Wall clock time and date at job start Tue Mar 31 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 110.43124 * 2 1 4 4 C 1.54885 * 110.48960 * 237.32246 * 2 1 3 5 5 C 1.54892 * 102.74953 * 203.38110 * 4 2 1 6 6 C 1.54264 * 104.19596 * 37.93504 * 5 4 2 7 7 H 1.09005 * 110.07563 * 217.09020 * 6 5 4 8 8 N 1.46498 * 110.03403 * 95.68259 * 6 5 4 9 9 C 1.34769 * 120.00172 * 87.82685 * 8 6 5 10 10 O 1.21348 * 120.00465 * 0.02562 * 9 8 6 11 11 C 1.49459 * 119.99784 * 180.02562 * 9 8 6 12 12 O 1.21347 * 119.99998 * 5.09353 * 11 9 8 13 13 N 1.34775 * 119.99441 * 185.09695 * 11 9 8 14 14 C 1.46505 * 119.99413 * 184.79710 * 13 11 9 15 15 C 1.53005 * 109.47035 * 185.22195 * 14 13 11 16 16 C 1.50705 * 115.54877 * 65.17917 * 15 14 13 17 17 H 1.07998 * 119.99618 * 273.48332 * 16 15 14 18 18 C 1.37879 * 119.99826 * 93.48460 * 16 15 14 19 19 N 1.31516 * 119.99906 * 354.32391 * 18 16 15 20 20 Si 1.86795 * 119.99648 * 174.31781 * 18 16 15 21 21 H 1.48502 * 109.47327 * 60.00509 * 20 18 16 22 22 H 1.48503 * 109.46865 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47673 * 300.00099 * 20 18 16 24 24 C 1.52997 * 117.49946 * 279.51168 * 15 14 13 25 25 C 1.53002 * 117.49815 * 210.84881 * 15 14 13 26 26 C 1.53874 * 106.60104 * 336.39224 * 6 5 4 27 27 H 1.08994 * 109.46918 * 297.45725 * 1 2 3 28 28 H 1.09003 * 109.46877 * 57.46178 * 1 2 3 29 29 H 1.08998 * 109.46883 * 177.45891 * 1 2 3 30 30 H 1.09005 * 110.75077 * 321.68784 * 4 2 1 31 31 H 1.08996 * 110.76356 * 84.87446 * 4 2 1 32 32 H 1.09001 * 110.47956 * 279.25775 * 5 4 2 33 33 H 1.08990 * 110.49153 * 156.61872 * 5 4 2 34 34 H 0.97007 * 119.99562 * 267.83381 * 8 6 5 35 35 H 0.96993 * 120.00921 * 4.79839 * 13 11 9 36 36 H 1.09000 * 109.47261 * 65.22054 * 14 13 11 37 37 H 1.09004 * 109.47283 * 305.22008 * 14 13 11 38 38 H 0.97002 * 119.99301 * 185.00319 * 19 18 16 39 39 H 1.09005 * 117.49795 * 359.97438 * 24 15 14 40 40 H 1.09001 * 117.50331 * 145.02031 * 24 15 14 41 41 H 1.08997 * 117.49685 * 214.97456 * 25 15 14 42 42 H 1.08996 * 117.49929 * 359.97438 * 25 15 14 43 43 H 1.09004 * 110.03252 * 119.28410 * 26 6 5 44 44 H 1.08993 * 110.03525 * 240.71641 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0722 -0.7833 -1.2212 5 6 3.4908 -1.1988 -0.7585 6 6 3.3166 -1.5395 0.7359 7 1 4.1927 -1.2159 1.2981 8 7 3.1187 -2.9815 0.9022 9 6 4.1835 -3.7968 1.0358 10 8 5.3061 -3.3366 1.0188 11 6 3.9815 -5.2680 1.2048 12 8 2.8661 -5.7400 1.1293 13 7 5.0383 -6.0704 1.4411 14 6 4.8559 -7.5228 1.5022 15 6 6.1736 -8.1856 1.9087 16 6 6.6614 -7.8641 3.2979 17 1 7.2626 -6.9833 3.4687 18 6 6.3402 -8.6945 4.3507 19 7 5.5176 -9.7036 4.1650 20 14 7.0736 -8.3861 6.0408 21 1 6.6755 -7.0361 6.5143 22 1 6.5735 -9.4110 6.9919 23 1 8.5543 -8.4656 5.9600 24 6 7.2282 -8.3882 0.8189 25 6 6.4545 -9.5893 1.3685 26 6 2.0700 -0.7773 1.2182 27 1 -0.3633 0.4738 0.9119 28 1 -0.3633 0.5528 -0.8664 29 1 -0.3633 -1.0266 -0.0456 30 1 1.4582 -1.6617 -1.4202 31 1 2.1221 -0.1415 -2.1008 32 1 4.1898 -0.3716 -0.8823 33 1 3.8317 -2.0736 -1.3120 34 1 2.2212 -3.3494 0.9160 35 1 5.9195 -5.6865 1.5706 36 1 4.5502 -7.8921 0.5233 37 1 4.0871 -7.7619 2.2370 38 1 5.2346 -10.2438 4.9194 39 1 6.9831 -8.0496 -0.1878 40 1 8.2749 -8.2893 1.1068 41 1 6.9925 -10.2800 2.0177 42 1 5.7004 -10.0407 0.7239 43 1 1.3176 -1.4803 1.5759 44 1 2.3412 -0.0832 2.0137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353715159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:30 Heat of formation + Delta-G solvation = -85.221477 kcal Electronic energy + Delta-G solvation = -23633.069992 eV Core-core repulsion = 20163.481161 eV Total energy + Delta-G solvation = -3469.588831 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75756 -40.12849 -38.90814 -38.46891 -35.56653 -34.66622 -33.93195 -31.48240 -29.59971 -28.65373 -27.41891 -25.93897 -24.60479 -22.93855 -21.67159 -21.36113 -21.23009 -20.60693 -19.45899 -18.06979 -17.89290 -17.21545 -16.74058 -16.65602 -16.41340 -16.23975 -15.63900 -15.28286 -14.84201 -14.75317 -14.45830 -14.33985 -13.84364 -13.71365 -13.46460 -13.25164 -12.93539 -12.82737 -12.81797 -12.73006 -12.40889 -12.29939 -12.02585 -11.93841 -11.71677 -11.48680 -11.46417 -11.38139 -10.94260 -10.73815 -10.42772 -10.27527 -10.15625 -9.94160 -8.11532 -6.24857 0.37957 1.39069 1.42218 1.43081 1.49872 2.16961 2.41162 2.72210 3.14805 3.41983 3.56072 3.60005 3.62394 3.92283 4.20223 4.32156 4.44915 4.49131 4.51481 4.54840 4.60640 4.62797 4.66841 4.72483 4.86965 4.90037 4.97500 5.02202 5.03473 5.13843 5.16290 5.28726 5.29517 5.33996 5.36963 5.45150 5.56470 5.57588 5.68096 5.75099 6.01704 6.34980 6.45619 6.78898 6.81745 7.00407 7.44250 8.95000 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.003188 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.659977 B = 8780.331225 C = 9201.959785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.131 3.869 7 H 0.082 0.918 8 N -0.681 5.681 9 C 0.514 3.486 10 O -0.541 6.541 11 C 0.494 3.506 12 O -0.557 6.557 13 N -0.669 5.669 14 C 0.174 3.826 15 C -0.003 4.003 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.028 3.972 19 N -0.903 5.903 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.183 4.183 25 C -0.142 4.142 26 C -0.124 4.124 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.416 0.584 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 18.695 -9.102 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.172 4.172 6 C 0.028 3.972 7 H 0.101 0.899 8 N -0.335 5.335 9 C 0.295 3.705 10 O -0.418 6.418 11 C 0.275 3.725 12 O -0.437 6.437 13 N -0.319 5.319 14 C 0.050 3.950 15 C -0.004 4.004 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.774 3.226 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.220 4.220 25 C -0.181 4.181 26 C -0.162 4.162 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.250 0.750 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.946 18.484 -9.084 22.075 hybrid contribution 0.374 -0.509 1.226 1.379 sum -7.572 17.975 -7.858 21.028 Atomic orbital electron populations 1.21809 0.94146 1.01968 1.02282 1.21969 0.96118 0.99499 0.93353 0.89380 1.22595 0.94625 1.00023 0.98243 1.22765 0.98783 1.01470 0.94160 1.21948 1.00163 0.77591 0.97495 0.89935 1.45993 1.09126 1.07825 1.70510 1.19998 0.85659 0.87078 0.77787 1.90735 1.24134 1.76938 1.50041 1.20426 0.85078 0.88205 0.78801 1.90698 1.24104 1.77034 1.51872 1.45778 1.11339 1.07647 1.67115 1.20873 0.98267 0.77473 0.98341 1.19068 0.91638 0.96846 0.92849 1.20623 1.33282 1.09163 0.91814 0.92537 1.25651 0.95176 0.94491 1.02016 1.70084 1.33294 1.18968 1.31713 0.85784 0.79115 0.77658 0.80086 1.20081 1.21187 1.19572 1.23083 0.97394 1.03865 0.97703 1.22355 1.02313 0.91486 1.01897 1.22570 0.95303 0.99203 0.99111 0.92115 0.91926 0.92906 0.91765 0.90196 0.89594 0.92893 0.74611 0.74950 0.92820 0.93915 0.93038 0.89079 0.90009 0.91653 0.90531 0.90410 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.12 71.98 0.66 -0.80 16 2 C -0.09 -1.02 3.46 -9.72 -0.03 -1.05 16 3 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -1.55 6.33 31.88 0.20 -1.35 16 5 C -0.13 -2.33 6.54 31.67 0.21 -2.12 16 6 C 0.13 2.56 3.25 45.72 0.15 2.71 16 7 H 0.08 1.83 7.56 -2.38 -0.02 1.82 16 8 N -0.68 -16.67 5.02 -440.44 -2.21 -18.88 16 9 C 0.51 16.59 7.88 87.27 0.69 17.28 16 10 O -0.54 -19.41 16.15 -3.24 -0.05 -19.46 16 11 C 0.49 18.63 7.88 87.27 0.69 19.31 16 12 O -0.56 -22.87 16.46 -3.24 -0.05 -22.92 16 13 N -0.67 -26.85 5.44 -464.38 -2.53 -29.38 16 14 C 0.17 7.77 5.53 86.38 0.48 8.24 16 15 C 0.00 -0.15 1.52 -52.92 -0.08 -0.23 16 16 C -0.51 -26.84 8.77 25.60 0.22 -26.61 16 17 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 18 C 0.03 1.49 5.36 84.65 0.45 1.94 16 19 N -0.90 -50.68 12.40 21.45 0.27 -50.41 16 20 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C -0.18 -7.42 9.96 30.62 0.30 -7.11 16 25 C -0.14 -6.46 8.95 30.62 0.27 -6.18 16 26 C -0.12 -1.70 6.14 31.32 0.19 -1.51 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 30 H 0.06 0.93 8.04 -2.38 -0.02 0.91 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.14 8.04 -2.39 -0.02 1.12 16 34 H 0.42 9.33 7.80 -92.70 -0.72 8.60 16 35 H 0.41 16.29 7.96 -92.71 -0.74 15.55 16 36 H 0.05 2.25 8.09 -2.39 -0.02 2.23 16 37 H 0.04 2.19 8.10 -2.38 -0.02 2.17 16 38 H 0.26 14.11 8.32 -92.71 -0.77 13.33 16 39 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 40 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.06 3.25 7.99 -2.39 -0.02 3.23 16 42 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.08 1.07 7.31 -2.38 -0.02 1.06 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -61.67 365.46 1.39 -60.28 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.46 Total: 33.29 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.40 Total: 2.52 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -4.47 Total: -98.67 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.11 Total: -42.38 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -61.67 1.39 -60.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353715159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.942 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds