C 0.51 8.32 7.88 -11.58 -0.09 8.23 16 10 O -0.52 -9.46 16.15 5.50 0.09 -9.37 16 11 C 0.49 9.35 7.88 -11.58 -0.09 9.26 16 12 O -0.54 -11.08 16.46 5.50 0.09 -10.99 16 13 N -0.67 -13.39 5.44 -60.72 -0.33 -13.72 16 14 C 0.16 3.53 5.53 -4.04 -0.02 3.51 16 15 C 0.02 0.48 1.52 -155.66 -0.24 0.24 16 16 C -0.50 -13.09 8.77 -34.44 -0.30 -13.39 16 17 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 18 C 0.07 1.96 5.36 -17.82 -0.10 1.87 16 19 N -0.88 -24.18 12.40 55.43 0.69 -23.49 16 20 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 25 C -0.14 -3.10 8.95 -26.69 -0.24 -3.34 16 26 C -0.13 -1.02 6.14 -25.61 -0.16 -1.18 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.07 0.56 8.04 -51.93 -0.42 0.15 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 34 H 0.41 4.81 7.80 -40.82 -0.32 4.50 16 35 H 0.41 8.14 7.96 -40.82 -0.32 7.81 16 36 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.08 1.94 8.10 -51.93 -0.42 1.52 16 38 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.09 2.18 7.99 -51.93 -0.42 1.77 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 0.61 7.31 -51.93 -0.38 0.23 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -28.98 365.46 -8.53 -37.51 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.28 Total: 10.28 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.01 Total: -2.37 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.09 Total: -46.35 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.18 Total: -20.36 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.98 -8.53 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353715159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.709 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds